Wall clock time and date at job start Mon Mar 30 2020 02:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47080 * 2 1 4 4 C 1.53000 * 109.46924 * 239.99584 * 2 1 3 5 5 C 1.53007 * 109.46708 * 175.00167 * 4 2 1 6 6 H 1.09003 * 109.46546 * 55.00188 * 5 4 2 7 7 C 1.52997 * 109.46929 * 174.99951 * 5 4 2 8 8 N 1.46498 * 109.47018 * 295.00364 * 5 4 2 9 9 C 1.34776 * 119.99649 * 155.00495 * 8 5 4 10 10 O 1.21514 * 120.00572 * 359.97438 * 9 8 5 11 11 C 1.48169 * 119.99642 * 179.97438 * 9 8 5 12 12 C 1.39313 * 119.72181 * 180.02562 * 11 9 8 13 13 C 1.38589 * 119.05712 * 179.76487 * 12 11 9 14 14 C 1.38621 * 118.49157 * 0.47358 * 13 12 11 15 15 C 1.38563 * 119.34902 * 359.48085 * 14 13 12 16 16 N 1.31523 * 120.90497 * 0.30017 * 15 14 13 17 17 N 1.46504 * 109.46542 * 119.99806 * 2 1 3 18 18 C 1.36940 * 119.99852 * 274.99614 * 17 2 1 19 19 H 1.08000 * 119.99991 * 0.02562 * 18 17 2 20 20 C 1.38810 * 119.99520 * 180.02562 * 18 17 2 21 21 N 1.31622 * 119.99628 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00356 * 0.02562 * 20 18 17 23 23 H 1.48489 * 109.47322 * 90.00041 * 22 20 18 24 24 H 1.48503 * 109.47110 * 210.00214 * 22 20 18 25 25 H 1.48499 * 109.46980 * 329.99856 * 22 20 18 26 26 H 1.09001 * 109.47554 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47163 * 300.00476 * 1 2 3 28 28 H 1.08997 * 109.46808 * 60.00210 * 1 2 3 29 29 H 1.08992 * 109.47197 * 55.00778 * 4 2 1 30 30 H 1.09000 * 109.47493 * 295.00190 * 4 2 1 31 31 H 1.08999 * 109.47251 * 180.02562 * 7 5 4 32 32 H 1.09001 * 109.47460 * 300.00385 * 7 5 4 33 33 H 1.08994 * 109.47149 * 60.00125 * 7 5 4 34 34 H 0.96997 * 120.00391 * 334.99510 * 8 5 4 35 35 H 1.07997 * 120.46989 * 359.97438 * 12 11 9 36 36 H 1.08007 * 120.75458 * 180.25504 * 13 12 11 37 37 H 1.08002 * 120.32911 * 179.75965 * 14 13 12 38 38 H 1.07997 * 119.54794 * 180.27857 * 15 14 13 39 39 H 0.96997 * 119.99892 * 95.00217 * 17 2 1 40 40 H 0.97000 * 120.00071 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 1 3.9953 -0.9924 -0.3866 7 6 4.0852 -1.4385 -2.4923 8 7 3.9480 0.7893 -1.4923 9 6 5.1613 1.2133 -1.0866 10 8 5.9372 0.4324 -0.5721 11 6 5.5490 2.6319 -1.2679 12 6 6.8047 3.0639 -0.8469 13 6 7.1549 4.3926 -1.0276 14 6 6.2329 5.2455 -1.6143 15 6 5.0021 4.7469 -2.0097 16 7 4.6972 3.4801 -1.8304 17 7 2.0182 -0.6906 1.1963 18 6 2.1490 -0.0074 2.3758 19 1 1.8919 1.0404 2.4243 20 6 2.6121 -0.6617 3.5091 21 7 2.7373 -0.0051 4.6430 22 14 3.0575 -2.4738 3.4250 23 1 4.4902 -2.6150 3.0612 24 1 2.8183 -3.1043 4.7481 25 1 2.2180 -3.1428 2.3989 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6055 -0.2618 -2.1369 30 1 1.7516 -1.7716 -1.2055 31 1 5.1716 -1.3620 -2.5379 32 1 3.8001 -2.4821 -2.3593 33 1 3.6547 -1.0596 -3.4191 34 1 3.3286 1.4127 -1.9028 35 1 7.4967 2.3725 -0.3893 36 1 8.1228 4.7561 -0.7152 37 1 6.4733 6.2875 -1.7657 38 1 4.2832 5.4075 -2.4712 39 1 2.2489 -1.6317 1.1527 40 1 3.0613 -0.4622 5.4349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133495763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:34 Heat of formation + Delta-G solvation = -19.884796 kcal Electronic energy + Delta-G solvation = -21669.877407 eV Core-core repulsion = 18483.689547 eV Total energy + Delta-G solvation = -3186.187860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.60422 -40.16162 -38.41072 -36.19065 -34.19897 -33.61863 -32.67182 -31.69274 -30.89670 -27.63727 -25.85113 -25.32391 -24.42128 -22.66775 -21.81103 -21.28204 -19.81334 -19.09741 -17.83688 -17.06732 -16.80785 -16.54374 -16.22285 -16.07659 -15.69710 -15.24786 -14.99170 -14.67650 -14.54236 -14.24573 -14.08860 -14.03337 -13.46508 -13.26474 -13.02416 -12.90248 -12.85254 -12.67191 -12.31862 -12.02603 -11.90855 -11.72180 -11.46335 -11.33875 -10.98572 -10.94747 -10.53827 -10.27791 -9.96278 -9.28529 -8.02615 -5.33003 -0.33973 0.26887 1.31949 1.38889 1.43043 1.75525 2.14480 2.47228 2.89982 3.17546 3.30249 3.63539 3.76342 3.88929 3.97694 4.06387 4.06580 4.10764 4.32329 4.48062 4.52900 4.64294 4.74775 4.77015 4.81360 4.88172 4.97354 5.06319 5.06582 5.15405 5.19736 5.30605 5.35730 5.56406 5.58854 5.65933 5.78012 6.22221 6.44801 6.82900 7.09739 7.20847 7.87892 8.04993 9.19778 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.005539 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.867041 B = 5053.957156 C = 5567.237834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.166 3.834 3 H 0.036 0.964 4 C -0.120 4.120 5 C 0.137 3.863 6 H 0.052 0.948 7 C -0.151 4.151 8 N -0.687 5.687 9 C 0.559 3.441 10 O -0.578 6.578 11 C 0.052 3.948 12 C -0.132 4.132 13 C -0.080 4.080 14 C -0.136 4.136 15 C 0.088 3.912 16 N -0.476 5.476 17 N -0.748 5.748 18 C -0.215 4.215 19 H 0.050 0.950 20 C -0.068 4.068 21 N -0.988 5.988 22 Si 0.949 3.051 23 H -0.291 1.291 24 H -0.295 1.295 25 H -0.245 1.245 26 H 0.054 0.946 27 H 0.025 0.975 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.415 0.585 35 H 0.133 0.867 36 H 0.173 0.827 37 H 0.184 0.816 38 H 0.197 0.803 39 H 0.363 0.637 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 8.127 -21.155 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.054 0.946 4 C -0.158 4.158 5 C 0.032 3.968 6 H 0.070 0.930 7 C -0.209 4.209 8 N -0.337 5.337 9 C 0.345 3.655 10 O -0.458 6.458 11 C -0.085 4.085 12 C -0.153 4.153 13 C -0.106 4.106 14 C -0.155 4.155 15 C -0.071 4.071 16 N -0.188 5.188 17 N -0.392 5.392 18 C -0.346 4.346 19 H 0.068 0.932 20 C -0.259 4.259 21 N -0.639 5.639 22 Si 0.777 3.223 23 H -0.218 1.218 24 H -0.221 1.221 25 H -0.169 1.169 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.253 0.747 35 H 0.151 0.849 36 H 0.191 0.809 37 H 0.201 0.799 38 H 0.214 0.786 39 H 0.196 0.804 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.753 7.359 -20.938 22.509 hybrid contribution 1.004 -0.482 1.161 1.608 sum 4.757 6.877 -19.777 21.472 Atomic orbital electron populations 1.22263 0.96991 1.01496 1.00757 1.20495 0.93046 0.95162 0.85443 0.94561 1.22141 0.92410 1.02934 0.98338 1.21063 0.96070 0.80709 0.98926 0.92957 1.22094 1.00446 1.00516 0.97866 1.45757 1.15729 1.11785 1.60411 1.18372 0.82572 0.86968 0.77586 1.90742 1.52983 1.56519 1.45560 1.21004 0.93191 0.93498 1.00798 1.22265 0.96235 0.98541 0.98275 1.22041 1.01703 0.91363 0.95473 1.22870 0.93669 1.02988 0.95987 1.23530 0.96933 0.90612 0.96076 1.67490 1.33578 1.05504 1.12228 1.42800 1.79958 1.09304 1.07106 1.18947 1.34163 0.93976 0.87544 0.93217 1.25441 1.02753 1.02357 0.95344 1.69884 1.55293 1.37569 1.01163 0.85482 0.78149 0.81419 0.77228 1.21782 1.22126 1.16871 0.92724 0.95594 0.90365 0.87321 0.88976 0.94317 0.90108 0.90106 0.74728 0.84893 0.80915 0.79863 0.78622 0.80431 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 9.49 71.98 0.68 -4.39 16 2 C 0.17 6.14 2.84 44.99 0.13 6.27 16 3 H 0.04 1.48 7.56 -2.39 -0.02 1.47 16 4 C -0.12 -3.26 4.29 30.60 0.13 -3.13 16 5 C 0.14 4.35 2.52 44.99 0.11 4.46 16 6 H 0.05 2.19 7.05 -2.39 -0.02 2.17 16 7 C -0.15 -3.80 9.48 71.98 0.68 -3.11 16 8 N -0.69 -22.18 4.44 -445.09 -1.98 -24.15 16 9 C 0.56 21.17 7.78 86.88 0.68 21.84 16 10 O -0.58 -26.38 15.99 -3.76 -0.06 -26.44 16 11 C 0.05 1.64 6.75 41.91 0.28 1.92 16 12 C -0.13 -3.63 9.63 22.61 0.22 -3.41 16 13 C -0.08 -1.43 10.17 22.45 0.23 -1.20 16 14 C -0.14 -1.88 10.11 22.44 0.23 -1.65 16 15 C 0.09 1.57 11.18 84.82 0.95 2.52 16 16 N -0.48 -12.57 9.54 -184.91 -1.76 -14.33 16 17 N -0.75 -35.79 4.30 -322.92 -1.39 -37.18 16 18 C -0.21 -12.83 10.41 84.03 0.87 -11.96 16 19 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 20 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 21 N -0.99 -66.68 13.97 21.65 0.30 -66.37 16 22 Si 0.95 48.72 27.74 68.60 1.90 50.62 16 23 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 24 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 25 H -0.24 -11.07 6.52 99.48 0.65 -10.43 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.42 11.51 7.93 -92.71 -0.74 10.77 16 35 H 0.13 3.90 7.64 -2.91 -0.02 3.88 16 36 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.20 1.93 8.06 -2.91 -0.02 1.90 16 39 H 0.36 16.84 5.66 -92.71 -0.52 16.31 16 40 H 0.25 16.45 8.31 -92.71 -0.77 15.68 16 Total: -1.00 -83.73 338.37 2.40 -81.33 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.28 Total: 32.15 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.66 Total: 4.37 kcal Atomic # 7 Polarization: -137.21 SS G_CDS: -4.82 Total: -142.03 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.06 Total: -26.44 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 1.90 Total: 50.62 kcal Total: -83.73 2.40 -81.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133495763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.446 kcal (2) G-P(sol) polarization free energy of solvation -83.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds