Wall clock time and date at job start Mon Mar 30 2020 02:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.50700 * 109.47526 * 294.99769 * 4 2 1 6 6 O 1.21274 * 119.99793 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99911 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99721 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47189 * 180.02562 * 8 7 5 10 10 N 1.46495 * 109.47305 * 180.02562 * 9 8 7 11 11 C 1.36938 * 120.00063 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99894 * 0.02562 * 11 10 9 13 13 C 1.38812 * 119.99780 * 179.97438 * 11 10 9 14 14 N 1.31622 * 120.00427 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99853 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46928 * 60.00464 * 15 13 11 17 17 H 1.48496 * 109.47143 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46941 * 300.00645 * 15 13 11 19 19 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 20 20 C 1.38671 * 120.41452 * 119.99991 * 19 2 1 21 21 C 1.38626 * 118.42012 * 180.02562 * 20 19 2 22 22 C 1.38234 * 119.16099 * 0.02562 * 21 20 19 23 23 N 1.31844 * 120.76134 * 359.97438 * 22 21 20 24 24 C 1.31887 * 121.72803 * 359.70631 * 23 22 21 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 29 29 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 30 30 H 0.97000 * 120.00167 * 0.02562 * 7 5 4 31 31 H 1.09005 * 109.47144 * 299.99936 * 8 7 5 32 32 H 1.08997 * 109.47122 * 60.00313 * 8 7 5 33 33 H 1.09005 * 109.46847 * 299.99900 * 9 8 7 34 34 H 1.08997 * 109.46991 * 59.99471 * 9 8 7 35 35 H 0.97000 * 119.99996 * 359.97438 * 10 9 8 36 36 H 0.96999 * 120.00012 * 179.97438 * 14 13 11 37 37 H 1.08006 * 120.79168 * 359.97438 * 20 19 2 38 38 H 1.08003 * 120.42446 * 180.02562 * 21 20 19 39 39 H 1.07996 * 119.61777 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.62010 * 180.30975 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0110 1.0870 2.3633 7 7 1.9852 -0.3914 3.7001 8 6 1.5972 0.3650 4.8933 9 6 2.1083 -0.3555 6.1425 10 7 1.7198 0.4005 7.3357 11 6 2.0691 -0.0552 8.5789 12 1 2.6314 -0.9717 8.6797 13 6 1.7014 0.6615 9.7093 14 7 1.0165 1.7787 9.5865 15 14 2.1773 0.0395 11.4053 16 1 3.6564 -0.0499 11.5026 17 1 1.6687 0.9781 12.4375 18 1 1.5848 -1.3046 11.6239 19 6 2.0324 -0.7105 -1.2304 20 6 2.8302 -0.0449 -2.1489 21 6 3.2688 -0.7382 -3.2663 22 6 2.8986 -2.0603 -3.4271 23 7 2.1385 -2.6612 -2.5329 24 6 1.7082 -2.0348 -1.4550 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 2.4897 -1.2149 3.7907 31 1 2.0312 1.3639 4.8474 32 1 0.5109 0.4424 4.9370 33 1 1.6747 -1.3546 6.1887 34 1 3.1947 -0.4327 6.0985 35 1 1.2150 1.2238 7.2451 36 1 0.7593 2.2793 10.3765 37 1 3.1026 0.9892 -1.9976 38 1 3.8919 -0.2515 -4.0021 39 1 3.2358 -2.6072 -4.2951 40 1 1.0912 -2.5616 -0.7420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134730741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:49 Heat of formation + Delta-G solvation = -27.624026 kcal Electronic energy + Delta-G solvation = -20179.977069 eV Core-core repulsion = 16993.453611 eV Total energy + Delta-G solvation = -3186.523458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41345 -40.59851 -37.47296 -36.40032 -35.42938 -33.22404 -33.07902 -31.18506 -29.92121 -28.23184 -25.65123 -24.95291 -24.39534 -23.10659 -22.00136 -20.88101 -19.31488 -18.35866 -17.79679 -17.32931 -16.79496 -16.73839 -16.48971 -15.89972 -15.59800 -15.28544 -15.08084 -14.98155 -14.73738 -14.39975 -14.04774 -13.91492 -13.74232 -13.24208 -13.03958 -12.87874 -12.61168 -12.52406 -12.24437 -12.22120 -12.11824 -11.86694 -11.80822 -10.98026 -10.82100 -10.69665 -10.32851 -10.07783 -9.85805 -9.06998 -7.97133 -5.28656 0.20031 0.38366 1.48259 1.51978 1.58118 1.67804 2.14899 2.58188 2.90348 3.36806 3.49664 3.67406 3.79302 3.98921 4.03026 4.08365 4.12386 4.13580 4.22663 4.24800 4.33842 4.48434 4.60052 4.68096 4.69361 4.80579 4.91750 4.99357 5.07956 5.14122 5.15022 5.26464 5.34676 5.42225 5.48221 5.54627 5.82401 6.23610 6.59466 7.07328 7.29580 7.30289 8.02013 8.24682 9.26262 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048202 B = 0.002378 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.754503 B =11770.279757 C =12016.840743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.024 4.024 3 H 0.078 0.922 4 C -0.124 4.124 5 C 0.509 3.491 6 O -0.579 6.579 7 N -0.714 5.714 8 C 0.128 3.872 9 C 0.148 3.852 10 N -0.748 5.748 11 C -0.249 4.249 12 H 0.083 0.917 13 C -0.078 4.078 14 N -0.971 5.971 15 Si 0.980 3.020 16 H -0.275 1.275 17 H -0.297 1.297 18 H -0.275 1.275 19 C -0.127 4.127 20 C -0.081 4.081 21 C -0.167 4.167 22 C 0.079 3.921 23 N -0.512 5.512 24 C 0.092 3.908 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.417 0.583 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.374 0.626 36 H 0.252 0.748 37 H 0.148 0.852 38 H 0.161 0.839 39 H 0.175 0.825 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.414 -8.226 -27.277 29.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.044 4.044 3 H 0.096 0.904 4 C -0.164 4.164 5 C 0.297 3.703 6 O -0.459 6.459 7 N -0.367 5.367 8 C 0.003 3.997 9 C 0.021 3.979 10 N -0.391 5.391 11 C -0.381 4.381 12 H 0.101 0.899 13 C -0.270 4.270 14 N -0.621 5.621 15 Si 0.808 3.192 16 H -0.201 1.201 17 H -0.223 1.223 18 H -0.201 1.201 19 C -0.129 4.129 20 C -0.107 4.107 21 C -0.186 4.186 22 C -0.078 4.078 23 N -0.221 5.221 24 C -0.064 4.064 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.254 0.746 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.205 0.795 36 H 0.061 0.939 37 H 0.165 0.835 38 H 0.178 0.822 39 H 0.192 0.808 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.819 -8.510 -27.371 29.065 hybrid contribution 0.234 0.960 1.334 1.660 sum 5.053 -7.550 -26.036 27.576 Atomic orbital electron populations 1.21927 0.94070 1.02309 1.02208 1.19705 0.96303 0.98756 0.89641 0.90384 1.21781 1.04482 1.00466 0.89668 1.21265 0.78356 0.85428 0.85273 1.90679 1.41550 1.26587 1.87113 1.45814 1.57693 1.28210 1.05005 1.21105 0.99222 0.95127 0.84232 1.20858 0.97645 0.94534 0.84816 1.42435 1.67023 1.28032 1.01643 1.19615 1.28304 1.05710 0.84462 0.89934 1.25690 1.01470 0.97799 1.02056 1.69831 1.44816 1.18023 1.29424 0.85121 0.78014 0.77186 0.78863 1.20091 1.22311 1.20103 1.20834 0.99005 0.95632 0.97463 1.21864 0.94534 1.01102 0.93191 1.22451 1.01360 0.95840 0.98984 1.23217 0.93564 0.93149 0.97823 1.67712 1.11187 1.39838 1.03371 1.22823 0.97185 0.91782 0.94617 0.92731 0.91692 0.92471 0.86201 0.86638 0.74636 0.93054 0.92996 0.94528 0.94564 0.79479 0.93891 0.83460 0.82167 0.80838 0.81954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.75 71.98 0.63 -2.17 16 2 C -0.02 -0.41 2.23 -11.54 -0.03 -0.43 16 3 H 0.08 1.49 7.74 -2.39 -0.02 1.47 16 4 C -0.12 -1.88 4.92 29.85 0.15 -1.73 16 5 C 0.51 12.46 7.55 87.66 0.66 13.12 16 6 O -0.58 -19.34 13.96 -3.01 -0.04 -19.38 16 7 N -0.71 -17.27 5.56 -463.06 -2.57 -19.84 16 8 C 0.13 4.28 5.79 86.38 0.50 4.78 16 9 C 0.15 5.58 6.37 86.38 0.55 6.13 16 10 N -0.75 -38.00 5.60 -343.46 -1.92 -39.92 16 11 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 12 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 13 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 14 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 15 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 17 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 C -0.13 -1.91 4.79 -19.78 -0.09 -2.00 16 20 C -0.08 -1.05 9.81 22.47 0.22 -0.83 16 21 C -0.17 -1.84 10.11 22.36 0.23 -1.62 16 22 C 0.08 1.07 11.18 84.69 0.95 2.01 16 23 N -0.51 -9.31 10.36 -195.84 -2.03 -11.34 16 24 C 0.09 1.48 9.95 84.67 0.84 2.32 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.03 7.43 -2.39 -0.02 1.01 16 27 H 0.06 1.42 5.95 -2.39 -0.01 1.41 16 28 H 0.12 1.28 7.58 -2.39 -0.02 1.26 16 29 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.42 7.21 8.47 -92.71 -0.79 6.42 16 31 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.04 1.31 8.14 -2.38 -0.02 1.30 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.37 20.54 7.67 -92.71 -0.71 19.83 16 36 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.15 1.46 8.00 -2.91 -0.02 1.44 16 38 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 39 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 40 H 0.16 2.09 7.19 -2.91 -0.02 2.07 16 Total: -1.00 -73.03 337.50 1.21 -71.82 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.45 Total: 27.96 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.91 Total: 2.65 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -6.24 Total: -130.71 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.04 Total: -19.38 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.03 1.21 -71.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134730741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.201 kcal (2) G-P(sol) polarization free energy of solvation -73.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds