Wall clock time and date at job start Mon Mar 30 2020 02:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48508 * 109.46872 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47141 * 119.99997 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00044 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21517 * 120.00049 * 0.02562 * 18 17 2 20 20 C 1.48169 * 120.00495 * 180.02562 * 18 17 2 21 21 C 1.39301 * 119.73004 * 180.02562 * 20 18 17 22 22 C 1.38589 * 119.06277 * 179.97438 * 21 20 18 23 23 C 1.38621 * 118.48527 * 359.97438 * 22 21 20 24 24 C 1.38558 * 119.35633 * 0.02562 * 23 22 21 25 25 N 1.31524 * 120.89968 * 359.73201 * 24 23 22 26 26 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 27 27 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 28 28 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 30 30 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 31 31 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 32 32 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 33 33 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 34 34 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 35 35 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 36 36 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 37 37 H 1.08003 * 120.46625 * 359.95183 * 21 20 18 38 38 H 1.07999 * 120.75453 * 180.02562 * 22 21 20 39 39 H 1.08007 * 120.32564 * 180.02562 * 23 22 21 40 40 H 1.07997 * 119.55207 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 8.1707 -0.0585 1.1840 15 1 7.5318 -0.7668 3.4139 16 1 8.5570 -2.3469 1.8866 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8576 1.1605 2.4118 20 6 2.6413 -0.7167 3.5669 21 6 2.7716 -0.0164 4.7640 22 6 3.2347 -0.6833 5.8871 23 6 3.5510 -2.0282 5.7739 24 6 3.3969 -2.6616 4.5513 25 7 2.9507 -2.0057 3.5023 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6055 -0.2618 -2.1369 30 1 1.7516 -1.7715 -1.2056 31 1 3.7722 -2.2743 -2.6698 32 1 3.6264 -0.6888 -3.4656 33 1 5.1509 -1.1487 -2.6696 34 1 3.6646 -2.0586 0.2387 35 1 5.6745 -3.1228 2.6790 36 1 2.2489 -1.6319 1.1527 37 1 2.5157 1.0316 4.8160 38 1 3.3459 -0.1671 6.8293 39 1 3.9141 -2.5770 6.6304 40 1 3.6420 -3.7094 4.4597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133495769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:44 Heat of formation + Delta-G solvation = 14.304266 kcal Electronic energy + Delta-G solvation = -22646.303382 eV Core-core repulsion = 19461.598071 eV Total energy + Delta-G solvation = -3184.705311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92694 -38.52651 -36.63698 -34.08581 -32.44272 -31.79796 -31.03426 -30.01593 -28.40556 -26.27454 -24.19277 -23.54133 -22.90668 -21.11209 -20.12822 -19.62565 -17.43507 -17.06937 -16.21525 -15.59065 -15.24825 -14.66207 -14.46447 -14.35956 -13.74282 -13.61882 -13.32532 -13.05947 -12.75877 -12.63622 -12.47715 -12.06059 -11.84327 -11.66727 -11.59352 -11.46595 -10.94228 -10.81066 -10.65974 -10.30898 -10.16787 -9.81616 -9.60703 -9.50714 -9.39318 -8.85567 -8.73043 -8.64612 -8.22293 -6.80678 -5.63981 -2.90591 1.26734 1.81723 3.44142 3.46405 3.51644 3.53021 3.84942 4.57906 4.65815 4.87943 5.15644 5.22212 5.34803 5.44566 5.49779 5.57006 5.62504 5.66818 5.75523 5.91671 5.96884 6.05633 6.08205 6.20968 6.23056 6.31313 6.39710 6.44549 6.50417 6.55894 6.63020 6.68939 6.92823 7.12220 7.13535 7.26866 7.80909 8.23488 8.49498 8.58930 8.98024 9.62598 10.18169 10.53993 11.54151 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.009854 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.524341 B = 2840.737700 C = 4474.889637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.168 3.832 6 H 0.046 0.954 7 C -0.163 4.163 8 N -0.714 5.714 9 C -0.234 4.234 10 H 0.063 0.937 11 C -0.005 4.005 12 N -0.902 5.902 13 Si 0.889 3.111 14 H -0.284 1.284 15 H -0.296 1.296 16 H -0.295 1.295 17 N -0.675 5.675 18 C 0.582 3.418 19 O -0.563 6.563 20 C 0.089 3.911 21 C -0.128 4.128 22 C -0.095 4.095 23 C -0.167 4.167 24 C 0.115 3.885 25 N -0.394 5.394 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.381 0.619 35 H 0.248 0.752 36 H 0.416 0.584 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 0.449 2.255 8.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.064 0.936 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.366 4.366 10 H 0.081 0.919 11 C -0.202 4.202 12 N -0.550 5.550 13 Si 0.721 3.279 14 H -0.210 1.210 15 H -0.224 1.224 16 H -0.222 1.222 17 N -0.326 5.326 18 C 0.367 3.633 19 O -0.443 6.443 20 C -0.050 4.050 21 C -0.149 4.149 22 C -0.121 4.121 23 C -0.187 4.187 24 C -0.045 4.045 25 N -0.104 5.104 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.217 0.783 35 H 0.058 0.942 36 H 0.256 0.744 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.523 0.914 1.469 8.696 hybrid contribution 1.504 -0.019 1.373 2.036 sum -7.018 0.896 2.842 7.625 Atomic orbital electron populations 1.22206 0.96242 1.01682 1.01890 1.20857 0.92543 0.97738 0.84676 0.89926 1.22207 0.97899 1.00632 0.96431 1.20273 0.89661 0.95839 0.88370 0.93630 1.22421 1.01459 1.00324 0.98087 1.42450 1.18669 1.40082 1.34605 1.19113 0.93357 1.13364 1.10729 0.91873 1.24579 0.97663 0.99010 0.98933 1.69703 1.36553 1.23868 1.24865 0.86392 0.85563 0.77414 0.78505 1.20962 1.22390 1.22216 1.45828 1.63840 1.15065 1.07905 1.17763 0.76882 0.85620 0.83034 1.90677 1.52643 1.15507 1.85453 1.21134 0.99019 0.91343 0.93504 1.21994 0.98801 1.01321 0.92743 1.21389 0.97737 0.94591 0.98432 1.22282 1.01099 0.95637 0.99711 1.22648 0.94420 1.00213 0.87233 1.67662 1.06012 1.07221 1.29551 0.92437 0.92110 0.92751 0.90855 0.91699 0.93636 0.94711 0.92952 0.78345 0.94217 0.74441 0.84560 0.85282 0.85393 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.48 37.16 0.35 -1.92 16 2 C 0.15 2.48 2.57 -67.93 -0.17 2.30 16 3 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 4 C -0.13 -2.08 4.43 -26.73 -0.12 -2.20 16 5 C 0.17 3.24 2.89 -67.93 -0.20 3.04 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 8 N -0.71 -16.61 3.84 -53.42 -0.21 -16.81 16 9 C -0.23 -6.25 9.93 -15.06 -0.15 -6.40 16 10 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 11 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 12 N -0.90 -24.14 11.96 55.49 0.66 -23.48 16 13 Si 0.89 22.35 29.55 -169.99 -5.02 17.32 16 14 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 17 N -0.67 -13.08 3.79 -54.64 -0.21 -13.28 16 18 C 0.58 12.38 7.78 -12.18 -0.09 12.28 16 19 O -0.56 -12.82 15.99 5.35 0.09 -12.73 16 20 C 0.09 1.82 6.75 -83.01 -0.56 1.26 16 21 C -0.13 -2.29 9.63 -39.06 -0.38 -2.67 16 22 C -0.10 -1.44 10.17 -39.31 -0.40 -1.84 16 23 C -0.17 -2.49 10.11 -39.32 -0.40 -2.89 16 24 C 0.11 2.00 11.11 -17.57 -0.20 1.81 16 25 N -0.39 -7.94 8.52 -9.80 -0.08 -8.02 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.38 9.17 5.70 -40.82 -0.23 8.94 16 35 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.42 8.41 5.84 -40.82 -0.24 8.17 16 37 H 0.14 2.33 7.64 -52.48 -0.40 1.93 16 38 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.15 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 335.11 15.07 5.05 5.05 Total: -1.00 -29.73 335.11 -7.66 -37.38 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -5.88 Total: 14.54 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.05 Total: 0.04 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 0.17 Total: -61.60 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.73 -7.66 -37.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133495769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.685 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds