Wall clock time and date at job start Mon Mar 30 2020 02:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47069 * 239.99565 * 2 1 3 5 5 C 1.50706 * 109.46573 * 65.00394 * 4 2 1 6 6 O 1.21274 * 120.00042 * 359.72068 * 5 4 2 7 7 N 1.34777 * 119.99766 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00266 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47425 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.47030 * 180.02562 * 9 8 7 11 11 C 1.36934 * 120.00157 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99751 * 359.97438 * 11 10 9 13 13 C 1.38815 * 120.00390 * 180.02562 * 11 10 9 14 14 N 1.31619 * 119.99884 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99660 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47047 * 90.00824 * 15 13 11 17 17 H 1.48499 * 109.46902 * 210.00127 * 15 13 11 18 18 H 1.48494 * 109.47184 * 330.00371 * 15 13 11 19 19 C 1.50707 * 109.46958 * 119.99836 * 2 1 3 20 20 C 1.38655 * 120.78783 * 59.71991 * 19 2 1 21 21 C 1.38204 * 119.16179 * 179.75216 * 20 19 2 22 22 N 1.31868 * 120.76133 * 0.53705 * 21 20 19 23 23 C 1.31869 * 121.72854 * 359.73253 * 22 21 20 24 24 C 1.38201 * 120.76333 * 359.97438 * 23 22 21 25 25 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46743 * 300.00156 * 1 2 3 27 27 H 1.09000 * 109.47048 * 59.99887 * 1 2 3 28 28 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 29 29 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 30 30 H 0.96999 * 120.00043 * 0.02562 * 7 5 4 31 31 H 1.09004 * 109.47212 * 300.00463 * 8 7 5 32 32 H 1.09000 * 109.46684 * 60.00307 * 8 7 5 33 33 H 1.09000 * 109.46497 * 300.00014 * 9 8 7 34 34 H 1.08987 * 109.47025 * 60.00130 * 9 8 7 35 35 H 0.96999 * 120.00085 * 359.97438 * 10 9 8 36 36 H 0.97000 * 119.99517 * 179.97438 * 14 13 11 37 37 H 1.08004 * 120.41671 * 0.02562 * 20 19 2 38 38 H 1.07992 * 119.61755 * 180.24755 * 21 20 19 39 39 H 1.08000 * 119.62206 * 180.02562 * 23 22 21 40 40 H 1.08007 * 120.41760 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 8 1.0070 1.0845 -2.3635 7 7 1.9853 -0.3914 -3.7001 8 6 1.5973 0.3649 -4.8932 9 6 2.1074 -0.3564 -6.1425 10 7 1.7199 0.4003 -7.3356 11 6 2.0685 -0.0558 -8.5788 12 1 2.6296 -0.9731 -8.6797 13 6 1.7019 0.6614 -9.7093 14 7 2.0375 0.2232 -10.9042 15 14 0.7322 2.2484 -9.5347 16 1 1.6718 3.3923 -9.4178 17 1 -0.1296 2.4359 -10.7295 18 1 -0.1166 2.1786 -8.3182 19 6 2.0323 -0.7104 1.2305 20 6 1.7026 -2.0359 1.4691 21 6 2.1860 -2.6560 2.6057 22 7 2.9429 -1.9988 3.4625 23 6 3.2720 -0.7363 3.2707 24 6 2.8306 -0.0526 2.1538 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6053 -1.7199 -1.2951 29 1 3.1263 -0.7995 -1.2056 30 1 2.4891 -1.2153 -3.7907 31 1 0.5109 0.4424 -4.9370 32 1 2.0313 1.3637 -4.8473 33 1 3.1937 -0.4342 -6.0989 34 1 1.6731 -1.3549 -6.1882 35 1 1.2157 1.2240 -7.2450 36 1 1.7809 0.7243 -11.6942 37 1 1.0796 -2.5782 0.7732 38 1 1.9371 -3.6893 2.7968 39 1 3.8943 -0.2310 3.9945 40 1 3.1031 0.9815 2.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130195106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:52 Heat of formation + Delta-G solvation = -24.573472 kcal Electronic energy + Delta-G solvation = -20233.781180 eV Core-core repulsion = 17047.390004 eV Total energy + Delta-G solvation = -3186.391176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39697 -40.61621 -37.62096 -36.59396 -35.47322 -33.48574 -32.20071 -31.89429 -30.30300 -28.37556 -25.57515 -24.88132 -24.28159 -23.13547 -22.00354 -20.91805 -19.82379 -18.39329 -17.36369 -17.21706 -16.90684 -16.78239 -16.41826 -16.25017 -15.66964 -15.63938 -15.10109 -14.96769 -14.68534 -14.53195 -14.26883 -14.06498 -13.53163 -13.41209 -13.19016 -12.76946 -12.69903 -12.59278 -12.39010 -12.26539 -12.08775 -11.83619 -11.74869 -11.04172 -10.86625 -10.46445 -10.35742 -10.09372 -10.03099 -9.37072 -8.05983 -5.41341 0.25836 0.32232 1.38563 1.40470 1.47753 1.66023 2.13183 2.46102 2.91507 3.25760 3.47425 3.65657 3.69304 3.79276 3.91459 3.98048 4.15654 4.19997 4.21958 4.26036 4.28865 4.47548 4.56608 4.67487 4.74578 4.80344 4.92786 4.95492 5.03394 5.10184 5.10695 5.16530 5.33762 5.45209 5.54246 5.71866 5.83654 6.17104 6.57262 7.02687 7.08629 7.27674 7.77369 7.94680 9.14765 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045221 B = 0.002529 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.037512 B =11069.386722 C =11350.069992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.032 4.032 3 H 0.078 0.922 4 C -0.124 4.124 5 C 0.510 3.490 6 O -0.578 6.578 7 N -0.715 5.715 8 C 0.123 3.877 9 C 0.149 3.851 10 N -0.760 5.760 11 C -0.238 4.238 12 H 0.063 0.937 13 C -0.061 4.061 14 N -0.980 5.980 15 Si 0.953 3.047 16 H -0.278 1.278 17 H -0.294 1.294 18 H -0.253 1.253 19 C -0.035 4.035 20 C -0.166 4.166 21 C 0.088 3.912 22 N -0.520 5.520 23 C 0.088 3.912 24 C -0.175 4.175 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.417 0.583 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.366 0.634 36 H 0.259 0.741 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 -4.213 29.981 30.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.051 4.051 3 H 0.096 0.904 4 C -0.164 4.164 5 C 0.298 3.702 6 O -0.458 6.458 7 N -0.368 5.368 8 C -0.002 4.002 9 C 0.023 3.977 10 N -0.406 5.406 11 C -0.368 4.368 12 H 0.081 0.919 13 C -0.253 4.253 14 N -0.630 5.630 15 Si 0.780 3.220 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.178 1.178 19 C -0.044 4.044 20 C -0.185 4.185 21 C -0.068 4.068 22 N -0.230 5.230 23 C -0.068 4.068 24 C -0.195 4.195 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.254 0.746 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.199 0.801 36 H 0.068 0.932 37 H 0.173 0.827 38 H 0.191 0.809 39 H 0.188 0.812 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.095 -4.076 30.661 30.931 hybrid contribution -0.556 1.096 -1.435 1.890 sum -0.460 -2.980 29.226 29.381 Atomic orbital electron populations 1.21915 0.93687 1.02524 1.02286 1.19818 0.96607 0.98871 0.89769 0.90360 1.21755 1.04474 1.00571 0.89575 1.21206 0.78377 0.85376 0.85224 1.90677 1.41370 1.26667 1.87102 1.45799 1.57763 1.28246 1.04991 1.21188 0.99667 0.95368 0.83999 1.20844 0.98105 0.94622 0.84145 1.42566 1.67830 1.28025 1.02175 1.19007 1.28356 1.06031 0.83454 0.91875 1.25508 1.02467 1.02647 0.94715 1.69871 1.53107 1.42136 0.97879 0.85437 0.78936 0.80046 0.77553 1.20380 1.22049 1.17797 1.20349 0.94406 0.94299 0.95303 1.22243 1.01670 0.95053 0.99580 1.23160 0.92693 1.00898 0.90082 1.67690 1.13566 1.10098 1.31598 1.23095 0.97087 0.90238 0.96406 1.22313 0.99293 1.02300 0.95547 0.91404 0.92804 0.92288 0.85944 0.86731 0.74599 0.92303 0.92291 0.94158 0.94147 0.80053 0.93186 0.82735 0.80894 0.81152 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.75 71.98 0.63 -1.79 16 2 C -0.03 -0.47 2.24 -11.54 -0.03 -0.49 16 3 H 0.08 1.37 7.76 -2.39 -0.02 1.35 16 4 C -0.12 -1.58 4.93 29.85 0.15 -1.44 16 5 C 0.51 11.01 7.55 87.66 0.66 11.67 16 6 O -0.58 -17.37 13.96 -3.01 -0.04 -17.41 16 7 N -0.72 -15.08 5.56 -463.06 -2.57 -17.65 16 8 C 0.12 3.55 5.79 86.38 0.50 4.05 16 9 C 0.15 5.14 6.37 86.38 0.55 5.69 16 10 N -0.76 -34.64 5.41 -343.47 -1.86 -36.50 16 11 C -0.24 -13.32 10.47 84.03 0.88 -12.44 16 12 H 0.06 3.82 8.06 -2.91 -0.02 3.80 16 13 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 14 N -0.98 -62.13 13.97 21.65 0.30 -61.82 16 15 Si 0.95 45.24 27.74 68.60 1.90 47.14 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 18 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 19 C -0.04 -0.47 4.80 -19.66 -0.09 -0.57 16 20 C -0.17 -1.91 8.90 22.36 0.20 -1.71 16 21 C 0.09 1.18 11.18 84.68 0.95 2.12 16 22 N -0.52 -9.05 10.36 -195.85 -2.03 -11.08 16 23 C 0.09 1.27 11.18 84.68 0.95 2.21 16 24 C -0.17 -2.33 9.76 22.36 0.22 -2.11 16 25 H 0.07 0.88 7.47 -2.39 -0.02 0.86 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 1.31 5.94 -2.39 -0.01 1.30 16 28 H 0.12 0.98 7.68 -2.39 -0.02 0.96 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.42 6.19 8.47 -92.71 -0.79 5.40 16 31 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.37 16.19 5.53 -92.71 -0.51 15.68 16 36 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.16 1.07 7.35 -2.91 -0.02 1.05 16 38 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 40 H 0.15 1.49 8.01 -2.91 -0.02 1.47 16 Total: -1.00 -74.50 334.69 1.42 -73.07 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -0.31 Total: 22.17 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.03 Total: 2.08 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -6.16 Total: -127.05 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.04 Total: -17.41 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.14 kcal Total: -74.50 1.42 -73.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130195106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.499 kcal (2) G-P(sol) polarization free energy of solvation -74.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds