Wall clock time and date at job start Mon Mar 30 2020 02:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47125 * 2 1 4 4 C 1.52998 * 109.47282 * 240.00429 * 2 1 3 5 5 C 1.52998 * 109.47343 * 65.86413 * 4 2 1 6 6 H 1.09004 * 109.46694 * 305.30092 * 5 4 2 7 7 C 1.53000 * 109.47005 * 185.30314 * 5 4 2 8 8 N 1.46498 * 109.47627 * 65.29826 * 5 4 2 9 9 C 1.34769 * 120.00328 * 207.10955 * 8 5 4 10 10 O 1.21511 * 119.99809 * 5.31372 * 9 8 5 11 11 C 1.48168 * 120.00154 * 185.31181 * 9 8 5 12 12 C 1.39308 * 119.72607 * 185.19304 * 11 9 8 13 13 C 1.38594 * 119.06026 * 179.97438 * 12 11 9 14 14 C 1.38621 * 118.48706 * 0.02562 * 13 12 11 15 15 C 1.38560 * 119.35457 * 0.02562 * 14 13 12 16 16 N 1.31523 * 120.90214 * 359.73513 * 15 14 13 17 17 N 1.46499 * 109.47215 * 119.99857 * 2 1 3 18 18 C 1.36932 * 120.00480 * 272.79610 * 17 2 1 19 19 H 1.08004 * 119.99573 * 4.95724 * 18 17 2 20 20 C 1.38809 * 120.00527 * 184.95281 * 18 17 2 21 21 N 1.31613 * 120.00309 * 184.39052 * 20 18 17 22 22 Si 1.86802 * 119.99769 * 4.39394 * 20 18 17 23 23 H 1.48500 * 109.47001 * 93.51433 * 22 20 18 24 24 H 1.48492 * 109.47103 * 213.51860 * 22 20 18 25 25 H 1.48504 * 109.46898 * 333.51698 * 22 20 18 26 26 H 1.09004 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47716 * 299.99555 * 1 2 3 28 28 H 1.09003 * 109.47306 * 60.00254 * 1 2 3 29 29 H 1.09000 * 109.46849 * 305.86230 * 4 2 1 30 30 H 1.09000 * 109.47288 * 185.86512 * 4 2 1 31 31 H 1.09005 * 109.47361 * 59.99957 * 7 5 4 32 32 H 1.09013 * 109.47058 * 179.97438 * 7 5 4 33 33 H 1.08994 * 109.47294 * 299.99443 * 7 5 4 34 34 H 0.97000 * 119.99495 * 27.11071 * 8 5 4 35 35 H 1.08000 * 120.46861 * 359.96187 * 12 11 9 36 36 H 1.07993 * 120.75442 * 179.97438 * 13 12 11 37 37 H 1.08004 * 120.32581 * 180.02562 * 14 13 12 38 38 H 1.08004 * 119.54976 * 179.97438 * 15 14 13 39 39 H 0.97005 * 119.99860 * 92.80188 * 17 2 1 40 40 H 0.96994 * 120.00101 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6539 0.0802 -2.4941 6 1 0.5776 0.2528 -2.4957 7 6 2.0465 -0.7043 -3.7476 8 7 2.3546 1.3667 -2.4836 9 6 1.8180 2.4315 -3.1117 10 8 0.7098 2.3518 -3.6035 11 6 2.5794 3.6994 -3.2024 12 6 1.9787 4.8278 -3.7560 13 6 2.7034 6.0066 -3.8335 14 6 4.0043 6.0157 -3.3550 15 6 4.5386 4.8555 -2.8178 16 7 3.8269 3.7514 -2.7522 17 7 2.0183 -0.6906 1.1962 18 6 2.1920 0.0027 2.3642 19 1 1.8939 1.0390 2.4264 20 6 2.7510 -0.6261 3.4681 21 7 2.8388 0.0130 4.6153 22 14 3.3790 -2.3797 3.3255 23 1 4.8291 -2.3617 3.0060 24 1 3.1643 -3.0885 4.6126 25 1 2.6426 -3.0827 2.2444 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.5934 -1.7140 -1.3033 30 1 3.1249 -0.8130 -1.1983 31 1 1.5250 -1.6615 -3.7555 32 1 1.7711 -0.1335 -4.6346 33 1 3.1227 -0.8768 -3.7461 34 1 3.2049 1.4520 -2.0246 35 1 0.9627 4.7845 -4.1198 36 1 2.2648 6.8976 -4.2579 37 1 4.5958 6.9182 -3.4003 38 1 5.5520 4.8589 -2.4444 39 1 2.2187 -1.6390 1.1608 40 1 3.2298 -0.4264 5.3866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133495766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:38 Heat of formation + Delta-G solvation = 5.735648 kcal Electronic energy + Delta-G solvation = -21252.094859 eV Core-core repulsion = 18067.017985 eV Total energy + Delta-G solvation = -3185.076874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71533 -39.18717 -37.00001 -34.75882 -33.02084 -32.13274 -31.67109 -30.55373 -29.03780 -26.35246 -24.98700 -23.73239 -23.46180 -21.54528 -20.57828 -19.76786 -18.32384 -17.46867 -16.93714 -16.15900 -15.81623 -15.26354 -14.95587 -14.71017 -14.33635 -13.99242 -13.67993 -13.58458 -13.36962 -13.18467 -12.58620 -12.51761 -12.23738 -12.12998 -11.97073 -11.68725 -11.28860 -10.93542 -10.64574 -10.51140 -10.27781 -10.21895 -10.15957 -9.91754 -9.66337 -9.56538 -9.43813 -8.90959 -8.89805 -7.22628 -5.74180 -3.09112 0.47149 0.98305 2.70508 3.13226 3.38385 3.41981 3.47136 3.73691 4.01792 4.55595 4.61270 4.62359 4.74373 4.82539 4.85858 5.17750 5.22521 5.35269 5.48370 5.51873 5.60192 5.68401 5.72145 5.77649 5.84647 5.90034 5.99787 6.16034 6.21943 6.29122 6.33151 6.46414 6.56208 6.65297 6.89479 7.07510 7.42449 7.71654 8.04697 8.23192 8.45386 9.25170 9.97485 10.18348 11.44419 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.004410 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.767741 B = 6347.377980 C = 7181.073443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.177 3.823 3 H 0.057 0.943 4 C -0.137 4.137 5 C 0.139 3.861 6 H 0.096 0.904 7 C -0.161 4.161 8 N -0.697 5.697 9 C 0.571 3.429 10 O -0.539 6.539 11 C 0.082 3.918 12 C -0.114 4.114 13 C -0.083 4.083 14 C -0.154 4.154 15 C 0.099 3.901 16 N -0.456 5.456 17 N -0.750 5.750 18 C -0.239 4.239 19 H 0.088 0.912 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.887 3.113 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.413 0.587 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.164 0.836 39 H 0.361 0.639 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 8.451 -20.219 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.075 0.925 4 C -0.176 4.176 5 C 0.034 3.966 6 H 0.114 0.886 7 C -0.219 4.219 8 N -0.347 5.347 9 C 0.356 3.644 10 O -0.416 6.416 11 C -0.057 4.057 12 C -0.135 4.135 13 C -0.109 4.109 14 C -0.174 4.174 15 C -0.060 4.060 16 N -0.167 5.167 17 N -0.394 5.394 18 C -0.369 4.369 19 H 0.106 0.894 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.718 3.282 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.205 1.205 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.249 0.751 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.181 0.819 39 H 0.195 0.805 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.493 7.752 -20.019 21.519 hybrid contribution 0.548 -0.364 0.019 0.658 sum 2.041 7.387 -20.000 21.418 Atomic orbital electron populations 1.22460 0.98984 1.00761 1.00490 1.20173 0.92062 0.95870 0.85144 0.92542 1.22262 1.01997 0.99406 0.93950 1.21138 0.98457 0.82078 0.94887 0.88567 1.22180 1.01832 1.00239 0.97691 1.45947 1.25607 1.09563 1.53627 1.17853 0.85079 0.82775 0.78711 1.90763 1.18941 1.83565 1.48304 1.21252 0.91445 0.94758 0.98203 1.22148 1.01763 0.92220 0.97379 1.21629 0.94148 0.98093 0.97065 1.22390 0.96323 1.00097 0.98548 1.22850 0.99866 0.87762 0.95545 1.67590 1.05962 1.29221 1.13938 1.42862 1.80429 1.08069 1.07999 1.19072 1.33581 0.96699 0.87590 0.89430 1.24691 1.01234 0.97650 0.95664 1.69710 1.50799 1.37102 1.00700 0.86500 0.79077 0.86033 0.76559 1.21221 1.21890 1.20477 0.93619 0.92629 0.93926 0.90620 0.91101 0.91484 0.92540 0.92400 0.75072 0.83459 0.84138 0.84251 0.81933 0.80545 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.29 37.15 0.35 -2.74 16 2 C 0.18 3.42 2.92 -67.94 -0.20 3.22 16 3 H 0.06 1.17 7.53 -51.93 -0.39 0.78 16 4 C -0.14 -2.08 4.42 -26.73 -0.12 -2.20 16 5 C 0.14 1.91 2.53 -67.93 -0.17 1.74 16 6 H 0.10 1.45 5.67 -51.93 -0.29 1.15 16 7 C -0.16 -1.88 9.50 37.16 0.35 -1.52 16 8 N -0.70 -9.86 4.40 -54.65 -0.24 -10.10 16 9 C 0.57 8.57 7.79 -12.19 -0.09 8.47 16 10 O -0.54 -9.18 15.93 5.36 0.09 -9.10 16 11 C 0.08 1.08 6.75 -83.01 -0.56 0.52 16 12 C -0.11 -1.25 9.63 -39.05 -0.38 -1.62 16 13 C -0.08 -0.68 10.17 -39.31 -0.40 -1.08 16 14 C -0.15 -1.16 10.11 -39.32 -0.40 -1.56 16 15 C 0.10 0.94 11.18 -17.56 -0.20 0.75 16 16 N -0.46 -5.72 9.57 -9.80 -0.09 -5.82 16 17 N -0.75 -17.78 4.88 -53.43 -0.26 -18.04 16 18 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 19 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 20 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 21 N -0.94 -29.60 13.97 55.49 0.78 -28.82 16 22 Si 0.89 22.24 27.98 -169.99 -4.76 17.48 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.28 -6.50 6.19 56.52 0.35 -6.15 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.71 6.49 -51.93 -0.34 0.37 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 5.75 7.99 -40.82 -0.33 5.42 16 35 H 0.15 1.52 7.65 -52.49 -0.40 1.12 16 36 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.36 8.39 5.57 -40.82 -0.23 8.16 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -33.88 335.77 -7.31 -41.20 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.81 Total: 11.13 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.07 Total: -3.00 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.18 Total: -62.77 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.76 Total: 17.48 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.88 -7.31 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133495766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.931 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds