Wall clock time and date at job start Mon Mar 30 2020 02:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47125 * 2 1 4 4 C 1.52998 * 109.47282 * 240.00429 * 2 1 3 5 5 C 1.52998 * 109.47343 * 65.86413 * 4 2 1 6 6 H 1.09004 * 109.46694 * 305.30092 * 5 4 2 7 7 C 1.53000 * 109.47005 * 185.30314 * 5 4 2 8 8 N 1.46498 * 109.47627 * 65.29826 * 5 4 2 9 9 C 1.34769 * 120.00328 * 207.10955 * 8 5 4 10 10 O 1.21511 * 119.99809 * 5.31372 * 9 8 5 11 11 C 1.48168 * 120.00154 * 185.31181 * 9 8 5 12 12 C 1.39308 * 119.72607 * 185.19304 * 11 9 8 13 13 C 1.38594 * 119.06026 * 179.97438 * 12 11 9 14 14 C 1.38621 * 118.48706 * 0.02562 * 13 12 11 15 15 C 1.38560 * 119.35457 * 0.02562 * 14 13 12 16 16 N 1.31523 * 120.90214 * 359.73513 * 15 14 13 17 17 N 1.46499 * 109.47215 * 119.99857 * 2 1 3 18 18 C 1.36932 * 120.00480 * 272.79610 * 17 2 1 19 19 H 1.08004 * 119.99573 * 4.95724 * 18 17 2 20 20 C 1.38809 * 120.00527 * 184.95281 * 18 17 2 21 21 N 1.31613 * 120.00309 * 184.39052 * 20 18 17 22 22 Si 1.86802 * 119.99769 * 4.39394 * 20 18 17 23 23 H 1.48500 * 109.47001 * 93.51433 * 22 20 18 24 24 H 1.48492 * 109.47103 * 213.51860 * 22 20 18 25 25 H 1.48504 * 109.46898 * 333.51698 * 22 20 18 26 26 H 1.09004 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47716 * 299.99555 * 1 2 3 28 28 H 1.09003 * 109.47306 * 60.00254 * 1 2 3 29 29 H 1.09000 * 109.46849 * 305.86230 * 4 2 1 30 30 H 1.09000 * 109.47288 * 185.86512 * 4 2 1 31 31 H 1.09005 * 109.47361 * 59.99957 * 7 5 4 32 32 H 1.09013 * 109.47058 * 179.97438 * 7 5 4 33 33 H 1.08994 * 109.47294 * 299.99443 * 7 5 4 34 34 H 0.97000 * 119.99495 * 27.11071 * 8 5 4 35 35 H 1.08000 * 120.46861 * 359.96187 * 12 11 9 36 36 H 1.07993 * 120.75442 * 179.97438 * 13 12 11 37 37 H 1.08004 * 120.32581 * 180.02562 * 14 13 12 38 38 H 1.08004 * 119.54976 * 179.97438 * 15 14 13 39 39 H 0.97005 * 119.99860 * 92.80188 * 17 2 1 40 40 H 0.96994 * 120.00101 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6539 0.0802 -2.4941 6 1 0.5776 0.2528 -2.4957 7 6 2.0465 -0.7043 -3.7476 8 7 2.3546 1.3667 -2.4836 9 6 1.8180 2.4315 -3.1117 10 8 0.7098 2.3518 -3.6035 11 6 2.5794 3.6994 -3.2024 12 6 1.9787 4.8278 -3.7560 13 6 2.7034 6.0066 -3.8335 14 6 4.0043 6.0157 -3.3550 15 6 4.5386 4.8555 -2.8178 16 7 3.8269 3.7514 -2.7522 17 7 2.0183 -0.6906 1.1962 18 6 2.1920 0.0027 2.3642 19 1 1.8939 1.0390 2.4264 20 6 2.7510 -0.6261 3.4681 21 7 2.8388 0.0130 4.6153 22 14 3.3790 -2.3797 3.3255 23 1 4.8291 -2.3617 3.0060 24 1 3.1643 -3.0885 4.6126 25 1 2.6426 -3.0827 2.2444 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.5934 -1.7140 -1.3033 30 1 3.1249 -0.8130 -1.1983 31 1 1.5250 -1.6615 -3.7555 32 1 1.7711 -0.1335 -4.6346 33 1 3.1227 -0.8768 -3.7461 34 1 3.2049 1.4520 -2.0246 35 1 0.9627 4.7845 -4.1198 36 1 2.2648 6.8976 -4.2579 37 1 4.5958 6.9182 -3.4003 38 1 5.5520 4.8589 -2.4444 39 1 2.2187 -1.6390 1.1608 40 1 3.2298 -0.4264 5.3866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133495766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:37 Heat of formation + Delta-G solvation = -18.249220 kcal Electronic energy + Delta-G solvation = -21253.134921 eV Core-core repulsion = 18067.017985 eV Total energy + Delta-G solvation = -3186.116936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.62641 -40.20144 -38.42363 -36.31697 -34.21726 -33.60399 -32.69145 -31.78125 -30.67914 -27.66468 -25.97310 -25.37799 -24.42850 -22.72685 -21.85954 -21.23559 -19.78507 -19.04406 -17.83371 -17.05138 -16.75942 -16.69627 -16.19760 -16.03171 -15.80703 -15.27829 -14.96202 -14.69390 -14.53507 -14.41388 -14.08166 -13.93112 -13.54321 -13.36931 -13.00616 -12.89584 -12.82473 -12.74607 -12.23413 -12.07751 -11.84780 -11.62790 -11.52946 -11.35347 -10.97810 -10.94740 -10.52540 -10.28871 -9.99520 -9.31090 -8.01169 -5.34718 -0.34319 0.27046 1.38811 1.43997 1.50940 1.71619 2.10713 2.50292 2.89173 3.15919 3.29832 3.43680 3.83114 3.96974 3.98400 4.06937 4.11201 4.12002 4.20648 4.41864 4.52105 4.55464 4.62076 4.77088 4.79525 4.89633 4.91971 5.02444 5.04693 5.09868 5.16558 5.29254 5.35909 5.44730 5.58008 5.65755 5.78660 6.23066 6.40597 6.80986 7.10156 7.12961 7.85755 8.07609 9.20857 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.004410 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.767741 B = 6347.377980 C = 7181.073443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.172 3.828 3 H 0.035 0.965 4 C -0.123 4.123 5 C 0.141 3.859 6 H 0.083 0.917 7 C -0.152 4.152 8 N -0.697 5.697 9 C 0.566 3.434 10 O -0.569 6.569 11 C 0.048 3.952 12 C -0.125 4.125 13 C -0.079 4.079 14 C -0.136 4.136 15 C 0.085 3.915 16 N -0.482 5.482 17 N -0.750 5.750 18 C -0.229 4.229 19 H 0.047 0.953 20 C -0.066 4.066 21 N -0.987 5.987 22 Si 0.962 3.038 23 H -0.279 1.279 24 H -0.298 1.298 25 H -0.247 1.247 26 H 0.059 0.941 27 H 0.025 0.975 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.413 0.587 35 H 0.145 0.855 36 H 0.176 0.824 37 H 0.180 0.820 38 H 0.187 0.813 39 H 0.368 0.632 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 7.956 -22.279 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.064 3.936 3 H 0.054 0.946 4 C -0.162 4.162 5 C 0.037 3.963 6 H 0.101 0.899 7 C -0.211 4.211 8 N -0.347 5.347 9 C 0.352 3.648 10 O -0.449 6.449 11 C -0.089 4.089 12 C -0.146 4.146 13 C -0.105 4.105 14 C -0.156 4.156 15 C -0.075 4.075 16 N -0.195 5.195 17 N -0.394 5.394 18 C -0.360 4.360 19 H 0.065 0.935 20 C -0.257 4.257 21 N -0.637 5.637 22 Si 0.789 3.211 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.172 1.172 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.162 0.838 36 H 0.194 0.806 37 H 0.198 0.802 38 H 0.204 0.796 39 H 0.202 0.798 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.542 7.246 -22.138 23.432 hybrid contribution 0.216 -0.007 0.643 0.679 sum 2.758 7.240 -21.495 22.848 Atomic orbital electron populations 1.22328 0.98144 1.01426 0.99859 1.20342 0.92510 0.95178 0.85574 0.94647 1.22114 1.02263 0.99858 0.91939 1.21118 0.97728 0.82083 0.95369 0.89864 1.22102 1.02634 1.00491 0.95828 1.45994 1.25490 1.09766 1.53408 1.18242 0.84906 0.83567 0.78086 1.90722 1.20202 1.84241 1.49731 1.21091 0.92243 0.94655 1.00908 1.22295 1.02032 0.92835 0.97416 1.22066 0.94215 0.98039 0.96166 1.22846 0.96171 1.00657 0.95919 1.23422 1.00746 0.87761 0.95574 1.67511 1.06000 1.31096 1.14851 1.42808 1.80570 1.08284 1.07764 1.18969 1.32300 0.95320 0.89443 0.93535 1.25557 1.02109 1.02921 0.95080 1.69906 1.52527 1.39556 1.01751 0.85301 0.78708 0.79974 0.77082 1.20541 1.22518 1.17159 0.92218 0.95616 0.92211 0.88579 0.90568 0.89581 0.93294 0.91482 0.75076 0.83758 0.80639 0.80249 0.79609 0.79775 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.80 9.29 71.98 0.67 -5.13 16 2 C 0.17 6.60 2.92 44.99 0.13 6.73 16 3 H 0.04 1.51 7.53 -2.39 -0.02 1.49 16 4 C -0.12 -3.51 4.42 30.59 0.14 -3.37 16 5 C 0.14 3.76 2.53 44.99 0.11 3.87 16 6 H 0.08 2.46 5.67 -2.39 -0.01 2.44 16 7 C -0.15 -3.26 9.50 71.98 0.68 -2.57 16 8 N -0.70 -19.94 4.40 -445.12 -1.96 -21.90 16 9 C 0.57 17.53 7.79 86.88 0.68 18.20 16 10 O -0.57 -20.08 15.93 -3.75 -0.06 -20.13 16 11 C 0.05 1.29 6.75 41.91 0.28 1.58 16 12 C -0.12 -2.69 9.63 22.61 0.22 -2.47 16 13 C -0.08 -1.10 10.17 22.45 0.23 -0.87 16 14 C -0.14 -1.65 10.11 22.44 0.23 -1.42 16 15 C 0.08 1.47 11.18 84.82 0.95 2.42 16 16 N -0.48 -12.10 9.57 -184.91 -1.77 -13.87 16 17 N -0.75 -35.07 4.88 -322.96 -1.58 -36.65 16 18 C -0.23 -13.32 10.41 84.03 0.88 -12.44 16 19 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 20 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 21 N -0.99 -64.23 13.97 21.65 0.30 -63.92 16 22 Si 0.96 45.56 27.98 68.60 1.92 47.48 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.25 -10.31 6.19 99.48 0.62 -9.69 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.98 6.49 -2.39 -0.02 1.96 16 29 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.41 11.72 7.99 -92.71 -0.74 10.98 16 35 H 0.14 3.07 7.65 -2.91 -0.02 3.04 16 36 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 37 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 38 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.37 16.19 5.57 -92.70 -0.52 15.67 16 40 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -76.61 335.77 2.21 -74.40 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: -0.30 Total: 33.51 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 5.66 Total: 1.08 kcal Atomic # 7 Polarization: -131.33 SS G_CDS: -5.00 Total: -136.34 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.06 Total: -20.13 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.92 Total: 47.48 kcal Total: -76.61 2.21 -74.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133495766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.150 kcal (2) G-P(sol) polarization free energy of solvation -76.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds