Wall clock time and date at job start Mon Mar 30 2020 02:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99408 * 2 1 4 4 H 1.09001 * 109.52417 * 30.12180 * 3 2 1 5 5 C 1.53124 * 109.51950 * 270.00027 * 3 2 1 6 6 C 1.53037 * 109.27501 * 182.44715 * 5 3 2 7 7 N 1.46848 * 109.53005 * 59.17444 * 6 5 3 8 8 C 1.38820 * 111.00023 * 174.16077 * 7 6 5 9 9 C 1.39960 * 119.96811 * 245.09060 * 8 7 6 10 10 N 1.32131 * 120.31750 * 179.97438 * 9 8 7 11 11 C 1.31928 * 120.27054 * 0.03186 * 10 9 8 12 12 C 1.40678 * 119.93431 * 359.97438 * 11 10 9 13 13 C 1.41274 * 120.15614 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99884 * 6.74300 * 13 12 11 15 15 C 1.40061 * 119.99780 * 186.73940 * 13 12 11 16 16 N 1.30722 * 120.00364 * 6.77190 * 15 13 12 17 17 Si 1.86804 * 119.99582 * 186.77424 * 15 13 12 18 18 H 1.48500 * 109.47379 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47140 * 120.00409 * 17 15 13 20 20 H 1.48508 * 109.46946 * 239.99968 * 17 15 13 21 21 N 1.32233 * 119.96775 * 64.82595 * 8 7 6 22 22 C 1.46846 * 111.19702 * 298.26246 * 7 6 5 23 23 H 1.08997 * 109.46278 * 301.73329 * 22 7 6 24 24 C 1.53001 * 109.46353 * 181.75489 * 22 7 6 25 25 C 1.53041 * 109.52533 * 61.73531 * 22 7 6 26 26 H 1.09005 * 109.46806 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47190 * 60.00376 * 1 2 3 28 28 H 1.08995 * 109.47636 * 299.99753 * 1 2 3 29 29 H 1.09000 * 109.50408 * 302.38183 * 5 3 2 30 30 H 1.08994 * 109.50515 * 62.46107 * 5 3 2 31 31 H 1.09004 * 109.46407 * 179.19520 * 6 5 3 32 32 H 1.09000 * 109.45978 * 299.16870 * 6 5 3 33 33 H 1.08000 * 119.84563 * 0.02562 * 9 8 7 34 34 H 1.07998 * 120.03027 * 179.97438 * 11 10 9 35 35 H 0.96998 * 120.00271 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.47241 * 65.89708 * 24 22 7 37 37 H 1.08994 * 109.47386 * 185.90436 * 24 22 7 38 38 H 1.09001 * 109.46880 * 305.90470 * 24 22 7 39 39 H 1.08999 * 109.50328 * 180.87777 * 25 22 7 40 40 H 1.09003 * 109.49871 * 60.76280 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3465 1.9997 0.5156 5 6 2.2182 1.7730 -1.4432 6 6 2.8964 3.1449 -1.4371 7 7 4.1871 3.0514 -0.7430 8 6 4.8879 4.2463 -0.8328 9 6 6.0971 4.2966 -1.5358 10 7 6.7696 5.4304 -1.6260 11 6 6.3071 6.5252 -1.0534 12 6 5.0929 6.4872 -0.3439 13 6 4.5936 7.6567 0.2715 14 1 5.0847 8.6046 0.1081 15 6 3.4617 7.5868 1.0935 16 7 2.9459 6.4250 1.3983 17 14 2.6890 9.1540 1.7541 18 1 3.4568 10.3281 1.2668 19 1 1.2842 9.2502 1.2826 20 1 2.7122 9.1296 3.2388 21 7 4.4098 5.3372 -0.2584 22 6 4.0086 2.6499 0.6581 23 1 3.3651 3.3702 1.1632 24 6 5.3706 2.6074 1.3538 25 6 3.3636 1.2631 0.7146 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 0.5138 0.8899 29 1 2.8495 1.0574 -1.9701 30 1 1.2533 1.8455 -1.9450 31 1 3.0589 3.4743 -2.4634 32 1 2.2584 3.8630 -0.9221 33 1 6.4820 3.4045 -2.0075 34 1 6.8601 7.4498 -1.1292 35 1 2.1623 6.3766 1.9679 36 1 5.7829 3.6150 1.4072 37 1 5.2517 2.2094 2.3615 38 1 6.0477 1.9674 0.7880 39 1 3.2170 0.9721 1.7548 40 1 4.0129 0.5395 0.2217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158898756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:00 Heat of formation + Delta-G solvation = -1.791782 kcal Electronic energy + Delta-G solvation = -22424.504774 eV Core-core repulsion = 19239.101486 eV Total energy + Delta-G solvation = -3185.403288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.84483 -38.52785 -36.85100 -34.08127 -32.73912 -32.00498 -31.25113 -29.04081 -27.10858 -26.15520 -25.98820 -23.51345 -22.33509 -21.64664 -20.76160 -19.24890 -17.68385 -16.38755 -16.28633 -15.35993 -15.25958 -15.18438 -15.04052 -14.87141 -14.70829 -13.42932 -13.30398 -13.12271 -12.90984 -12.48868 -12.04816 -11.86966 -11.58457 -11.54227 -11.45013 -11.43277 -11.35204 -10.93637 -10.79114 -10.66258 -10.44151 -10.34938 -10.19455 -9.88373 -9.55976 -9.34386 -9.00417 -8.13784 -7.74934 -7.37633 -6.59426 -4.72848 2.41898 2.85937 2.97711 3.01844 3.13933 3.78679 3.82843 4.40024 4.55865 5.02791 5.05573 5.28490 5.35630 5.41569 5.50771 5.57957 5.67087 5.73288 5.79444 5.86125 5.95702 6.03479 6.11784 6.14792 6.21728 6.27246 6.29536 6.33344 6.46509 6.56227 6.73814 6.81651 6.84899 6.92401 7.17034 7.31689 7.49925 7.63701 7.86230 8.09282 8.42259 8.69519 9.21145 9.76071 10.05399 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.006305 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.976302 B = 4439.977036 C = 5464.415975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.089 3.911 4 H 0.059 0.941 5 C -0.133 4.133 6 C 0.068 3.932 7 N -0.476 5.476 8 C 0.273 3.727 9 C -0.086 4.086 10 N -0.427 5.427 11 C -0.071 4.071 12 C 0.220 3.780 13 C -0.418 4.418 14 H 0.090 0.910 15 C 0.071 3.929 16 N -0.715 5.715 17 Si 0.910 3.090 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.272 1.272 21 N -0.478 5.478 22 C 0.093 3.907 23 H 0.067 0.933 24 C -0.136 4.136 25 C -0.104 4.104 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.275 0.725 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.594 -7.228 0.681 9.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.032 3.968 4 H 0.077 0.923 5 C -0.171 4.171 6 C -0.060 4.060 7 N -0.201 5.201 8 C 0.034 3.966 9 C -0.246 4.246 10 N -0.139 5.139 11 C -0.240 4.240 12 C 0.093 3.907 13 C -0.450 4.450 14 H 0.108 0.892 15 C -0.155 4.155 16 N -0.336 5.336 17 Si 0.733 3.267 18 H -0.181 1.181 19 H -0.197 1.197 20 H -0.198 1.198 21 N -0.198 5.198 22 C -0.015 4.015 23 H 0.085 0.915 24 C -0.193 4.193 25 C -0.142 4.142 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.387 -7.878 0.577 9.561 hybrid contribution -1.177 1.516 0.689 2.040 sum -6.564 -6.361 1.265 9.228 Atomic orbital electron populations 1.22733 0.81751 1.02156 0.99858 1.87893 1.19106 1.28514 1.95117 1.22243 0.95026 0.83693 0.95878 0.92338 1.22062 1.00307 0.97768 0.96967 1.21889 0.89600 0.95496 0.99002 1.60191 1.18674 1.26937 1.14270 1.20643 0.92571 0.89388 0.93976 1.22299 0.96369 0.96239 1.09681 1.67723 1.31764 0.99021 1.15436 1.23134 0.98257 0.96456 1.06140 1.19219 0.89147 0.91681 0.90685 1.19645 1.08872 0.94231 1.22293 0.89195 1.26074 0.96569 0.97453 0.95365 1.70021 1.15996 1.25184 1.22422 0.86228 0.79472 0.81946 0.79016 1.18144 1.19733 1.19755 1.69402 1.32192 0.98043 1.20198 1.21472 0.97195 0.94701 0.88134 0.91520 1.21706 0.96377 1.02340 0.98895 1.21697 0.94591 0.97879 1.00051 0.90064 0.94253 0.94265 0.90491 0.91980 0.91194 0.93176 0.85221 0.85008 0.91433 0.92373 0.92897 0.92380 0.91390 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.44 16 2 O -0.39 -5.55 10.35 -35.23 -0.36 -5.91 16 3 C 0.09 1.33 2.68 -26.61 -0.07 1.26 16 4 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 5 C -0.13 -2.01 5.71 -26.65 -0.15 -2.16 16 6 C 0.07 1.25 5.29 -3.83 -0.02 1.23 16 7 N -0.48 -9.49 4.48 -165.51 -0.74 -10.24 16 8 C 0.27 6.36 3.75 -155.03 -0.58 5.78 16 9 C -0.09 -2.01 11.17 -16.78 -0.19 -2.20 16 10 N -0.43 -10.54 10.47 -12.11 -0.13 -10.67 16 11 C -0.07 -1.76 10.97 -16.59 -0.18 -1.94 16 12 C 0.22 5.76 6.52 -84.83 -0.55 5.21 16 13 C -0.42 -10.50 9.15 -37.75 -0.35 -10.85 16 14 H 0.09 2.10 7.86 -52.49 -0.41 1.69 16 15 C 0.07 1.70 5.48 -17.34 -0.09 1.60 16 16 N -0.72 -17.60 11.57 55.55 0.64 -16.95 16 17 Si 0.91 17.55 29.57 -169.99 -5.03 12.53 16 18 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 21 N -0.48 -12.22 7.54 -10.14 -0.08 -12.29 16 22 C 0.09 1.73 2.24 -67.72 -0.15 1.58 16 23 H 0.07 1.44 7.99 -51.93 -0.42 1.02 16 24 C -0.14 -2.48 8.81 37.16 0.33 -2.15 16 25 C -0.10 -1.63 5.03 -26.65 -0.13 -1.76 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.40 7.94 -51.93 -0.41 -0.01 16 28 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.84 7.93 -51.93 -0.41 0.43 16 31 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 32 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.13 2.82 8.06 -52.49 -0.42 2.39 16 34 H 0.13 2.97 8.06 -52.49 -0.42 2.55 16 35 H 0.27 6.15 8.29 -40.82 -0.34 5.81 16 36 H 0.06 1.26 7.31 -51.93 -0.38 0.88 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -27.56 327.27 -8.02 -35.58 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.21 Total: 5.98 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -1.05 Total: -2.96 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.30 Total: -50.15 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.36 Total: -5.91 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.56 -8.02 -35.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158898756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.792 kcal (2) G-P(sol) polarization free energy of solvation -27.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds