Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47506 * 2 1 4 4 C 1.52997 * 109.47009 * 239.99431 * 2 1 3 5 5 C 1.53009 * 109.47213 * 174.68516 * 4 2 1 6 6 H 1.08998 * 109.46399 * 54.21453 * 5 4 2 7 7 C 1.53002 * 109.46829 * 294.21684 * 5 4 2 8 8 N 1.46499 * 109.46963 * 174.21525 * 5 4 2 9 9 C 1.36936 * 119.99653 * 201.71607 * 8 5 4 10 10 H 1.08000 * 120.00309 * 5.32216 * 9 8 5 11 11 C 1.38815 * 119.99726 * 185.32006 * 9 8 5 12 12 N 1.31624 * 119.99495 * 185.33406 * 11 9 8 13 13 Si 1.86796 * 120.00079 * 5.61150 * 11 9 8 14 14 H 1.48502 * 109.47005 * 265.26945 * 13 11 9 15 15 H 1.48493 * 109.47068 * 25.26849 * 13 11 9 16 16 H 1.48498 * 109.47087 * 145.26905 * 13 11 9 17 17 N 1.46506 * 109.46749 * 120.00326 * 2 1 3 18 18 C 1.34778 * 119.99691 * 277.64726 * 17 2 1 19 19 O 1.21520 * 119.99929 * 4.64726 * 18 17 2 20 20 C 1.48144 * 120.00164 * 184.64283 * 18 17 2 21 21 C 1.39824 * 120.92233 * 5.04881 * 20 18 17 22 22 C 1.38141 * 119.00291 * 179.79666 * 21 20 18 23 23 N 1.31821 * 120.89512 * 0.48726 * 22 21 20 24 24 C 1.31803 * 122.04772 * 359.74251 * 23 22 21 25 25 C 1.38143 * 120.89854 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47091 * 300.00390 * 1 2 3 28 28 H 1.09002 * 109.46801 * 59.99923 * 1 2 3 29 29 H 1.09000 * 109.47060 * 54.68836 * 4 2 1 30 30 H 1.08999 * 109.47800 * 294.68681 * 4 2 1 31 31 H 1.08996 * 109.46982 * 299.99363 * 7 5 4 32 32 H 1.08998 * 109.47046 * 60.00197 * 7 5 4 33 33 H 1.08996 * 109.46600 * 179.97438 * 7 5 4 34 34 H 0.96999 * 119.99897 * 21.71958 * 8 5 4 35 35 H 0.96998 * 119.99456 * 180.27699 * 12 11 9 36 36 H 0.96997 * 120.00546 * 97.65019 * 17 2 1 37 37 H 1.08003 * 120.49833 * 359.97438 * 21 20 18 38 38 H 1.08003 * 119.55362 * 180.22736 * 22 21 20 39 39 H 1.08000 * 119.55242 * 180.02562 * 24 23 22 40 40 H 1.08009 * 120.50371 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 6 3.5642 -0.6067 -1.3178 6 1 3.9980 -0.9690 -0.3858 7 6 3.9565 0.8572 -1.5279 8 7 4.0646 -1.4116 -2.4349 9 6 5.3676 -1.8326 -2.4457 10 1 6.0026 -1.6455 -1.5924 11 6 5.8721 -2.4999 -3.5534 12 7 7.0907 -2.9967 -3.5237 13 14 4.8247 -2.6860 -5.0889 14 1 4.1245 -3.9951 -5.0547 15 1 3.8237 -1.5904 -5.1410 16 1 5.6933 -2.6205 -6.2915 17 7 2.0182 -0.6907 1.1962 18 6 2.0963 -0.0324 2.3697 19 8 1.6833 1.1072 2.4557 20 6 2.6856 -0.6982 3.5547 21 6 3.2612 -1.9684 3.4531 22 6 3.8030 -2.5505 4.5827 23 7 3.7735 -1.9291 5.7448 24 6 3.2367 -0.7335 5.8852 25 6 2.6764 -0.0764 4.8070 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6010 -0.2655 -2.1366 30 1 1.7564 -1.7728 -1.2028 31 1 3.5226 1.2194 -2.4599 32 1 3.5842 1.4560 -0.6967 33 1 5.0423 0.9388 -1.5764 34 1 3.4729 -1.6463 -3.1669 35 1 7.4447 -3.4595 -4.2992 36 1 2.2853 -1.6217 1.1437 37 1 3.2844 -2.4855 2.5052 38 1 4.2531 -3.5298 4.5136 39 1 3.2349 -0.2611 6.8564 40 1 2.2379 0.9030 4.9293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133534805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = -17.505513 kcal Electronic energy + Delta-G solvation = -21258.207559 eV Core-core repulsion = 18072.122873 eV Total energy + Delta-G solvation = -3186.084687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66310 -40.29742 -38.46194 -36.32703 -34.32811 -33.74423 -32.41521 -31.82441 -30.66662 -27.68163 -26.07068 -25.40899 -24.43567 -22.71630 -21.85510 -21.25377 -19.79658 -19.12900 -17.79711 -16.80437 -16.77352 -16.59117 -16.26065 -16.22230 -15.91029 -15.30646 -14.89629 -14.78095 -14.69570 -14.53822 -14.36306 -13.92836 -13.47030 -13.36722 -12.99526 -12.88644 -12.73109 -12.68255 -12.20737 -12.16501 -11.82412 -11.63443 -11.51848 -11.35458 -10.98771 -10.94691 -10.52914 -10.20238 -10.13537 -9.30197 -8.00044 -5.33022 -0.34530 0.09282 1.40435 1.44233 1.52038 1.80350 2.02917 2.51433 2.84511 3.32255 3.39523 3.49749 3.53061 3.81466 3.94931 3.96354 4.06725 4.11962 4.18895 4.42870 4.53204 4.55752 4.62580 4.76589 4.79970 4.82362 4.90401 4.93411 5.01564 5.03783 5.09594 5.31220 5.37125 5.42142 5.56694 5.61310 5.81061 6.24246 6.41685 6.89279 7.05819 7.11851 7.87609 8.07441 9.21695 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.004399 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.861613 B = 6362.933470 C = 7390.600947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.148 3.852 3 H 0.078 0.922 4 C -0.123 4.123 5 C 0.171 3.829 6 H 0.043 0.957 7 C -0.161 4.161 8 N -0.749 5.749 9 C -0.225 4.225 10 H 0.053 0.947 11 C -0.064 4.064 12 N -0.985 5.985 13 Si 0.953 3.047 14 H -0.277 1.277 15 H -0.249 1.249 16 H -0.303 1.303 17 N -0.704 5.704 18 C 0.558 3.442 19 O -0.566 6.566 20 C -0.103 4.103 21 C -0.138 4.138 22 C 0.092 3.908 23 N -0.491 5.491 24 C 0.094 3.906 25 C -0.124 4.124 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.025 0.975 34 H 0.366 0.634 35 H 0.256 0.744 36 H 0.411 0.589 37 H 0.157 0.843 38 H 0.185 0.815 39 H 0.190 0.810 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.230 3.527 13.847 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.096 0.904 4 C -0.161 4.161 5 C 0.064 3.936 6 H 0.061 0.939 7 C -0.221 4.221 8 N -0.392 5.392 9 C -0.356 4.356 10 H 0.071 0.929 11 C -0.256 4.256 12 N -0.636 5.636 13 Si 0.780 3.220 14 H -0.203 1.203 15 H -0.173 1.173 16 H -0.230 1.230 17 N -0.356 5.356 18 C 0.345 3.655 19 O -0.446 6.446 20 C -0.114 4.114 21 C -0.158 4.158 22 C -0.065 4.065 23 N -0.201 5.201 24 C -0.063 4.063 25 C -0.145 4.145 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.200 0.800 35 H 0.065 0.935 36 H 0.248 0.752 37 H 0.175 0.825 38 H 0.202 0.798 39 H 0.207 0.793 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.957 3.911 14.660 21.305 hybrid contribution 0.003 -0.183 -1.891 1.900 sum -14.954 3.728 12.769 20.014 Atomic orbital electron populations 1.22102 0.93587 1.02972 1.02667 1.21034 0.94946 0.96789 0.82850 0.90358 1.22085 0.94257 1.02103 0.97676 1.20387 0.93190 0.89848 0.90184 0.93870 1.22357 1.00158 0.98505 1.01043 1.42762 1.08883 1.63188 1.24406 1.18969 0.88205 1.28092 1.00376 0.92927 1.25508 0.97526 1.01040 1.01480 1.69902 1.18312 1.44124 1.31276 0.85418 0.78468 0.78759 0.79355 1.20269 1.17302 1.22990 1.46026 1.65343 1.15932 1.08289 1.18399 0.78133 0.85490 0.83481 1.90741 1.49590 1.19250 1.85034 1.20468 1.00496 0.95893 0.94510 1.22610 0.97105 0.94250 1.01877 1.23218 0.95479 1.00739 0.87033 1.67633 1.14918 1.10132 1.27369 1.23240 0.92780 0.90354 0.99884 1.22460 0.98383 1.01653 0.91991 0.91244 0.93287 0.90041 0.88907 0.89805 0.92746 0.92196 0.95530 0.80048 0.93502 0.75184 0.82529 0.79783 0.79331 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.43 71.98 0.68 -2.21 16 2 C 0.15 3.30 2.39 44.99 0.11 3.41 16 3 H 0.08 2.02 5.95 -2.39 -0.01 2.00 16 4 C -0.12 -2.95 4.37 30.60 0.13 -2.81 16 5 C 0.17 5.81 2.91 45.00 0.13 5.94 16 6 H 0.04 1.54 7.56 -2.39 -0.02 1.53 16 7 C -0.16 -5.44 9.23 71.98 0.66 -4.78 16 8 N -0.75 -32.24 4.93 -322.92 -1.59 -33.83 16 9 C -0.23 -12.31 10.38 84.03 0.87 -11.43 16 10 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 11 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 12 N -0.99 -62.15 13.97 21.65 0.30 -61.84 16 13 Si 0.95 43.85 27.69 68.60 1.90 45.75 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.25 -10.24 6.62 99.48 0.66 -9.58 16 16 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 17 N -0.70 -15.47 4.43 -445.12 -1.97 -17.44 16 18 C 0.56 14.21 7.71 86.87 0.67 14.88 16 19 O -0.57 -17.82 15.89 -3.78 -0.06 -17.88 16 20 C -0.10 -2.27 5.91 -19.88 -0.12 -2.39 16 21 C -0.14 -2.60 9.60 22.63 0.22 -2.39 16 22 C 0.09 1.70 11.17 84.67 0.95 2.64 16 23 N -0.49 -10.21 10.33 -196.02 -2.03 -12.24 16 24 C 0.09 1.68 11.17 84.67 0.95 2.63 16 25 C -0.12 -2.50 9.68 22.63 0.22 -2.28 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.05 7.83 -2.38 -0.02 1.04 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.78 6.48 -2.39 -0.02 1.77 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.37 14.92 5.77 -92.71 -0.53 14.38 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.41 7.64 6.77 -92.71 -0.63 7.01 16 37 H 0.16 2.37 6.60 -2.91 -0.02 2.35 16 38 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.19 2.12 8.06 -2.91 -0.02 2.09 16 40 H 0.15 2.83 7.75 -2.91 -0.02 2.81 16 Total: -1.00 -72.48 333.58 2.33 -70.14 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.16 Total: 29.35 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.93 Total: -2.00 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -5.28 Total: -125.35 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.06 Total: -17.88 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.90 Total: 45.75 kcal Total: -72.48 2.33 -70.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133534805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.637 kcal (2) G-P(sol) polarization free energy of solvation -72.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds