Wall clock time and date at job start Mon Mar 30 2020 02:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36937 * 125.65098 * 204.09440 * 5 4 2 7 7 H 1.08000 * 120.00262 * 180.02562 * 6 5 4 8 8 C 1.38813 * 119.99548 * 0.03593 * 6 5 4 9 9 N 1.31615 * 120.00732 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99599 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46881 * 90.00394 * 10 8 6 12 12 H 1.48499 * 109.47149 * 210.00031 * 10 8 6 13 13 H 1.48496 * 109.47418 * 330.00294 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 C 1.53001 * 110.71941 * 219.26699 * 15 14 5 18 18 N 1.46496 * 109.47222 * 291.15682 * 17 15 14 19 19 C 1.34779 * 119.99713 * 180.02562 * 18 17 15 20 20 O 1.21622 * 120.00536 * 0.02562 * 19 18 17 21 21 C 1.47264 * 119.99566 * 179.97438 * 19 18 17 22 22 C 1.46688 * 126.94270 * 179.97438 * 21 19 18 23 23 C 1.34479 * 106.33532 * 180.02562 * 22 21 19 24 24 N 1.36445 * 108.85575 * 359.97438 * 23 22 21 25 25 H 0.97006 * 124.84862 * 180.02562 * 24 23 22 26 26 C 1.34659 * 110.29815 * 359.72797 * 24 23 22 27 27 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 28 28 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 29 29 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 30 30 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 31 31 H 1.09003 * 110.36973 * 323.75054 * 4 2 1 32 32 H 0.96996 * 120.00556 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 34 34 H 1.09005 * 110.01447 * 118.43174 * 14 5 4 35 35 H 1.08999 * 109.47061 * 51.15825 * 17 15 14 36 36 H 1.09006 * 109.46767 * 171.15478 * 17 15 14 37 37 H 0.97003 * 120.00294 * 359.97438 * 18 17 15 38 38 H 1.08001 * 126.83040 * 359.96460 * 22 21 19 39 39 H 1.08009 * 125.57054 * 180.02562 * 23 22 21 40 40 H 1.08002 * 125.80277 * 180.29873 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5667 -1.6073 7 1 5.4125 -1.8770 -1.1944 8 6 4.2960 -1.4957 -2.9834 9 7 3.1404 -1.1170 -3.4868 10 14 5.7107 -1.9365 -4.1209 11 1 5.6569 -3.3861 -4.4388 12 1 5.6003 -1.1502 -5.3758 13 1 6.9993 -1.6237 -3.4525 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 6 2.2349 0.0839 2.4364 18 7 2.7054 -0.7207 3.5665 19 6 2.9091 -0.1425 4.7668 20 8 2.7018 1.0471 4.9119 21 6 3.3816 -0.9515 5.9030 22 6 3.6524 -0.4832 7.2665 23 6 4.0617 -1.5591 7.9617 24 7 4.0622 -2.6444 7.1347 25 1 4.3179 -3.5422 7.3985 26 6 3.6506 -2.2924 5.9018 27 1 -0.3633 0.4520 0.9229 28 1 -0.3633 0.5732 -0.8529 29 1 -0.3634 -1.0253 -0.0699 30 1 2.1559 -0.1720 -2.0837 31 1 1.4519 -1.6704 -1.4025 32 1 3.0231 -1.0670 -4.4483 33 1 4.2426 -0.5998 1.0598 34 1 3.6662 -2.2885 1.0422 35 1 2.9555 0.8748 2.2284 36 1 1.2699 0.5271 2.6827 37 1 2.8697 -1.6697 3.4512 38 1 3.5454 0.5253 7.6379 39 1 4.3432 -1.5636 9.0045 40 1 3.5525 -2.9557 5.0552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092626732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:22 Heat of formation + Delta-G solvation = 27.495951 kcal Electronic energy + Delta-G solvation = -21167.849622 eV Core-core repulsion = 17983.716345 eV Total energy + Delta-G solvation = -3184.133277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23492 -39.11433 -37.79141 -34.49802 -32.91201 -31.21387 -30.72364 -29.86272 -28.58936 -25.97772 -25.08796 -23.32444 -22.18741 -20.78282 -19.93202 -19.79059 -19.11952 -18.67201 -16.82293 -16.19662 -15.65949 -15.14275 -14.83352 -14.38833 -14.10773 -13.95379 -13.71053 -13.51212 -13.05856 -12.94311 -12.61451 -12.58038 -12.24185 -11.84394 -11.51666 -11.36591 -11.09906 -10.85367 -10.78647 -10.19457 -10.01645 -9.90467 -9.83527 -9.67541 -9.33460 -9.03535 -8.78545 -8.63741 -8.52491 -6.81361 -5.63799 -3.05500 1.68125 2.30804 3.00027 3.40382 3.45422 3.47524 3.47964 3.68304 4.49740 4.73307 4.86930 5.00435 5.17515 5.31606 5.33303 5.41439 5.52293 5.62895 5.76074 5.83405 5.87513 5.94287 6.13054 6.21966 6.25515 6.32535 6.52319 6.55584 6.60594 6.64688 6.68631 6.71643 6.85875 6.99791 7.20069 7.55945 7.64800 7.77651 7.88675 8.38425 8.50962 9.23792 9.84739 10.49960 11.39856 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.003769 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.179256 B = 7427.863616 C = 8306.558574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.223 4.223 7 H 0.076 0.924 8 C -0.011 4.011 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.290 1.290 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.142 3.858 15 C -0.110 4.110 16 H 0.075 0.925 17 C 0.135 3.865 18 N -0.725 5.725 19 C 0.585 3.415 20 O -0.550 6.550 21 C -0.225 4.225 22 C -0.143 4.143 23 C -0.026 4.026 24 N -0.553 5.553 25 H 0.416 0.584 26 C 0.045 3.955 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.012 0.988 32 H 0.252 0.748 33 H 0.025 0.975 34 H 0.016 0.984 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.397 0.603 38 H 0.147 0.853 39 H 0.169 0.831 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 -3.884 19.409 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.035 3.965 5 N -0.331 5.331 6 C -0.351 4.351 7 H 0.094 0.906 8 C -0.207 4.207 9 N -0.570 5.570 10 Si 0.744 3.256 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.129 4.129 16 H 0.094 0.906 17 C 0.011 3.989 18 N -0.375 5.375 19 C 0.373 3.627 20 O -0.429 6.429 21 C -0.236 4.236 22 C -0.167 4.167 23 C -0.153 4.153 24 N -0.147 5.147 25 H 0.253 0.747 26 C -0.091 4.091 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.231 0.769 38 H 0.165 0.835 39 H 0.186 0.814 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.839 -3.134 19.322 19.660 hybrid contribution 0.946 -1.265 -0.526 1.665 sum -0.893 -4.399 18.796 19.324 Atomic orbital electron populations 1.21650 0.95522 1.01349 1.00678 1.22598 0.94580 0.99569 0.96384 0.91002 1.21981 0.84006 0.95836 0.94712 1.44489 1.10563 1.78961 0.99050 1.19077 0.91088 1.37690 0.87238 0.90572 1.24782 0.97270 1.02013 0.96612 1.69794 1.22430 1.53785 1.11023 0.86082 0.81278 0.77769 0.80430 1.21694 1.21642 1.20719 1.21327 0.93587 0.97000 0.86538 1.22488 0.98488 0.98169 0.93740 0.90625 1.21407 0.99503 0.93821 0.84159 1.45910 1.68720 1.12806 1.10091 1.17419 0.76843 0.86709 0.81722 1.90752 1.52578 1.15482 1.84091 1.20562 1.14392 0.93099 0.95536 1.21974 1.04241 0.98733 0.91751 1.21795 1.10026 0.86477 0.97038 1.41595 1.52689 1.11052 1.09376 0.74729 1.21996 1.02294 0.96079 0.88750 0.93613 0.92695 0.93014 0.87644 0.96967 0.93745 0.95758 0.96570 0.91354 0.91700 0.76931 0.83527 0.81386 0.81015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.31 37.16 0.35 -1.75 16 2 C -0.11 -2.08 3.09 -88.47 -0.27 -2.35 16 3 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 4 C 0.16 3.83 5.36 -2.53 -0.01 3.82 16 5 N -0.61 -15.46 3.39 -170.07 -0.58 -16.03 16 6 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 7 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 8 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 9 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 10 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.14 2.89 6.64 -3.07 -0.02 2.87 16 15 C -0.11 -1.85 2.45 -88.79 -0.22 -2.07 16 16 H 0.08 1.19 8.04 -51.93 -0.42 0.78 16 17 C 0.13 2.10 5.01 -4.04 -0.02 2.08 16 18 N -0.72 -10.07 5.42 -61.43 -0.33 -10.40 16 19 C 0.58 9.10 7.81 -12.59 -0.10 9.00 16 20 O -0.55 -10.69 16.97 5.26 0.09 -10.60 16 21 C -0.23 -2.84 6.29 -103.35 -0.65 -3.49 16 22 C -0.14 -1.62 10.97 -37.50 -0.41 -2.03 16 23 C -0.03 -0.20 11.89 -16.83 -0.20 -0.40 16 24 N -0.55 -3.73 5.90 -12.85 -0.08 -3.80 16 25 H 0.42 1.33 8.96 -40.82 -0.37 0.97 16 26 C 0.05 0.40 11.40 -16.84 -0.19 0.21 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 31 H 0.01 0.31 7.98 -51.93 -0.41 -0.10 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.02 0.51 7.73 -51.93 -0.40 0.11 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 1.19 8.00 -51.93 -0.42 0.77 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.40 4.53 7.35 -40.82 -0.30 4.23 16 38 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.17 1.06 7.45 -52.49 -0.39 0.67 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -34.71 330.96 -8.31 -43.01 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.93 Total: 2.96 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.00 Total: -0.89 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.43 Total: -56.53 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.71 -8.31 -43.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092626732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.510 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds