Wall clock time and date at job start Mon Mar 30 2020 02:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.91790 * 2 1 4 4 C 1.54909 * 110.99934 * 236.09759 * 2 1 3 5 5 N 1.47436 * 104.83202 * 204.91794 * 4 2 1 6 6 C 1.34773 * 125.64984 * 204.09573 * 5 4 2 7 7 O 1.21694 * 119.99867 * 174.49506 * 6 5 4 8 8 C 1.46682 * 119.99870 * 354.49183 * 6 5 4 9 9 C 1.37866 * 126.23135 * 173.26306 * 8 6 5 10 10 C 1.39840 * 107.08487 * 179.97438 * 9 8 6 11 11 C 1.35453 * 107.86343 * 0.02562 * 10 9 8 12 12 N 1.35535 * 108.86844 * 359.76665 * 11 10 9 13 13 H 0.96999 * 125.67102 * 180.26020 * 12 11 10 14 14 C 1.47026 * 108.69947 * 24.13053 * 5 4 2 15 15 C 1.54323 * 107.27109 * 358.94345 * 14 5 4 16 16 H 1.08998 * 110.72261 * 96.34956 * 15 14 5 17 17 C 1.53004 * 110.71581 * 219.44457 * 15 14 5 18 18 N 1.46499 * 109.47221 * 293.54649 * 17 15 14 19 19 C 1.36932 * 120.00213 * 180.27872 * 18 17 15 20 20 H 1.07999 * 120.00098 * 359.71999 * 19 18 17 21 21 C 1.38810 * 120.00077 * 179.72050 * 19 18 17 22 22 N 1.31617 * 120.00107 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00081 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47078 * 90.00380 * 23 21 19 25 25 H 1.48496 * 109.47346 * 210.00125 * 23 21 19 26 26 H 1.48502 * 109.47366 * 330.00626 * 23 21 19 27 27 H 1.09003 * 109.46860 * 296.09999 * 1 2 3 28 28 H 1.08999 * 109.46831 * 56.09076 * 1 2 3 29 29 H 1.08995 * 109.47313 * 176.10102 * 1 2 3 30 30 H 1.09001 * 110.36934 * 86.08406 * 4 2 1 31 31 H 1.09000 * 110.46549 * 323.80010 * 4 2 1 32 32 H 1.08002 * 126.45863 * 359.93242 * 9 8 6 33 33 H 1.07997 * 126.06411 * 179.97438 * 10 9 8 34 34 H 1.07994 * 125.56311 * 179.97438 * 11 10 9 35 35 H 1.08999 * 109.87956 * 239.52130 * 14 5 4 36 36 H 1.08999 * 110.00856 * 118.43379 * 14 5 4 37 37 H 1.09001 * 109.47122 * 173.54841 * 17 15 14 38 38 H 1.08997 * 109.47297 * 53.54572 * 17 15 14 39 39 H 0.97004 * 119.99766 * 359.97438 * 18 17 15 40 40 H 0.97001 * 120.00502 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7734 6 6 4.4476 -1.5618 -1.5941 7 8 5.5446 -1.8137 -1.1314 8 6 4.2359 -1.6048 -3.0449 9 6 5.2085 -1.7853 -4.0053 10 6 4.5682 -1.7600 -5.2482 11 6 3.2451 -1.5681 -5.0302 12 7 3.0296 -1.4770 -3.6953 13 1 2.1686 -1.3427 -3.2692 14 6 3.4674 -1.2743 0.6960 15 6 2.0861 -0.8081 1.2022 16 1 1.4478 -1.6633 1.4239 17 6 2.2350 0.0874 2.4338 18 7 2.7616 -0.7014 3.5504 19 6 2.9740 -0.1094 4.7667 20 1 2.7577 0.9400 4.9017 21 6 3.4675 -0.8582 5.8263 22 7 3.7316 -2.1371 5.6617 23 14 3.7579 -0.0506 7.4854 24 1 2.5268 -0.1552 8.3092 25 1 4.8778 -0.7351 8.1800 26 1 4.1000 1.3807 7.2862 27 1 -0.3633 0.4521 0.9229 28 1 -0.3633 0.5733 -0.8529 29 1 -0.3634 -1.0252 -0.0699 30 1 2.1560 -0.1720 -2.0837 31 1 1.4524 -1.6704 -1.4043 32 1 6.2657 -1.9201 -3.8307 33 1 5.0442 -1.8726 -6.2111 34 1 2.4856 -1.5022 -5.7951 35 1 4.2426 -0.6000 1.0599 36 1 3.6662 -2.2886 1.0423 37 1 1.2620 0.4968 2.7052 38 1 2.9224 0.9029 2.2091 39 1 2.9556 -1.6441 3.4292 40 1 4.0768 -2.6603 6.4020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105817447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:55 Heat of formation + Delta-G solvation = 3.779621 kcal Electronic energy + Delta-G solvation = -21393.357102 eV Core-core repulsion = 18208.195408 eV Total energy + Delta-G solvation = -3185.161694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.40054 -40.77079 -39.05310 -36.53638 -34.39369 -33.12126 -32.18078 -31.08787 -29.93736 -27.51751 -27.15917 -25.16672 -23.42883 -22.10995 -21.73593 -21.08348 -21.02448 -19.32103 -18.77156 -17.60924 -17.09943 -16.68852 -16.33614 -15.71518 -15.47647 -15.25195 -15.06324 -14.82222 -14.65192 -14.20185 -14.08117 -13.70370 -13.52369 -13.39418 -13.34431 -13.16471 -12.96516 -12.77376 -12.52599 -12.17150 -11.99467 -11.93235 -11.64238 -11.42347 -11.31896 -10.96416 -10.04087 -9.88008 -9.18524 -9.03143 -7.97167 -5.26678 0.40922 1.45336 1.47730 1.56056 1.73274 1.82141 2.21423 2.30597 2.54015 3.29019 3.35109 3.39313 3.63932 3.76855 4.07824 4.12481 4.21416 4.33477 4.36364 4.41557 4.46418 4.51853 4.54102 4.71174 4.77672 4.81508 4.96472 5.02687 5.11502 5.14002 5.19602 5.29226 5.32464 5.46311 5.49753 5.75053 5.91770 6.24516 6.34647 6.54275 6.94286 7.30835 8.06053 8.28235 9.26422 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028569 B = 0.003738 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.850567 B = 7488.527794 C = 8253.367812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 H 0.089 0.911 4 C 0.090 3.910 5 N -0.618 5.618 6 C 0.589 3.411 7 O -0.586 6.586 8 C -0.080 4.080 9 C -0.126 4.126 10 C -0.226 4.226 11 C 0.049 3.951 12 N -0.531 5.531 13 H 0.429 0.571 14 C 0.122 3.878 15 C -0.089 4.089 16 H 0.090 0.910 17 C 0.165 3.835 18 N -0.747 5.747 19 C -0.247 4.247 20 H 0.078 0.922 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.975 3.025 24 H -0.283 1.283 25 H -0.298 1.298 26 H -0.269 1.269 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.165 0.835 34 H 0.221 0.779 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.015 0.985 39 H 0.373 0.627 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 3.791 -25.286 27.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.107 0.893 4 C -0.032 4.032 5 N -0.350 5.350 6 C 0.382 3.618 7 O -0.467 6.467 8 C -0.193 4.193 9 C -0.153 4.153 10 C -0.250 4.250 11 C -0.088 4.088 12 N -0.133 5.133 13 H 0.274 0.726 14 C -0.001 4.001 15 C -0.108 4.108 16 H 0.108 0.892 17 C 0.038 3.962 18 N -0.390 5.390 19 C -0.378 4.378 20 H 0.096 0.904 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.804 3.196 24 H -0.210 1.210 25 H -0.224 1.224 26 H -0.194 1.194 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.149 0.851 33 H 0.183 0.817 34 H 0.237 0.763 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.033 0.967 39 H 0.204 0.796 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.551 3.825 -24.838 26.884 hybrid contribution 0.667 -0.261 1.734 1.876 sum -8.884 3.565 -23.104 25.008 Atomic orbital electron populations 1.21713 0.90899 1.03312 1.03391 1.22343 0.98174 0.98793 0.91048 0.89305 1.22930 0.81847 0.99520 0.98872 1.48492 1.13299 1.66544 1.06662 1.17323 0.82821 0.76447 0.85241 1.90823 1.25725 1.52875 1.77279 1.19938 0.88163 1.20970 0.90196 1.21531 0.98579 1.02546 0.92677 1.21231 0.94045 1.11728 0.97946 1.22868 0.98905 1.02546 0.84500 1.42636 1.08252 1.55036 1.07343 0.72644 1.21795 0.98811 1.00229 0.79234 1.22389 0.94035 0.99315 0.95065 0.89175 1.20782 0.96449 0.92921 0.86042 1.42593 1.78197 1.09913 1.08272 1.19641 1.34889 0.94493 0.88799 0.90449 1.25608 1.02746 0.96453 1.02103 1.69823 1.52421 1.07550 1.32308 0.85121 0.77037 0.77766 0.79721 1.20976 1.22437 1.19431 0.92313 0.89496 0.91389 0.88240 0.88338 0.85060 0.81735 0.76252 0.93902 0.93620 0.94405 0.96725 0.79553 0.94026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.31 71.98 0.67 -1.18 16 2 C -0.08 -1.65 3.09 -9.40 -0.03 -1.68 16 3 H 0.09 1.80 8.05 -2.39 -0.02 1.78 16 4 C 0.09 1.57 4.71 86.85 0.41 1.98 16 5 N -0.62 -18.21 3.33 -816.45 -2.72 -20.93 16 6 C 0.59 20.13 7.81 86.45 0.67 20.80 16 7 O -0.59 -26.09 17.23 -4.33 -0.07 -26.17 16 8 C -0.08 -2.05 6.82 40.35 0.28 -1.78 16 9 C -0.13 -3.10 10.66 22.57 0.24 -2.86 16 10 C -0.23 -3.63 10.81 22.01 0.24 -3.39 16 11 C 0.05 0.53 11.89 83.48 0.99 1.52 16 12 N -0.53 -7.94 5.36 -183.63 -0.98 -8.92 16 13 H 0.43 3.98 5.37 -92.71 -0.50 3.48 16 14 C 0.12 4.41 6.16 86.73 0.53 4.94 16 15 C -0.09 -2.68 2.48 -9.60 -0.02 -2.70 16 16 H 0.09 2.71 8.04 -2.39 -0.02 2.69 16 17 C 0.16 6.39 5.58 86.38 0.48 6.87 16 18 N -0.75 -38.51 5.45 -343.46 -1.87 -40.38 16 19 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 22 N -0.97 -61.13 13.06 21.65 0.28 -60.84 16 23 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 24 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 25 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.84 8.07 -2.39 -0.02 0.82 16 30 H 0.10 1.21 6.22 -2.39 -0.01 1.20 16 31 H 0.10 1.23 7.68 -2.39 -0.02 1.21 16 32 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 34 H 0.22 0.16 8.06 -2.91 -0.02 0.14 16 35 H 0.04 1.83 7.77 -2.39 -0.02 1.81 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.01 0.60 8.06 -2.39 -0.02 0.58 16 39 H 0.37 20.65 7.52 -92.71 -0.70 19.95 16 40 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -80.65 329.76 2.29 -78.35 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.14 Total: 24.46 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.77 Total: 5.29 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -5.29 Total: -131.08 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.07 Total: -26.17 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -80.65 2.29 -78.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105817447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.134 kcal (2) G-P(sol) polarization free energy of solvation -80.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds