Wall clock time and date at job start Mon Mar 30 2020 02:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.47468 * 2 1 4 4 C 1.53002 * 109.47302 * 240.00570 * 2 1 3 5 5 C 1.52999 * 109.47645 * 175.00262 * 4 2 1 6 6 H 1.08996 * 109.46929 * 54.98926 * 5 4 2 7 7 C 1.52997 * 109.47317 * 174.99822 * 5 4 2 8 8 N 1.46506 * 109.46684 * 294.99878 * 5 4 2 9 9 C 1.34775 * 119.99693 * 155.00124 * 8 5 4 10 10 O 1.21512 * 120.00267 * 359.97438 * 9 8 5 11 11 C 1.48156 * 119.99792 * 179.97438 * 9 8 5 12 12 C 1.39822 * 120.92074 * 359.71441 * 11 9 8 13 13 C 1.38151 * 118.99903 * 179.80305 * 12 11 9 14 14 N 1.31808 * 120.89336 * 0.48264 * 13 12 11 15 15 C 1.31809 * 122.05533 * 359.74567 * 14 13 12 16 16 C 1.38149 * 120.89398 * 0.02562 * 15 14 13 17 17 N 1.46494 * 109.47479 * 120.00352 * 2 1 3 18 18 C 1.36943 * 119.99875 * 275.00252 * 17 2 1 19 19 H 1.07996 * 119.99674 * 359.97438 * 18 17 2 20 20 C 1.38814 * 119.99895 * 179.97438 * 18 17 2 21 21 N 1.31625 * 119.99688 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 119.99942 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47423 * 90.00184 * 22 20 18 24 24 H 1.48504 * 109.47146 * 210.00308 * 22 20 18 25 25 H 1.48503 * 109.47452 * 329.99961 * 22 20 18 26 26 H 1.08999 * 109.47208 * 299.99849 * 1 2 3 27 27 H 1.09006 * 109.47242 * 59.99679 * 1 2 3 28 28 H 1.08999 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47430 * 54.99514 * 4 2 1 30 30 H 1.09006 * 109.46455 * 295.00262 * 4 2 1 31 31 H 1.09002 * 109.47153 * 299.99641 * 7 5 4 32 32 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 33 33 H 1.09004 * 109.47261 * 59.99813 * 7 5 4 34 34 H 0.97000 * 120.00117 * 334.99772 * 8 5 4 35 35 H 1.08002 * 120.49932 * 359.97438 * 12 11 9 36 36 H 1.08001 * 119.54893 * 180.23055 * 13 12 11 37 37 H 1.07996 * 119.55829 * 179.97438 * 15 14 13 38 38 H 1.07995 * 120.50547 * 179.97438 * 16 15 14 39 39 H 0.96999 * 120.00118 * 94.99541 * 17 2 1 40 40 H 0.97004 * 119.99117 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5649 -0.6133 -1.3138 6 1 3.9954 -0.9922 -0.3869 7 6 4.0851 -1.4382 -2.4926 8 7 3.9480 0.7895 -1.4924 9 6 5.1612 1.2135 -1.0867 10 8 5.9371 0.4326 -0.5723 11 6 5.5489 2.6320 -1.2679 12 6 4.6735 3.5457 -1.8628 13 6 5.0743 4.8598 -2.0083 14 7 6.2657 5.2526 -1.6040 15 6 7.1228 4.4232 -1.0428 16 6 6.8025 3.0927 -0.8542 17 7 2.0184 -0.6906 1.1960 18 6 2.1492 -0.0075 2.3757 19 1 1.8926 1.0404 2.4241 20 6 2.6114 -0.6621 3.5092 21 7 2.9246 -1.9392 3.4499 22 14 2.7905 0.2698 5.1181 23 1 1.5228 0.1796 5.8862 24 1 3.8948 -0.3240 5.9139 25 1 3.0964 1.6949 4.8334 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -0.2616 -2.1370 30 1 1.7516 -1.7714 -1.2057 31 1 3.8001 -2.4818 -2.3597 32 1 5.1714 -1.3609 -2.5388 33 1 3.6545 -1.0592 -3.4195 34 1 3.3285 1.4130 -1.9028 35 1 3.6977 3.2295 -2.2008 36 1 4.4038 5.5738 -2.4632 37 1 8.0887 4.7885 -0.7268 38 1 7.5096 2.4185 -0.3941 39 1 2.2490 -1.6318 1.1525 40 1 3.2479 -2.3964 4.2420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133534802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:59 Heat of formation + Delta-G solvation = -21.373619 kcal Electronic energy + Delta-G solvation = -21612.480151 eV Core-core repulsion = 18426.227731 eV Total energy + Delta-G solvation = -3186.252420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62333 -40.23407 -38.31945 -36.13477 -34.27546 -33.69952 -32.35605 -31.58638 -30.40798 -27.61114 -25.98880 -25.61498 -24.42798 -22.64782 -21.74601 -21.22615 -19.49539 -19.05564 -17.75180 -16.86575 -16.72005 -16.52759 -16.38087 -16.03153 -15.63366 -15.43114 -14.93091 -14.74157 -14.54356 -14.49930 -14.22676 -13.61913 -13.37191 -13.18985 -12.95024 -12.80096 -12.69806 -12.67231 -12.26637 -12.22183 -11.83986 -11.57941 -11.43383 -11.31644 -10.97598 -10.92248 -10.52567 -10.19294 -10.06354 -8.95489 -7.93424 -5.18432 -0.32587 0.10100 1.41005 1.42989 1.49976 1.85731 2.09141 2.54709 2.86787 3.41152 3.50325 3.53396 3.77862 3.86481 3.96332 4.01130 4.07144 4.12201 4.38779 4.52800 4.53606 4.67572 4.78807 4.79521 4.81280 4.83174 4.93710 5.01646 5.07880 5.11172 5.22345 5.34092 5.40330 5.49348 5.58491 5.62240 5.64861 6.30227 6.50811 6.89085 7.19229 7.35912 8.16763 8.35666 9.30370 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.005760 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.661189 B = 4859.718458 C = 5812.234574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.043 0.957 4 C -0.118 4.118 5 C 0.145 3.855 6 H 0.048 0.952 7 C -0.151 4.151 8 N -0.692 5.692 9 C 0.548 3.452 10 O -0.578 6.578 11 C -0.101 4.101 12 C -0.132 4.132 13 C 0.097 3.903 14 N -0.490 5.490 15 C 0.096 3.904 16 C -0.135 4.135 17 N -0.732 5.732 18 C -0.225 4.225 19 H 0.069 0.931 20 C -0.078 4.078 21 N -0.968 5.968 22 Si 0.959 3.041 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.275 1.275 26 H 0.028 0.972 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.413 0.587 35 H 0.171 0.829 36 H 0.198 0.802 37 H 0.186 0.814 38 H 0.136 0.864 39 H 0.370 0.630 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 11.306 -17.687 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.061 0.939 4 C -0.156 4.156 5 C 0.040 3.960 6 H 0.066 0.934 7 C -0.210 4.210 8 N -0.344 5.344 9 C 0.335 3.665 10 O -0.458 6.458 11 C -0.112 4.112 12 C -0.152 4.152 13 C -0.060 4.060 14 N -0.199 5.199 15 C -0.060 4.060 16 C -0.156 4.156 17 N -0.372 5.372 18 C -0.357 4.357 19 H 0.087 0.913 20 C -0.270 4.270 21 N -0.620 5.620 22 Si 0.790 3.210 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.200 1.200 26 H 0.047 0.953 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.251 0.749 35 H 0.188 0.812 36 H 0.215 0.785 37 H 0.203 0.797 38 H 0.154 0.846 39 H 0.202 0.798 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.115 11.747 -17.334 20.969 hybrid contribution -0.026 -1.065 1.571 1.899 sum 1.089 10.682 -15.763 19.072 Atomic orbital electron populations 1.22305 0.97596 1.00888 1.00795 1.20551 0.92739 0.95277 0.86024 0.93873 1.22095 0.92362 1.02489 0.98651 1.20917 0.95951 0.80520 0.98580 0.93404 1.22088 1.00343 1.00376 0.98148 1.45737 1.15635 1.11862 1.61153 1.18628 0.82462 0.87732 0.77635 1.90774 1.52825 1.57334 1.44873 1.20476 0.96586 0.93299 1.00838 1.22662 1.00790 0.94216 0.97565 1.23371 0.92847 0.94444 0.95337 1.67631 1.04165 1.38867 1.09277 1.23113 0.99923 0.88541 0.94455 1.22423 0.96366 0.98178 0.98594 1.42609 1.78217 1.10118 1.06279 1.19492 1.33984 0.93755 0.88503 0.91294 1.25420 1.03600 0.96845 1.01149 1.69800 1.53086 1.10076 1.29018 0.85335 0.76914 0.77962 0.80816 1.21146 1.22710 1.20013 0.95271 0.90243 0.93961 0.87110 0.90370 0.90979 0.94484 0.89654 0.74902 0.81206 0.78518 0.79699 0.84646 0.79834 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 9.49 71.98 0.68 -4.19 16 2 C 0.16 5.71 2.84 44.99 0.13 5.83 16 3 H 0.04 1.54 7.56 -2.38 -0.02 1.52 16 4 C -0.12 -3.13 4.29 30.59 0.13 -3.00 16 5 C 0.14 4.46 2.52 44.99 0.11 4.58 16 6 H 0.05 2.10 7.05 -2.39 -0.02 2.08 16 7 C -0.15 -3.82 9.48 71.98 0.68 -3.13 16 8 N -0.69 -18.85 4.41 -445.12 -1.96 -20.81 16 9 C 0.55 18.42 7.76 86.88 0.67 19.10 16 10 O -0.58 -25.54 16.11 -3.75 -0.06 -25.60 16 11 C -0.10 -2.69 5.91 -19.88 -0.12 -2.81 16 12 C -0.13 -2.42 9.62 22.63 0.22 -2.20 16 13 C 0.10 1.64 11.17 84.68 0.95 2.59 16 14 N -0.49 -10.51 10.33 -196.01 -2.03 -12.54 16 15 C 0.10 2.05 11.17 84.67 0.95 2.99 16 16 C -0.13 -3.52 9.68 22.63 0.22 -3.30 16 17 N -0.73 -35.93 4.49 -322.94 -1.45 -37.38 16 18 C -0.22 -12.60 9.93 84.03 0.83 -11.77 16 19 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 20 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 21 N -0.97 -61.21 13.06 21.65 0.28 -60.93 16 22 Si 0.96 48.20 29.55 68.60 2.03 50.22 16 23 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 25 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 26 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.41 7.72 6.74 -92.71 -0.63 7.10 16 35 H 0.17 1.87 6.54 -2.91 -0.02 1.85 16 36 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.14 3.75 7.74 -2.91 -0.02 3.73 16 39 H 0.37 19.91 7.80 -92.71 -0.72 19.19 16 40 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -78.53 339.47 2.44 -76.10 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.30 Total: 30.44 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.93 Total: 0.52 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -5.15 Total: -131.67 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.06 Total: -25.60 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.22 kcal Total: -78.53 2.44 -76.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133534802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.722 kcal (2) G-P(sol) polarization free energy of solvation -78.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds