Wall clock time and date at job start Mon Mar 30 2020 02:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48508 * 109.46872 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47141 * 119.99997 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00044 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21517 * 120.00049 * 0.02562 * 18 17 2 20 20 C 1.48169 * 120.00495 * 180.02562 * 18 17 2 21 21 C 1.39301 * 119.73004 * 180.02562 * 20 18 17 22 22 C 1.38589 * 119.06277 * 179.97438 * 21 20 18 23 23 C 1.38621 * 118.48527 * 359.97438 * 22 21 20 24 24 C 1.38558 * 119.35633 * 0.02562 * 23 22 21 25 25 N 1.31524 * 120.89968 * 359.73201 * 24 23 22 26 26 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 27 27 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 28 28 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 30 30 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 31 31 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 32 32 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 33 33 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 34 34 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 35 35 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 36 36 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 37 37 H 1.08003 * 120.46625 * 359.95183 * 21 20 18 38 38 H 1.07999 * 120.75453 * 180.02562 * 22 21 20 39 39 H 1.08007 * 120.32564 * 180.02562 * 23 22 21 40 40 H 1.07997 * 119.55207 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 8.1707 -0.0585 1.1840 15 1 7.5318 -0.7668 3.4139 16 1 8.5570 -2.3469 1.8866 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8576 1.1605 2.4118 20 6 2.6413 -0.7167 3.5669 21 6 2.7716 -0.0164 4.7640 22 6 3.2347 -0.6833 5.8871 23 6 3.5510 -2.0282 5.7739 24 6 3.3969 -2.6616 4.5513 25 7 2.9507 -2.0057 3.5023 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6055 -0.2618 -2.1369 30 1 1.7516 -1.7715 -1.2056 31 1 3.7722 -2.2743 -2.6698 32 1 3.6264 -0.6888 -3.4656 33 1 5.1509 -1.1487 -2.6696 34 1 3.6646 -2.0586 0.2387 35 1 5.6745 -3.1228 2.6790 36 1 2.2489 -1.6319 1.1527 37 1 2.5157 1.0316 4.8160 38 1 3.3459 -0.1671 6.8293 39 1 3.9141 -2.5770 6.6304 40 1 3.6420 -3.7094 4.4597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133495769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:43 Heat of formation + Delta-G solvation = -3.941705 kcal Electronic energy + Delta-G solvation = -22647.094587 eV Core-core repulsion = 19461.598071 eV Total energy + Delta-G solvation = -3185.496516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35713 -39.96116 -38.21540 -35.74404 -34.07648 -33.30348 -32.45691 -31.46183 -30.11670 -27.58786 -25.58096 -25.48363 -24.21904 -22.50227 -21.64033 -21.15484 -19.02326 -18.86000 -17.65989 -16.92902 -16.72544 -16.37254 -16.00445 -15.79294 -15.50767 -15.29914 -14.77608 -14.46748 -14.22463 -13.99393 -13.87930 -13.54796 -13.29556 -13.16809 -12.90408 -12.79076 -12.73907 -12.58685 -12.27823 -12.10458 -11.71455 -11.54305 -11.38324 -11.09706 -10.84315 -10.67405 -10.11232 -10.05645 -9.71757 -8.71082 -7.69904 -4.94188 -0.10006 0.53418 1.41001 1.45216 1.49670 1.95685 2.42222 2.62550 3.17280 3.49143 3.57460 3.83704 3.99514 4.09687 4.12363 4.19761 4.25200 4.29513 4.39724 4.58120 4.67483 4.72846 4.84839 4.88538 4.92241 4.94196 5.08134 5.13394 5.17112 5.22859 5.28122 5.37070 5.44180 5.64518 5.67339 5.78677 5.86556 6.46569 6.69691 7.17005 7.43173 7.55605 8.28560 8.55946 9.46524 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.009854 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.524341 B = 2840.737700 C = 4474.889637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 H 0.058 0.942 4 C -0.119 4.119 5 C 0.161 3.839 6 H 0.026 0.974 7 C -0.152 4.152 8 N -0.718 5.718 9 C -0.242 4.242 10 H 0.047 0.953 11 C -0.041 4.041 12 N -0.904 5.904 13 Si 0.930 3.070 14 H -0.288 1.288 15 H -0.304 1.304 16 H -0.295 1.295 17 N -0.671 5.671 18 C 0.570 3.430 19 O -0.592 6.592 20 C 0.053 3.947 21 C -0.140 4.140 22 C -0.090 4.090 23 C -0.150 4.150 24 C 0.093 3.907 25 N -0.419 5.419 26 H 0.039 0.961 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.376 0.624 35 H 0.245 0.755 36 H 0.411 0.589 37 H 0.136 0.864 38 H 0.170 0.830 39 H 0.171 0.829 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.993 -0.149 2.521 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.036 3.964 3 H 0.076 0.924 4 C -0.157 4.157 5 C 0.052 3.948 6 H 0.044 0.956 7 C -0.212 4.212 8 N -0.362 5.362 9 C -0.374 4.374 10 H 0.065 0.935 11 C -0.238 4.238 12 N -0.552 5.552 13 Si 0.763 3.237 14 H -0.214 1.214 15 H -0.232 1.232 16 H -0.222 1.222 17 N -0.321 5.321 18 C 0.356 3.644 19 O -0.475 6.475 20 C -0.085 4.085 21 C -0.161 4.161 22 C -0.115 4.115 23 C -0.170 4.170 24 C -0.067 4.067 25 N -0.130 5.130 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.129 0.871 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.211 0.789 35 H 0.055 0.945 36 H 0.250 0.750 37 H 0.154 0.846 38 H 0.188 0.812 39 H 0.188 0.812 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.168 0.317 1.693 9.328 hybrid contribution 1.711 0.168 1.319 2.167 sum -7.456 0.485 3.011 8.056 Atomic orbital electron populations 1.22101 0.93611 1.02669 1.02469 1.21051 0.94564 0.96326 0.84412 0.92418 1.22124 0.94978 1.01413 0.97193 1.20486 0.92108 0.94315 0.87877 0.95627 1.22259 0.99970 1.00773 0.98172 1.42468 1.17696 1.40251 1.35745 1.19144 0.94664 1.12817 1.10808 0.93473 1.24987 0.99489 0.99731 0.99561 1.69773 1.36707 1.23930 1.24770 0.85745 0.83696 0.76836 0.77394 1.21403 1.23209 1.22235 1.45915 1.63169 1.14731 1.08249 1.18138 0.76740 0.85534 0.84004 1.90632 1.54230 1.16534 1.86055 1.21170 1.01239 0.92036 0.94028 1.22191 0.99197 1.01551 0.93162 1.21862 0.95932 0.94776 0.98942 1.22714 0.98751 0.95650 0.99908 1.23050 0.94744 1.00956 0.87933 1.67558 1.07020 1.07281 1.31144 0.94205 0.89172 0.91490 0.87085 0.90762 0.93392 0.91231 0.95381 0.78879 0.94532 0.74952 0.84609 0.81211 0.81181 0.81744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.48 71.98 0.68 -3.30 16 2 C 0.14 4.70 2.57 44.99 0.12 4.81 16 3 H 0.06 2.22 7.58 -2.39 -0.02 2.20 16 4 C -0.12 -3.49 4.43 30.60 0.14 -3.35 16 5 C 0.16 6.10 2.89 44.99 0.13 6.23 16 6 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 7 C -0.15 -5.13 9.49 71.98 0.68 -4.44 16 8 N -0.72 -33.73 3.84 -322.93 -1.24 -34.97 16 9 C -0.24 -13.15 9.93 84.04 0.83 -12.31 16 10 H 0.05 2.67 7.83 -2.91 -0.02 2.64 16 11 C -0.04 -2.26 5.50 84.86 0.47 -1.80 16 12 N -0.90 -48.54 11.96 21.65 0.26 -48.28 16 13 Si 0.93 46.29 29.55 68.60 2.03 48.32 16 14 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 15 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 16 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 17 N -0.67 -26.51 3.79 -445.09 -1.69 -28.20 16 18 C 0.57 25.09 7.78 86.88 0.68 25.77 16 19 O -0.59 -28.08 15.99 -3.77 -0.06 -28.14 16 20 C 0.05 2.23 6.75 41.91 0.28 2.51 16 21 C -0.14 -5.00 9.63 22.61 0.22 -4.78 16 22 C -0.09 -2.49 10.17 22.45 0.23 -2.26 16 23 C -0.15 -4.07 10.11 22.44 0.23 -3.84 16 24 C 0.09 3.16 11.11 84.82 0.94 4.10 16 25 N -0.42 -17.03 8.52 -184.92 -1.58 -18.60 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 27 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.38 18.28 5.70 -92.71 -0.53 17.75 16 35 H 0.24 12.97 8.31 -92.70 -0.77 12.20 16 36 H 0.41 16.95 5.84 -92.71 -0.54 16.41 16 37 H 0.14 4.72 7.64 -2.91 -0.02 4.70 16 38 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 39 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 40 H 0.17 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -66.25 335.11 3.32 -62.94 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -0.03 Total: 39.62 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.62 Total: 7.33 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -4.24 Total: -130.06 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.06 Total: -28.14 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -66.25 3.32 -62.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133495769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.994 kcal (2) G-P(sol) polarization free energy of solvation -66.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds