Wall clock time and date at job start Mon Mar 30 2020 02:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.91790 * 2 1 4 4 C 1.54909 * 110.99934 * 236.09759 * 2 1 3 5 5 N 1.47436 * 104.83202 * 204.91794 * 4 2 1 6 6 C 1.34773 * 125.64984 * 204.09573 * 5 4 2 7 7 O 1.21694 * 119.99867 * 174.49506 * 6 5 4 8 8 C 1.46682 * 119.99870 * 354.49183 * 6 5 4 9 9 C 1.37866 * 126.23135 * 173.26306 * 8 6 5 10 10 C 1.39840 * 107.08487 * 179.97438 * 9 8 6 11 11 C 1.35453 * 107.86343 * 0.02562 * 10 9 8 12 12 N 1.35535 * 108.86844 * 359.76665 * 11 10 9 13 13 H 0.96999 * 125.67102 * 180.26020 * 12 11 10 14 14 C 1.47026 * 108.69947 * 24.13053 * 5 4 2 15 15 C 1.54323 * 107.27109 * 358.94345 * 14 5 4 16 16 H 1.08998 * 110.72261 * 96.34956 * 15 14 5 17 17 C 1.53004 * 110.71581 * 219.44457 * 15 14 5 18 18 N 1.46499 * 109.47221 * 293.54649 * 17 15 14 19 19 C 1.36932 * 120.00213 * 180.27872 * 18 17 15 20 20 H 1.07999 * 120.00098 * 359.71999 * 19 18 17 21 21 C 1.38810 * 120.00077 * 179.72050 * 19 18 17 22 22 N 1.31617 * 120.00107 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00081 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47078 * 90.00380 * 23 21 19 25 25 H 1.48496 * 109.47346 * 210.00125 * 23 21 19 26 26 H 1.48502 * 109.47366 * 330.00626 * 23 21 19 27 27 H 1.09003 * 109.46860 * 296.09999 * 1 2 3 28 28 H 1.08999 * 109.46831 * 56.09076 * 1 2 3 29 29 H 1.08995 * 109.47313 * 176.10102 * 1 2 3 30 30 H 1.09001 * 110.36934 * 86.08406 * 4 2 1 31 31 H 1.09000 * 110.46549 * 323.80010 * 4 2 1 32 32 H 1.08002 * 126.45863 * 359.93242 * 9 8 6 33 33 H 1.07997 * 126.06411 * 179.97438 * 10 9 8 34 34 H 1.07994 * 125.56311 * 179.97438 * 11 10 9 35 35 H 1.08999 * 109.87956 * 239.52130 * 14 5 4 36 36 H 1.08999 * 110.00856 * 118.43379 * 14 5 4 37 37 H 1.09001 * 109.47122 * 173.54841 * 17 15 14 38 38 H 1.08997 * 109.47297 * 53.54572 * 17 15 14 39 39 H 0.97004 * 119.99766 * 359.97438 * 18 17 15 40 40 H 0.97001 * 120.00502 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7734 6 6 4.4476 -1.5618 -1.5941 7 8 5.5446 -1.8137 -1.1314 8 6 4.2359 -1.6048 -3.0449 9 6 5.2085 -1.7853 -4.0053 10 6 4.5682 -1.7600 -5.2482 11 6 3.2451 -1.5681 -5.0302 12 7 3.0296 -1.4770 -3.6953 13 1 2.1686 -1.3427 -3.2692 14 6 3.4674 -1.2743 0.6960 15 6 2.0861 -0.8081 1.2022 16 1 1.4478 -1.6633 1.4239 17 6 2.2350 0.0874 2.4338 18 7 2.7616 -0.7014 3.5504 19 6 2.9740 -0.1094 4.7667 20 1 2.7577 0.9400 4.9017 21 6 3.4675 -0.8582 5.8263 22 7 3.7316 -2.1371 5.6617 23 14 3.7579 -0.0506 7.4854 24 1 2.5268 -0.1552 8.3092 25 1 4.8778 -0.7351 8.1800 26 1 4.1000 1.3807 7.2862 27 1 -0.3633 0.4521 0.9229 28 1 -0.3633 0.5733 -0.8529 29 1 -0.3634 -1.0252 -0.0699 30 1 2.1560 -0.1720 -2.0837 31 1 1.4524 -1.6704 -1.4043 32 1 6.2657 -1.9201 -3.8307 33 1 5.0442 -1.8726 -6.2111 34 1 2.4856 -1.5022 -5.7951 35 1 4.2426 -0.6000 1.0599 36 1 3.6662 -2.2886 1.0423 37 1 1.2620 0.4968 2.7052 38 1 2.9224 0.9029 2.2091 39 1 2.9556 -1.6441 3.4292 40 1 4.0768 -2.6603 6.4020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105817447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:55 Heat of formation + Delta-G solvation = 27.820738 kcal Electronic energy + Delta-G solvation = -21392.314601 eV Core-core repulsion = 18208.195408 eV Total energy + Delta-G solvation = -3184.119193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51656 -39.67070 -37.77323 -34.75154 -33.03576 -31.61152 -31.17732 -29.86037 -28.70190 -26.64725 -25.55191 -23.47630 -22.12870 -21.12563 -20.75050 -20.17907 -19.86917 -17.94883 -17.12606 -16.31701 -16.04041 -15.26820 -14.82876 -14.47018 -14.29956 -13.89863 -13.83073 -13.56542 -13.29182 -13.04283 -12.86509 -12.75859 -12.53564 -12.41555 -12.13064 -12.02962 -11.49276 -11.12699 -10.90365 -10.68067 -10.50975 -10.46220 -10.05013 -9.99729 -9.68162 -9.18921 -8.88805 -8.71954 -8.33909 -6.94110 -5.76390 -3.05983 1.38420 2.58973 2.82107 3.03654 3.37349 3.44158 3.49274 3.51389 4.30585 4.37400 4.54882 4.69186 4.78768 4.86854 5.05989 5.12608 5.18535 5.30242 5.38047 5.41143 5.54810 5.61142 5.69173 5.89187 5.90501 5.95145 5.99023 6.08921 6.11234 6.27479 6.33588 6.36585 6.57178 6.64917 6.76420 6.78988 7.16281 7.48686 7.69482 8.15924 8.41689 9.53105 10.09186 10.43580 11.46282 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028569 B = 0.003738 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.850567 B = 7488.527794 C = 8253.367812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.090 0.910 4 C 0.091 3.909 5 N -0.619 5.619 6 C 0.598 3.402 7 O -0.524 6.524 8 C -0.046 4.046 9 C -0.111 4.111 10 C -0.212 4.212 11 C 0.013 3.987 12 N -0.544 5.544 13 H 0.417 0.583 14 C 0.117 3.883 15 C -0.100 4.100 16 H 0.087 0.913 17 C 0.165 3.835 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.170 0.830 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.021 0.979 39 H 0.384 0.616 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 2.492 -22.457 23.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.108 0.892 4 C -0.032 4.032 5 N -0.353 5.353 6 C 0.387 3.613 7 O -0.400 6.400 8 C -0.159 4.159 9 C -0.138 4.138 10 C -0.236 4.236 11 C -0.123 4.123 12 N -0.144 5.144 13 H 0.259 0.741 14 C -0.004 4.004 15 C -0.119 4.119 16 H 0.105 0.895 17 C 0.037 3.963 18 N -0.377 5.377 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.187 0.813 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.218 0.782 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.526 2.470 -21.980 23.061 hybrid contribution -0.236 0.109 1.003 1.036 sum -6.762 2.579 -20.977 22.191 Atomic orbital electron populations 1.21718 0.93464 1.02147 1.02502 1.22350 0.96284 0.99578 0.93330 0.89215 1.22606 0.84190 0.98040 0.98396 1.48463 1.11675 1.67096 1.08062 1.16745 0.83440 0.77429 0.83673 1.90876 1.23262 1.49899 1.75929 1.20471 0.86099 1.17204 0.92127 1.21339 0.98869 1.02596 0.90953 1.20900 0.93187 1.11199 0.98314 1.22050 0.98495 1.07093 0.84647 1.42693 1.09038 1.55797 1.06911 0.74109 1.22085 0.98550 1.02741 0.77073 1.22539 0.95030 0.99244 0.95084 0.89468 1.20629 0.96725 0.92894 0.86043 1.42349 1.77925 1.09980 1.07442 1.19197 1.36321 0.94124 0.87703 0.91176 1.24749 1.01978 0.95813 0.98301 1.69654 1.50735 1.06055 1.31542 0.86187 0.77420 0.78329 0.84224 1.21738 1.21733 1.20746 0.91259 0.92624 0.92327 0.91145 0.91233 0.83488 0.83994 0.81324 0.90226 0.90878 0.95775 0.96086 0.78210 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.31 37.16 0.35 -0.89 16 2 C -0.10 -1.06 3.09 -88.47 -0.27 -1.33 16 3 H 0.09 1.01 8.05 -51.93 -0.42 0.60 16 4 C 0.09 0.92 4.71 -2.52 -0.01 0.91 16 5 N -0.62 -8.99 3.33 -172.05 -0.57 -9.57 16 6 C 0.60 9.76 7.81 -12.85 -0.10 9.66 16 7 O -0.52 -10.69 17.23 5.19 0.09 -10.60 16 8 C -0.05 -0.60 6.82 -81.98 -0.56 -1.16 16 9 C -0.11 -1.38 10.66 -39.12 -0.42 -1.80 16 10 C -0.21 -2.02 10.81 -39.98 -0.43 -2.45 16 11 C 0.01 0.10 11.89 -16.91 -0.20 -0.10 16 12 N -0.54 -5.06 5.36 -9.39 -0.05 -5.11 16 13 H 0.42 2.93 5.37 -40.82 -0.22 2.71 16 14 C 0.12 1.98 6.16 -3.06 -0.02 1.96 16 15 C -0.10 -1.50 2.48 -88.78 -0.22 -1.72 16 16 H 0.09 1.32 8.04 -51.93 -0.42 0.91 16 17 C 0.16 3.16 5.58 -4.04 -0.02 3.14 16 18 N -0.73 -18.30 5.45 -59.91 -0.33 -18.63 16 19 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 23 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 30 H 0.07 0.58 6.22 -51.93 -0.32 0.26 16 31 H 0.07 0.58 7.68 -51.93 -0.40 0.18 16 32 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.08 1.55 7.77 -51.93 -0.40 1.15 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 39 H 0.38 10.13 7.52 -40.82 -0.31 9.83 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -34.29 329.76 -8.18 -42.47 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.83 Total: 7.76 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.16 Total: -1.16 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.22 Total: -60.98 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.29 -8.18 -42.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105817447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.287 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds