Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47506 * 2 1 4 4 C 1.52997 * 109.47009 * 239.99431 * 2 1 3 5 5 C 1.53009 * 109.47213 * 174.68516 * 4 2 1 6 6 H 1.08998 * 109.46399 * 54.21453 * 5 4 2 7 7 C 1.53002 * 109.46829 * 294.21684 * 5 4 2 8 8 N 1.46499 * 109.46963 * 174.21525 * 5 4 2 9 9 C 1.36936 * 119.99653 * 201.71607 * 8 5 4 10 10 H 1.08000 * 120.00309 * 5.32216 * 9 8 5 11 11 C 1.38815 * 119.99726 * 185.32006 * 9 8 5 12 12 N 1.31624 * 119.99495 * 185.33406 * 11 9 8 13 13 Si 1.86796 * 120.00079 * 5.61150 * 11 9 8 14 14 H 1.48502 * 109.47005 * 265.26945 * 13 11 9 15 15 H 1.48493 * 109.47068 * 25.26849 * 13 11 9 16 16 H 1.48498 * 109.47087 * 145.26905 * 13 11 9 17 17 N 1.46506 * 109.46749 * 120.00326 * 2 1 3 18 18 C 1.34778 * 119.99691 * 277.64726 * 17 2 1 19 19 O 1.21520 * 119.99929 * 4.64726 * 18 17 2 20 20 C 1.48144 * 120.00164 * 184.64283 * 18 17 2 21 21 C 1.39824 * 120.92233 * 5.04881 * 20 18 17 22 22 C 1.38141 * 119.00291 * 179.79666 * 21 20 18 23 23 N 1.31821 * 120.89512 * 0.48726 * 22 21 20 24 24 C 1.31803 * 122.04772 * 359.74251 * 23 22 21 25 25 C 1.38143 * 120.89854 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47091 * 300.00390 * 1 2 3 28 28 H 1.09002 * 109.46801 * 59.99923 * 1 2 3 29 29 H 1.09000 * 109.47060 * 54.68836 * 4 2 1 30 30 H 1.08999 * 109.47800 * 294.68681 * 4 2 1 31 31 H 1.08996 * 109.46982 * 299.99363 * 7 5 4 32 32 H 1.08998 * 109.47046 * 60.00197 * 7 5 4 33 33 H 1.08996 * 109.46600 * 179.97438 * 7 5 4 34 34 H 0.96999 * 119.99897 * 21.71958 * 8 5 4 35 35 H 0.96998 * 119.99456 * 180.27699 * 12 11 9 36 36 H 0.96997 * 120.00546 * 97.65019 * 17 2 1 37 37 H 1.08003 * 120.49833 * 359.97438 * 21 20 18 38 38 H 1.08003 * 119.55362 * 180.22736 * 22 21 20 39 39 H 1.08000 * 119.55242 * 180.02562 * 24 23 22 40 40 H 1.08009 * 120.50371 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 6 3.5642 -0.6067 -1.3178 6 1 3.9980 -0.9690 -0.3858 7 6 3.9565 0.8572 -1.5279 8 7 4.0646 -1.4116 -2.4349 9 6 5.3676 -1.8326 -2.4457 10 1 6.0026 -1.6455 -1.5924 11 6 5.8721 -2.4999 -3.5534 12 7 7.0907 -2.9967 -3.5237 13 14 4.8247 -2.6860 -5.0889 14 1 4.1245 -3.9951 -5.0547 15 1 3.8237 -1.5904 -5.1410 16 1 5.6933 -2.6205 -6.2915 17 7 2.0182 -0.6907 1.1962 18 6 2.0963 -0.0324 2.3697 19 8 1.6833 1.1072 2.4557 20 6 2.6856 -0.6982 3.5547 21 6 3.2612 -1.9684 3.4531 22 6 3.8030 -2.5505 4.5827 23 7 3.7735 -1.9291 5.7448 24 6 3.2367 -0.7335 5.8852 25 6 2.6764 -0.0764 4.8070 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6010 -0.2655 -2.1366 30 1 1.7564 -1.7728 -1.2028 31 1 3.5226 1.2194 -2.4599 32 1 3.5842 1.4560 -0.6967 33 1 5.0423 0.9388 -1.5764 34 1 3.4729 -1.6463 -3.1669 35 1 7.4447 -3.4595 -4.2992 36 1 2.2853 -1.6217 1.1437 37 1 3.2844 -2.4855 2.5052 38 1 4.2531 -3.5298 4.5136 39 1 3.2349 -0.2611 6.8564 40 1 2.2379 0.9030 4.9293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133534805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = 5.497960 kcal Electronic energy + Delta-G solvation = -21257.210054 eV Core-core repulsion = 18072.122873 eV Total energy + Delta-G solvation = -3185.087181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.77192 -39.36086 -37.15434 -34.88038 -33.20435 -32.14812 -31.51764 -30.67245 -29.11955 -26.47518 -25.11569 -23.75395 -23.52302 -21.59510 -20.72430 -19.88451 -18.48727 -17.55297 -16.86722 -15.96199 -15.74644 -15.51832 -15.17067 -14.74820 -14.42097 -14.03259 -13.88689 -13.86528 -13.63905 -13.31345 -12.63560 -12.60993 -12.23697 -12.02356 -11.93937 -11.80103 -11.37348 -11.05392 -10.72727 -10.62277 -10.33622 -10.27006 -10.11594 -10.06635 -9.68947 -9.62703 -9.44445 -9.12614 -8.95989 -7.31907 -5.81747 -3.17423 0.51074 0.85305 2.76023 2.97105 3.33227 3.38056 3.42543 3.65706 4.18662 4.36799 4.53933 4.55338 4.73152 4.74910 4.83870 5.07789 5.20081 5.27901 5.43786 5.48685 5.50904 5.57685 5.59801 5.65439 5.76766 5.79732 5.89854 6.04110 6.12933 6.18391 6.31673 6.35715 6.44414 6.50366 6.77329 6.98135 7.37216 7.66134 7.95309 8.03682 8.37469 9.16347 9.88675 10.08684 11.36548 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.004399 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.861613 B = 6362.933470 C = 7390.600947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.093 0.907 4 C -0.137 4.137 5 C 0.178 3.822 6 H 0.052 0.948 7 C -0.168 4.168 8 N -0.749 5.749 9 C -0.243 4.243 10 H 0.089 0.911 11 C 0.006 3.994 12 N -0.933 5.933 13 Si 0.881 3.119 14 H -0.286 1.286 15 H -0.275 1.275 16 H -0.291 1.291 17 N -0.710 5.710 18 C 0.559 3.441 19 O -0.533 6.533 20 C -0.086 4.086 21 C -0.138 4.138 22 C 0.098 3.902 23 N -0.472 5.472 24 C 0.093 3.907 25 C -0.118 4.118 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.403 0.597 37 H 0.143 0.857 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.956 3.629 14.056 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.111 0.889 4 C -0.176 4.176 5 C 0.068 3.932 6 H 0.070 0.930 7 C -0.228 4.228 8 N -0.391 5.391 9 C -0.373 4.373 10 H 0.107 0.893 11 C -0.190 4.190 12 N -0.580 5.580 13 Si 0.711 3.289 14 H -0.212 1.212 15 H -0.201 1.201 16 H -0.218 1.218 17 N -0.362 5.362 18 C 0.345 3.655 19 O -0.410 6.410 20 C -0.097 4.097 21 C -0.159 4.159 22 C -0.059 4.059 23 N -0.181 5.181 24 C -0.064 4.064 25 C -0.139 4.139 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.192 0.808 35 H 0.069 0.931 36 H 0.239 0.761 37 H 0.161 0.839 38 H 0.181 0.819 39 H 0.179 0.821 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.633 4.003 14.847 19.901 hybrid contribution -0.748 -0.253 -2.087 2.232 sum -13.382 3.750 12.760 18.867 Atomic orbital electron populations 1.22176 0.95303 1.02095 1.02519 1.21102 0.93723 0.97802 0.83353 0.88891 1.22231 0.97967 1.00909 0.96475 1.20175 0.90191 0.90621 0.92165 0.93021 1.22462 1.02212 0.98339 0.99771 1.42781 1.10677 1.62713 1.22972 1.19039 0.86668 1.29690 1.01911 0.89347 1.24695 0.96082 1.00417 0.97842 1.69714 1.15802 1.42130 1.30374 0.86563 0.79996 0.77755 0.84544 1.21228 1.20096 1.21778 1.46044 1.65863 1.15605 1.08651 1.18157 0.78642 0.85867 0.82875 1.90764 1.47972 1.17852 1.84454 1.20444 0.99476 0.95082 0.94696 1.22461 0.97566 0.94747 1.01107 1.22816 0.95800 0.99926 0.87365 1.67572 1.14341 1.09454 1.26776 1.22803 0.93839 0.90805 0.98954 1.22314 0.98225 1.01368 0.91978 0.92506 0.92093 0.91505 0.90363 0.91035 0.93533 0.94142 0.92419 0.80762 0.93060 0.76133 0.83928 0.81898 0.82101 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.43 37.16 0.35 -1.39 16 2 C 0.14 1.77 2.39 -67.93 -0.16 1.61 16 3 H 0.09 1.28 5.95 -51.93 -0.31 0.97 16 4 C -0.14 -1.86 4.37 -26.73 -0.12 -1.97 16 5 C 0.18 3.15 2.91 -67.93 -0.20 2.95 16 6 H 0.05 0.94 7.56 -51.93 -0.39 0.55 16 7 C -0.17 -2.93 9.23 37.16 0.34 -2.59 16 8 N -0.75 -16.71 4.93 -53.42 -0.26 -16.98 16 9 C -0.24 -6.61 10.38 -15.06 -0.16 -6.77 16 10 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 11 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 12 N -0.93 -28.74 13.97 55.49 0.78 -27.97 16 13 Si 0.88 21.50 27.69 -169.99 -4.71 16.80 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.33 6.62 56.52 0.37 -5.96 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 N -0.71 -8.33 4.43 -54.66 -0.24 -8.57 16 18 C 0.56 7.31 7.71 -12.19 -0.09 7.22 16 19 O -0.53 -8.47 15.89 5.35 0.08 -8.38 16 20 C -0.09 -0.98 5.91 -104.65 -0.62 -1.60 16 21 C -0.14 -1.38 9.60 -39.02 -0.37 -1.75 16 22 C 0.10 0.97 11.17 -17.59 -0.20 0.77 16 23 N -0.47 -5.21 10.33 -13.31 -0.14 -5.35 16 24 C 0.09 0.89 11.17 -17.60 -0.20 0.69 16 25 C -0.12 -1.23 9.68 -39.03 -0.38 -1.61 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.71 7.83 -51.92 -0.41 0.31 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.62 6.48 -51.93 -0.34 0.29 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.36 7.89 5.77 -40.82 -0.24 7.65 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.40 4.10 6.77 -40.82 -0.28 3.83 16 37 H 0.14 1.18 6.60 -52.48 -0.35 0.83 16 38 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.15 1.41 7.75 -52.48 -0.41 1.00 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -33.24 333.58 -7.03 -40.27 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.68 Total: 9.53 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.89 Total: -4.38 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.13 Total: -58.86 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.24 -7.03 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133534805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.772 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds