Wall clock time and date at job start Mon Mar 30 2020 02:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47080 * 2 1 4 4 C 1.53000 * 109.46924 * 239.99584 * 2 1 3 5 5 C 1.53007 * 109.46708 * 175.00167 * 4 2 1 6 6 H 1.09003 * 109.46546 * 55.00188 * 5 4 2 7 7 C 1.52997 * 109.46929 * 174.99951 * 5 4 2 8 8 N 1.46498 * 109.47018 * 295.00364 * 5 4 2 9 9 C 1.34776 * 119.99649 * 155.00495 * 8 5 4 10 10 O 1.21514 * 120.00572 * 359.97438 * 9 8 5 11 11 C 1.48169 * 119.99642 * 179.97438 * 9 8 5 12 12 C 1.39313 * 119.72181 * 180.02562 * 11 9 8 13 13 C 1.38589 * 119.05712 * 179.76487 * 12 11 9 14 14 C 1.38621 * 118.49157 * 0.47358 * 13 12 11 15 15 C 1.38563 * 119.34902 * 359.48085 * 14 13 12 16 16 N 1.31523 * 120.90497 * 0.30017 * 15 14 13 17 17 N 1.46504 * 109.46542 * 119.99806 * 2 1 3 18 18 C 1.36940 * 119.99852 * 274.99614 * 17 2 1 19 19 H 1.08000 * 119.99991 * 0.02562 * 18 17 2 20 20 C 1.38810 * 119.99520 * 180.02562 * 18 17 2 21 21 N 1.31622 * 119.99628 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00356 * 0.02562 * 20 18 17 23 23 H 1.48489 * 109.47322 * 90.00041 * 22 20 18 24 24 H 1.48503 * 109.47110 * 210.00214 * 22 20 18 25 25 H 1.48499 * 109.46980 * 329.99856 * 22 20 18 26 26 H 1.09001 * 109.47554 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47163 * 300.00476 * 1 2 3 28 28 H 1.08997 * 109.46808 * 60.00210 * 1 2 3 29 29 H 1.08992 * 109.47197 * 55.00778 * 4 2 1 30 30 H 1.09000 * 109.47493 * 295.00190 * 4 2 1 31 31 H 1.08999 * 109.47251 * 180.02562 * 7 5 4 32 32 H 1.09001 * 109.47460 * 300.00385 * 7 5 4 33 33 H 1.08994 * 109.47149 * 60.00125 * 7 5 4 34 34 H 0.96997 * 120.00391 * 334.99510 * 8 5 4 35 35 H 1.07997 * 120.46989 * 359.97438 * 12 11 9 36 36 H 1.08007 * 120.75458 * 180.25504 * 13 12 11 37 37 H 1.08002 * 120.32911 * 179.75965 * 14 13 12 38 38 H 1.07997 * 119.54794 * 180.27857 * 15 14 13 39 39 H 0.96997 * 119.99892 * 95.00217 * 17 2 1 40 40 H 0.97000 * 120.00071 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 1 3.9953 -0.9924 -0.3866 7 6 4.0852 -1.4385 -2.4923 8 7 3.9480 0.7893 -1.4923 9 6 5.1613 1.2133 -1.0866 10 8 5.9372 0.4324 -0.5721 11 6 5.5490 2.6319 -1.2679 12 6 6.8047 3.0639 -0.8469 13 6 7.1549 4.3926 -1.0276 14 6 6.2329 5.2455 -1.6143 15 6 5.0021 4.7469 -2.0097 16 7 4.6972 3.4801 -1.8304 17 7 2.0182 -0.6906 1.1963 18 6 2.1490 -0.0074 2.3758 19 1 1.8919 1.0404 2.4243 20 6 2.6121 -0.6617 3.5091 21 7 2.7373 -0.0051 4.6430 22 14 3.0575 -2.4738 3.4250 23 1 4.4902 -2.6150 3.0612 24 1 2.8183 -3.1043 4.7481 25 1 2.2180 -3.1428 2.3989 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6055 -0.2618 -2.1369 30 1 1.7516 -1.7716 -1.2055 31 1 5.1716 -1.3620 -2.5379 32 1 3.8001 -2.4821 -2.3593 33 1 3.6547 -1.0596 -3.4191 34 1 3.3286 1.4127 -1.9028 35 1 7.4967 2.3725 -0.3893 36 1 8.1228 4.7561 -0.7152 37 1 6.4733 6.2875 -1.7657 38 1 4.2832 5.4075 -2.4712 39 1 2.2489 -1.6317 1.1527 40 1 3.0613 -0.4622 5.4349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133495763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:35 Heat of formation + Delta-G solvation = 6.048483 kcal Electronic energy + Delta-G solvation = -21668.752856 eV Core-core repulsion = 18483.689547 eV Total energy + Delta-G solvation = -3185.063309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54505 -38.97809 -36.88864 -34.56168 -32.86455 -32.03562 -31.57619 -30.37646 -29.15753 -26.37764 -24.78091 -23.56967 -23.24037 -21.47476 -20.40929 -19.74883 -18.18566 -17.45826 -16.77736 -16.05742 -15.61465 -15.04214 -14.90070 -14.63635 -14.12743 -13.88677 -13.57115 -13.50417 -13.26320 -12.91658 -12.60978 -12.35284 -12.14060 -11.99498 -11.93083 -11.65810 -11.19062 -10.86199 -10.60753 -10.45452 -10.23968 -10.09952 -10.08564 -9.89993 -9.50395 -9.49662 -9.28623 -8.84340 -8.70104 -7.17582 -5.68174 -3.02619 0.62395 1.11139 2.92363 3.32575 3.44544 3.48486 3.53067 3.91468 4.15059 4.66169 4.68092 4.77462 4.86381 4.97367 5.04924 5.30598 5.31027 5.38352 5.58168 5.61467 5.63051 5.82353 5.84965 5.87339 5.93556 5.98656 6.07128 6.24716 6.28785 6.37603 6.46174 6.49210 6.58067 6.80061 6.89239 7.05146 7.57035 7.89013 8.07851 8.48523 8.50855 9.29716 10.02588 10.22043 11.50600 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.005539 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.867041 B = 5053.957156 C = 5567.237834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 H 0.056 0.944 4 C -0.134 4.134 5 C 0.141 3.859 6 H 0.100 0.900 7 C -0.162 4.162 8 N -0.695 5.695 9 C 0.571 3.429 10 O -0.529 6.529 11 C 0.088 3.912 12 C -0.112 4.112 13 C -0.082 4.082 14 C -0.156 4.156 15 C 0.096 3.904 16 N -0.459 5.459 17 N -0.745 5.745 18 C -0.236 4.236 19 H 0.087 0.913 20 C 0.004 3.996 21 N -0.936 5.936 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.277 1.277 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.406 0.594 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.359 0.641 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.796 7.495 -18.053 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.074 0.926 4 C -0.173 4.173 5 C 0.036 3.964 6 H 0.118 0.882 7 C -0.220 4.220 8 N -0.345 5.345 9 C 0.355 3.645 10 O -0.405 6.405 11 C -0.050 4.050 12 C -0.133 4.133 13 C -0.108 4.108 14 C -0.176 4.176 15 C -0.064 4.064 16 N -0.170 5.170 17 N -0.389 5.389 18 C -0.366 4.366 19 H 0.105 0.895 20 C -0.191 4.191 21 N -0.585 5.585 22 Si 0.712 3.288 23 H -0.209 1.209 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.242 0.758 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.192 0.808 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.530 6.730 -17.753 19.519 hybrid contribution 0.791 -0.536 0.281 0.996 sum 5.321 6.194 -17.472 19.286 Atomic orbital electron populations 1.22410 0.98970 1.00759 1.00335 1.20214 0.91781 0.95960 0.85453 0.92602 1.22214 0.93657 1.02127 0.99277 1.21071 0.95243 0.80348 0.99699 0.88179 1.22193 1.01644 1.00010 0.98157 1.45768 1.16117 1.11519 1.61126 1.17790 0.82570 0.85777 0.78375 1.90794 1.51587 1.54889 1.43188 1.21292 0.91727 0.94376 0.97654 1.22179 0.96853 0.96773 0.97517 1.21624 0.99984 0.92964 0.96264 1.22345 0.95125 1.01211 0.98964 1.22784 0.95381 0.91487 0.96708 1.67555 1.33588 1.04134 1.11747 1.42778 1.79710 1.09197 1.07183 1.19016 1.36507 0.95336 0.85703 0.89497 1.24634 1.01505 0.97384 0.95594 1.69702 1.52975 1.35511 1.00269 0.86590 0.78676 0.86939 0.76625 1.20947 1.21917 1.20368 0.93675 0.92465 0.94319 0.91402 0.90653 0.92403 0.91729 0.92793 0.75821 0.83384 0.84179 0.84398 0.82160 0.80790 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 2 C 0.18 3.33 2.84 -67.93 -0.19 3.14 16 3 H 0.06 1.13 7.56 -51.93 -0.39 0.74 16 4 C -0.13 -2.00 4.29 -26.73 -0.11 -2.12 16 5 C 0.14 2.27 2.52 -67.93 -0.17 2.10 16 6 H 0.10 2.03 7.05 -51.93 -0.37 1.67 16 7 C -0.16 -2.16 9.48 37.16 0.35 -1.81 16 8 N -0.69 -11.06 4.44 -54.65 -0.24 -11.30 16 9 C 0.57 10.21 7.78 -12.18 -0.09 10.11 16 10 O -0.53 -11.17 15.99 5.35 0.09 -11.09 16 11 C 0.09 1.34 6.75 -83.01 -0.56 0.78 16 12 C -0.11 -1.49 9.63 -39.05 -0.38 -1.87 16 13 C -0.08 -0.81 10.17 -39.31 -0.40 -1.21 16 14 C -0.16 -1.37 10.11 -39.32 -0.40 -1.76 16 15 C 0.10 0.98 11.18 -17.56 -0.20 0.78 16 16 N -0.46 -6.20 9.54 -9.80 -0.09 -6.29 16 17 N -0.75 -17.78 4.30 -53.42 -0.23 -18.01 16 18 C -0.24 -6.80 10.41 -15.06 -0.16 -6.95 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 21 N -0.94 -30.32 13.97 55.49 0.78 -29.55 16 22 Si 0.88 23.04 27.74 -169.99 -4.71 18.33 16 23 H -0.28 -7.50 7.11 56.52 0.40 -7.09 16 24 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 25 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.41 5.72 7.93 -40.82 -0.32 5.39 16 35 H 0.15 1.97 7.64 -52.49 -0.40 1.57 16 36 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.36 8.51 5.66 -40.82 -0.23 8.28 16 40 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -35.26 338.37 -7.33 -42.59 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.96 Total: 11.53 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.05 Total: -1.30 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: 0.21 Total: -65.15 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.71 Total: 18.33 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.26 -7.33 -42.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133495763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.641 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds