Wall clock time and date at job start Mon Mar 30 2020 02:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46876 * 2 1 4 4 C 1.53005 * 109.47145 * 119.99724 * 2 1 3 5 5 C 1.52993 * 109.47109 * 185.00203 * 4 2 1 6 6 H 1.08998 * 109.47599 * 305.00195 * 5 4 2 7 7 C 1.53000 * 109.47071 * 184.99868 * 5 4 2 8 8 N 1.46508 * 109.47169 * 65.00243 * 5 4 2 9 9 C 1.34776 * 119.99656 * 205.00065 * 8 5 4 10 10 O 1.21519 * 120.00171 * 359.97438 * 9 8 5 11 11 C 1.48169 * 120.00046 * 179.97438 * 9 8 5 12 12 C 1.39304 * 119.72744 * 179.97438 * 11 9 8 13 13 C 1.38589 * 119.05880 * 179.76686 * 12 11 9 14 14 C 1.38621 * 118.49148 * 0.49798 * 13 12 11 15 15 C 1.38563 * 119.34901 * 359.49980 * 14 13 12 16 16 N 1.31522 * 120.90538 * 0.25414 * 15 14 13 17 17 N 1.46497 * 109.47551 * 240.00005 * 2 1 3 18 18 C 1.36936 * 120.00397 * 84.99625 * 17 2 1 19 19 H 1.08001 * 119.99716 * 0.02562 * 18 17 2 20 20 C 1.38808 * 120.00459 * 180.02562 * 18 17 2 21 21 N 1.31612 * 120.00283 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99799 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47107 * 90.00126 * 22 20 18 24 24 H 1.48494 * 109.47221 * 210.00200 * 22 20 18 25 25 H 1.48504 * 109.47070 * 329.99998 * 22 20 18 26 26 H 1.09003 * 109.47518 * 300.00666 * 1 2 3 27 27 H 1.09000 * 109.47122 * 59.99859 * 1 2 3 28 28 H 1.08996 * 109.47397 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46670 * 65.00147 * 4 2 1 30 30 H 1.09000 * 109.46696 * 304.99864 * 4 2 1 31 31 H 1.09000 * 109.46803 * 60.00360 * 7 5 4 32 32 H 1.09001 * 109.47275 * 179.97438 * 7 5 4 33 33 H 1.08994 * 109.47103 * 299.99835 * 7 5 4 34 34 H 0.96991 * 119.99882 * 24.99545 * 8 5 4 35 35 H 1.07997 * 120.46830 * 359.97438 * 12 11 9 36 36 H 1.08007 * 120.75443 * 180.26738 * 13 12 11 37 37 H 1.08002 * 120.32910 * 179.78334 * 14 13 12 38 38 H 1.07997 * 119.54793 * 180.23453 * 15 14 13 39 39 H 0.97001 * 119.99388 * 265.00481 * 17 2 1 40 40 H 0.97003 * 120.00051 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3138 6 1 3.9954 -0.9921 0.3870 7 6 4.0851 -1.4381 2.4926 8 7 3.9478 0.7896 1.4925 9 6 5.1611 1.2137 1.0868 10 8 5.9373 0.4325 0.5731 11 6 5.5484 2.6324 1.2670 12 6 6.8040 3.0645 0.8460 13 6 7.1501 4.3956 1.0169 14 6 6.2319 5.2463 1.6127 15 6 5.0008 4.7478 2.0074 16 7 4.6962 3.4809 1.8286 17 7 2.0184 -0.6906 -1.1961 18 6 2.1492 -0.0075 -2.3757 19 1 1.8926 1.0404 -2.4242 20 6 2.6115 -0.6620 -3.5092 21 7 2.7376 -0.0054 -4.6428 22 14 3.0545 -2.4748 -3.4256 23 1 1.8567 -3.2924 -3.7451 24 1 4.1298 -2.7674 -4.4071 25 1 3.5293 -2.8058 -2.0579 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.7516 -1.7715 1.2056 30 1 1.6053 -0.2616 2.1370 31 1 3.8001 -2.4818 2.3596 32 1 5.1714 -1.3616 2.5383 33 1 3.6545 -1.0591 3.4194 34 1 3.3283 1.4129 1.9028 35 1 7.4967 2.3728 0.3899 36 1 8.1146 4.7610 0.6966 37 1 6.4720 6.2884 1.7636 38 1 4.2816 5.4086 2.4684 39 1 2.2490 -1.6318 -1.1525 40 1 3.0603 -0.4628 -5.4350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133495768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:40 Heat of formation + Delta-G solvation = -19.894018 kcal Electronic energy + Delta-G solvation = -21671.790423 eV Core-core repulsion = 18485.602163 eV Total energy + Delta-G solvation = -3186.188260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60408 -40.16170 -38.41075 -36.19003 -34.19914 -33.61859 -32.67245 -31.69322 -30.89789 -27.63819 -25.85129 -25.32318 -24.42118 -22.66913 -21.81188 -21.27930 -19.81343 -19.09820 -17.83603 -17.06517 -16.81020 -16.54887 -16.22277 -16.07580 -15.69833 -15.24914 -14.99107 -14.68057 -14.54401 -14.23347 -14.08787 -14.03462 -13.45693 -13.26731 -13.01533 -12.90205 -12.82157 -12.66126 -12.40326 -12.01304 -11.89179 -11.71342 -11.47331 -11.33737 -10.97906 -10.94715 -10.53796 -10.27832 -9.96415 -9.28422 -8.02484 -5.32881 -0.33994 0.26923 1.32984 1.38262 1.43830 1.75444 2.14302 2.47365 2.89999 3.17450 3.30175 3.63813 3.76222 3.88834 3.97734 4.06197 4.06619 4.10781 4.32366 4.47925 4.52837 4.64081 4.74579 4.77041 4.81055 4.88218 4.97371 5.06419 5.06548 5.15377 5.19540 5.30342 5.35692 5.56253 5.59043 5.65925 5.78071 6.22267 6.44724 6.82885 7.09894 7.20701 7.88078 8.05209 9.19911 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.005540 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.373393 B = 5052.934456 C = 5567.008846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.166 3.834 3 H 0.036 0.964 4 C -0.120 4.120 5 C 0.137 3.863 6 H 0.052 0.948 7 C -0.151 4.151 8 N -0.687 5.687 9 C 0.559 3.441 10 O -0.578 6.578 11 C 0.052 3.948 12 C -0.132 4.132 13 C -0.080 4.080 14 C -0.136 4.136 15 C 0.088 3.912 16 N -0.476 5.476 17 N -0.748 5.748 18 C -0.215 4.215 19 H 0.050 0.950 20 C -0.068 4.068 21 N -0.988 5.988 22 Si 0.951 3.049 23 H -0.273 1.273 24 H -0.302 1.302 25 H -0.256 1.256 26 H 0.078 0.922 27 H 0.025 0.975 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.415 0.585 35 H 0.133 0.867 36 H 0.173 0.827 37 H 0.184 0.816 38 H 0.197 0.803 39 H 0.363 0.637 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.162 8.150 21.126 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.054 0.946 4 C -0.158 4.158 5 C 0.032 3.968 6 H 0.070 0.930 7 C -0.209 4.209 8 N -0.337 5.337 9 C 0.345 3.655 10 O -0.458 6.458 11 C -0.085 4.085 12 C -0.153 4.153 13 C -0.106 4.106 14 C -0.155 4.155 15 C -0.071 4.071 16 N -0.188 5.188 17 N -0.392 5.392 18 C -0.347 4.347 19 H 0.068 0.932 20 C -0.259 4.259 21 N -0.639 5.639 22 Si 0.779 3.221 23 H -0.198 1.198 24 H -0.229 1.229 25 H -0.181 1.181 26 H 0.096 0.904 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.253 0.747 35 H 0.151 0.849 36 H 0.191 0.809 37 H 0.201 0.799 38 H 0.214 0.786 39 H 0.196 0.804 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.847 7.385 20.910 22.508 hybrid contribution 0.981 -0.488 -1.157 1.593 sum 4.828 6.897 19.753 21.473 Atomic orbital electron populations 1.22261 0.96927 1.01550 1.00758 1.20493 0.93083 0.95131 0.85430 0.94622 1.22142 0.92396 1.02936 0.98363 1.21059 0.96099 0.80702 0.98897 0.93018 1.22092 1.00445 1.00483 0.97877 1.45759 1.15745 1.11771 1.60415 1.18374 0.82565 0.86973 0.77582 1.90741 1.52955 1.56510 1.45591 1.21003 0.93179 0.93491 1.00820 1.22262 0.96223 0.98518 0.98290 1.22043 1.01709 0.91359 0.95472 1.22870 0.93676 1.03011 0.95957 1.23529 0.96912 0.90610 0.96098 1.67493 1.33619 1.05495 1.12205 1.42799 1.79828 1.09435 1.07106 1.18945 1.34273 0.94023 0.87415 0.93243 1.25443 1.02724 1.02400 0.95337 1.69883 1.55347 1.37547 1.01138 0.85459 0.77661 0.81263 0.77743 1.19847 1.22879 1.18122 0.90368 0.95592 0.92643 0.88981 0.87312 0.90182 0.94319 0.90078 0.74734 0.84868 0.80911 0.79866 0.78628 0.80419 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 9.49 71.98 0.68 -4.38 16 2 C 0.17 6.16 2.84 44.99 0.13 6.28 16 3 H 0.04 1.46 7.56 -2.38 -0.02 1.45 16 4 C -0.12 -3.28 4.29 30.59 0.13 -3.15 16 5 C 0.14 4.38 2.52 44.99 0.11 4.49 16 6 H 0.05 2.19 7.05 -2.39 -0.02 2.17 16 7 C -0.15 -3.82 9.48 71.98 0.68 -3.14 16 8 N -0.69 -22.25 4.44 -445.09 -1.98 -24.22 16 9 C 0.56 21.17 7.78 86.88 0.68 21.85 16 10 O -0.58 -26.34 15.99 -3.78 -0.06 -26.40 16 11 C 0.05 1.64 6.75 41.91 0.28 1.92 16 12 C -0.13 -3.61 9.63 22.61 0.22 -3.39 16 13 C -0.08 -1.43 10.17 22.45 0.23 -1.20 16 14 C -0.14 -1.87 10.11 22.44 0.23 -1.65 16 15 C 0.09 1.57 11.18 84.82 0.95 2.52 16 16 N -0.48 -12.57 9.54 -184.91 -1.76 -14.34 16 17 N -0.75 -35.83 4.30 -322.94 -1.39 -37.22 16 18 C -0.22 -12.86 10.41 84.03 0.87 -11.98 16 19 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 20 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.99 -66.66 13.97 21.65 0.30 -66.36 16 22 Si 0.95 48.73 27.74 68.60 1.90 50.63 16 23 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.30 -15.84 7.11 99.48 0.71 -15.14 16 25 H -0.26 -12.13 6.52 99.48 0.65 -11.48 16 26 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.42 11.54 7.93 -92.71 -0.74 10.81 16 35 H 0.13 3.89 7.64 -2.91 -0.02 3.87 16 36 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 38 H 0.20 1.93 8.06 -2.91 -0.02 1.90 16 39 H 0.36 16.88 5.66 -92.71 -0.52 16.35 16 40 H 0.25 16.44 8.31 -92.71 -0.77 15.67 16 Total: -1.00 -83.56 338.38 2.40 -81.16 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.27 Total: 32.37 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.66 Total: 4.38 kcal Atomic # 7 Polarization: -137.31 SS G_CDS: -4.82 Total: -142.14 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.06 Total: -26.40 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.90 Total: 50.63 kcal Total: -83.56 2.40 -81.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133495768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.264 kcal (2) G-P(sol) polarization free energy of solvation -83.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds