Wall clock time and date at job start Mon Mar 30 2020 02:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.00125 * 2 1 4 4 C 1.54329 * 109.88332 * 238.90284 * 2 1 3 5 5 H 1.09000 * 110.71696 * 336.75921 * 4 2 1 6 6 N 1.46505 * 110.71437 * 99.85035 * 4 2 1 7 7 C 1.34783 * 119.99790 * 202.55913 * 6 4 2 8 8 O 1.21631 * 119.99693 * 0.02562 * 7 6 4 9 9 C 1.47260 * 120.00174 * 180.02562 * 7 6 4 10 10 C 1.46687 * 126.94163 * 0.02562 * 9 7 6 11 11 C 1.34488 * 106.33026 * 180.02562 * 10 9 7 12 12 N 1.36444 * 108.85854 * 0.02562 * 11 10 9 13 13 C 1.46495 * 124.84962 * 180.02562 * 12 11 10 14 14 C 1.34661 * 110.29887 * 359.72439 * 12 11 10 15 15 C 1.55149 * 103.10453 * 218.29905 * 4 2 1 16 16 C 1.54908 * 101.58022 * 35.59625 * 15 4 2 17 17 N 1.47431 * 104.83190 * 322.98377 * 16 15 4 18 18 C 1.36933 * 125.65173 * 204.17015 * 17 16 15 19 19 H 1.08001 * 120.00411 * 169.82942 * 18 17 16 20 20 C 1.38815 * 119.99753 * 349.83148 * 18 17 16 21 21 N 1.31613 * 120.00511 * 350.41877 * 20 18 17 22 22 Si 1.86808 * 119.99742 * 170.42268 * 20 18 17 23 23 H 1.48489 * 109.47254 * 94.10425 * 22 20 18 24 24 H 1.48506 * 109.46625 * 214.10443 * 22 20 18 25 25 H 1.48498 * 109.46938 * 334.09988 * 22 20 18 26 26 H 1.09004 * 109.47097 * 181.09267 * 1 2 3 27 27 H 1.08998 * 109.47541 * 301.09457 * 1 2 3 28 28 H 1.08998 * 109.47323 * 61.09243 * 1 2 3 29 29 H 0.96995 * 120.00319 * 22.56320 * 6 4 2 30 30 H 1.07997 * 126.83143 * 0.04311 * 10 9 7 31 31 H 1.07998 * 125.56563 * 180.02562 * 11 10 9 32 32 H 1.08999 * 109.47123 * 89.97512 * 13 12 11 33 33 H 1.08999 * 109.47069 * 209.96855 * 13 12 11 34 34 H 1.08993 * 109.47121 * 329.97073 * 13 12 11 35 35 H 1.07992 * 125.80406 * 180.30653 * 14 12 11 36 36 H 1.08998 * 111.00471 * 153.66448 * 15 4 2 37 37 H 1.08993 * 111.01023 * 277.48212 * 15 4 2 38 38 H 1.08997 * 110.37099 * 81.82690 * 16 15 4 39 39 H 1.09004 * 110.36555 * 204.15539 * 16 15 4 40 40 H 0.96999 * 120.00735 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 1.3050 -1.4459 -1.6183 6 7 2.4515 0.1960 -2.2891 7 6 2.5007 -0.2038 -3.5753 8 8 2.2152 -1.3495 -3.8673 9 6 2.8999 0.7465 -4.6270 10 6 3.2737 2.1536 -4.4482 11 6 3.5600 2.6275 -5.6737 12 7 3.3911 1.6257 -6.5846 13 6 3.6094 1.7602 -8.0269 14 6 3.0016 0.4941 -5.9674 15 6 3.2896 -1.5140 -0.6969 16 6 2.8200 -1.8832 0.7324 17 7 2.0352 -0.7198 1.1840 18 6 1.8126 -0.3646 2.4876 19 1 1.3656 0.5911 2.7182 20 6 2.1616 -1.2330 3.5128 21 7 2.5287 -2.4659 3.2347 22 14 2.1101 -0.6517 5.2874 23 1 0.7985 -1.0059 5.8865 24 1 3.1986 -1.3084 6.0551 25 1 2.2928 0.8214 5.3312 26 1 -0.3633 -1.0275 0.0196 27 1 -0.3634 0.5307 0.8800 28 1 -0.3634 0.4968 -0.8996 29 1 2.6788 1.1098 -2.0562 30 1 3.3116 2.7001 -3.5174 31 1 3.8726 3.6363 -5.8999 32 1 4.6456 1.5168 -8.2618 33 1 2.9464 1.0786 -8.5598 34 1 3.3986 2.7850 -8.3323 35 1 2.8014 -0.4515 -6.4492 36 1 3.4870 -2.4092 -1.2866 37 1 4.1669 -0.8680 -0.6659 38 1 2.1952 -2.7759 0.7077 39 1 3.6788 -2.0381 1.3857 40 1 2.7730 -3.0726 3.9510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088522157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:32 Heat of formation + Delta-G solvation = 39.948958 kcal Electronic energy + Delta-G solvation = -21330.384990 eV Core-core repulsion = 18146.791717 eV Total energy + Delta-G solvation = -3183.593274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.29616 -39.12223 -37.26117 -33.83384 -32.96735 -31.78955 -30.28377 -29.31179 -28.58849 -26.86904 -24.65233 -23.89460 -22.30393 -20.46782 -20.05897 -19.84401 -19.17880 -17.80684 -16.65547 -15.82261 -15.61232 -15.49112 -14.62077 -14.30890 -14.22714 -13.87947 -13.64424 -13.24191 -13.14760 -12.75494 -12.66911 -12.50743 -12.12526 -12.01606 -11.89216 -11.45962 -11.02927 -10.85948 -10.70396 -10.45950 -10.28318 -10.00083 -9.73301 -9.59406 -9.48495 -8.77504 -8.57486 -8.51347 -8.29358 -6.77072 -5.68830 -3.01882 1.81590 2.33226 2.63549 3.42945 3.48287 3.50456 3.72883 3.82055 4.41444 4.54604 4.74139 4.75785 4.86436 5.00908 5.22166 5.38275 5.44918 5.50139 5.64049 5.71111 5.79650 5.93388 6.00381 6.23222 6.36040 6.43212 6.46895 6.63459 6.65688 6.74665 6.81149 6.89287 7.00686 7.05932 7.26677 7.57684 7.66546 7.84449 8.01142 8.30836 8.70292 9.24137 9.85999 10.53885 11.43860 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040339 B = 0.003464 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.959188 B = 8081.794136 C = 8278.898386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.036 0.964 4 C 0.138 3.862 5 H 0.092 0.908 6 N -0.711 5.711 7 C 0.588 3.412 8 O -0.558 6.558 9 C -0.227 4.227 10 C -0.168 4.168 11 C -0.021 4.021 12 N -0.451 5.451 13 C 0.070 3.930 14 C 0.069 3.931 15 C -0.154 4.154 16 C 0.175 3.825 17 N -0.595 5.595 18 C -0.225 4.225 19 H 0.075 0.925 20 C -0.007 4.007 21 N -0.917 5.917 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.397 0.603 30 H 0.146 0.854 31 H 0.165 0.835 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.174 0.826 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.621 10.395 -20.814 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.046 3.954 3 H 0.054 0.946 4 C 0.033 3.967 5 H 0.110 0.890 6 N -0.360 5.360 7 C 0.376 3.624 8 O -0.438 6.438 9 C -0.237 4.237 10 C -0.192 4.192 11 C -0.148 4.148 12 N -0.127 5.127 13 C -0.072 4.072 14 C -0.066 4.066 15 C -0.194 4.194 16 C 0.050 3.950 17 N -0.320 5.320 18 C -0.353 4.353 19 H 0.093 0.907 20 C -0.204 4.204 21 N -0.564 5.564 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.231 0.769 30 H 0.164 0.836 31 H 0.183 0.817 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.191 0.809 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.511 9.545 -21.136 23.327 hybrid contribution 0.066 0.734 1.062 1.292 sum 2.576 10.278 -20.074 22.699 Atomic orbital electron populations 1.22207 0.97813 1.01477 0.99799 1.21110 0.92537 0.94793 0.86945 0.94628 1.22082 0.97367 0.90871 0.86373 0.88981 1.45838 1.69033 1.14848 1.06291 1.17345 0.76668 0.86430 0.81912 1.90753 1.50714 1.19610 1.82691 1.20470 1.15058 0.94996 0.93181 1.22093 1.06032 0.93792 0.97260 1.21714 1.10122 0.94257 0.88673 1.43599 1.52150 1.09507 1.07415 1.22091 1.02995 1.04188 0.77900 1.21777 1.01613 0.90865 0.92323 1.23386 0.96937 0.99505 0.99569 1.21397 0.95555 0.89385 0.88703 1.44609 1.58312 1.29030 1.00098 1.18965 1.36031 0.99841 0.80486 0.90671 1.24819 1.02267 0.95401 0.97901 1.69960 1.51277 1.04296 1.30835 0.86153 0.77221 0.77802 0.84864 1.21696 1.21691 1.20656 0.92901 0.92763 0.94373 0.76886 0.83617 0.81747 0.90752 0.89657 0.89696 0.80906 0.91891 0.92067 0.95365 0.91144 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.15 37.15 0.34 -2.67 16 2 C 0.15 3.22 3.50 -66.70 -0.23 2.98 16 3 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 4 C 0.14 2.67 2.79 -66.09 -0.18 2.49 16 5 H 0.09 1.93 7.33 -51.93 -0.38 1.55 16 6 N -0.71 -11.65 5.19 -53.15 -0.28 -11.92 16 7 C 0.59 10.03 7.81 -12.59 -0.10 9.93 16 8 O -0.56 -11.40 16.60 5.25 0.09 -11.31 16 9 C -0.23 -3.12 6.29 -103.35 -0.65 -3.77 16 10 C -0.17 -1.85 10.56 -37.50 -0.40 -2.25 16 11 C -0.02 -0.19 11.34 -16.82 -0.19 -0.38 16 12 N -0.45 -3.95 3.09 -124.54 -0.38 -4.33 16 13 C 0.07 0.30 11.03 59.84 0.66 0.96 16 14 C 0.07 0.80 11.12 -16.84 -0.19 0.61 16 15 C -0.15 -3.20 6.77 -24.59 -0.17 -3.36 16 16 C 0.17 4.37 5.42 -2.53 -0.01 4.36 16 17 N -0.59 -15.20 3.14 -162.22 -0.51 -15.71 16 18 C -0.22 -6.23 9.88 -15.06 -0.15 -6.38 16 19 H 0.08 2.02 7.85 -52.49 -0.41 1.60 16 20 C -0.01 -0.20 5.40 -17.43 -0.09 -0.30 16 21 N -0.92 -27.18 10.69 55.49 0.59 -26.59 16 22 Si 0.91 22.16 29.56 -169.99 -5.03 17.14 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 1.09 8.06 -51.93 -0.42 0.67 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.40 5.57 7.46 -40.82 -0.30 5.27 16 30 H 0.15 1.37 7.69 -52.49 -0.40 0.97 16 31 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.28 8.13 -51.93 -0.42 -0.15 16 34 H 0.08 0.22 8.13 -51.93 -0.42 -0.20 16 35 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 39 H 0.07 1.93 6.94 -51.93 -0.36 1.57 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -34.14 333.14 -7.90 -42.04 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.04 Total: 3.45 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.36 Total: 2.21 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.58 Total: -58.55 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.14 -7.90 -42.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088522157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.986 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds