Wall clock time and date at job start Mon Mar 30 2020 02:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99408 * 2 1 4 4 H 1.09001 * 109.52417 * 30.12180 * 3 2 1 5 5 C 1.53124 * 109.51950 * 270.00027 * 3 2 1 6 6 C 1.53037 * 109.27501 * 182.44715 * 5 3 2 7 7 N 1.46848 * 109.53005 * 59.17444 * 6 5 3 8 8 C 1.38820 * 111.00023 * 174.16077 * 7 6 5 9 9 C 1.39960 * 119.96811 * 245.09060 * 8 7 6 10 10 N 1.32131 * 120.31750 * 179.97438 * 9 8 7 11 11 C 1.31928 * 120.27054 * 0.03186 * 10 9 8 12 12 C 1.40678 * 119.93431 * 359.97438 * 11 10 9 13 13 C 1.41274 * 120.15614 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99884 * 6.74300 * 13 12 11 15 15 C 1.40061 * 119.99780 * 186.73940 * 13 12 11 16 16 N 1.30722 * 120.00364 * 6.77190 * 15 13 12 17 17 Si 1.86804 * 119.99582 * 186.77424 * 15 13 12 18 18 H 1.48500 * 109.47379 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47140 * 120.00409 * 17 15 13 20 20 H 1.48508 * 109.46946 * 239.99968 * 17 15 13 21 21 N 1.32233 * 119.96775 * 64.82595 * 8 7 6 22 22 C 1.46846 * 111.19702 * 298.26246 * 7 6 5 23 23 H 1.08997 * 109.46278 * 301.73329 * 22 7 6 24 24 C 1.53001 * 109.46353 * 181.75489 * 22 7 6 25 25 C 1.53041 * 109.52533 * 61.73531 * 22 7 6 26 26 H 1.09005 * 109.46806 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47190 * 60.00376 * 1 2 3 28 28 H 1.08995 * 109.47636 * 299.99753 * 1 2 3 29 29 H 1.09000 * 109.50408 * 302.38183 * 5 3 2 30 30 H 1.08994 * 109.50515 * 62.46107 * 5 3 2 31 31 H 1.09004 * 109.46407 * 179.19520 * 6 5 3 32 32 H 1.09000 * 109.45978 * 299.16870 * 6 5 3 33 33 H 1.08000 * 119.84563 * 0.02562 * 9 8 7 34 34 H 1.07998 * 120.03027 * 179.97438 * 11 10 9 35 35 H 0.96998 * 120.00271 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.47241 * 65.89708 * 24 22 7 37 37 H 1.08994 * 109.47386 * 185.90436 * 24 22 7 38 38 H 1.09001 * 109.46880 * 305.90470 * 24 22 7 39 39 H 1.08999 * 109.50328 * 180.87777 * 25 22 7 40 40 H 1.09003 * 109.49871 * 60.76280 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3465 1.9997 0.5156 5 6 2.2182 1.7730 -1.4432 6 6 2.8964 3.1449 -1.4371 7 7 4.1871 3.0514 -0.7430 8 6 4.8879 4.2463 -0.8328 9 6 6.0971 4.2966 -1.5358 10 7 6.7696 5.4304 -1.6260 11 6 6.3071 6.5252 -1.0534 12 6 5.0929 6.4872 -0.3439 13 6 4.5936 7.6567 0.2715 14 1 5.0847 8.6046 0.1081 15 6 3.4617 7.5868 1.0935 16 7 2.9459 6.4250 1.3983 17 14 2.6890 9.1540 1.7541 18 1 3.4568 10.3281 1.2668 19 1 1.2842 9.2502 1.2826 20 1 2.7122 9.1296 3.2388 21 7 4.4098 5.3372 -0.2584 22 6 4.0086 2.6499 0.6581 23 1 3.3651 3.3702 1.1632 24 6 5.3706 2.6074 1.3538 25 6 3.3636 1.2631 0.7146 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 0.5138 0.8899 29 1 2.8495 1.0574 -1.9701 30 1 1.2533 1.8455 -1.9450 31 1 3.0589 3.4743 -2.4634 32 1 2.2584 3.8630 -0.9221 33 1 6.4820 3.4045 -2.0075 34 1 6.8601 7.4498 -1.1292 35 1 2.1623 6.3766 1.9679 36 1 5.7829 3.6150 1.4072 37 1 5.2517 2.2094 2.3615 38 1 6.0477 1.9674 0.7880 39 1 3.2170 0.9721 1.7548 40 1 4.0129 0.5395 0.2217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158898756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:59 Heat of formation + Delta-G solvation = -19.197815 kcal Electronic energy + Delta-G solvation = -22425.259557 eV Core-core repulsion = 19239.101486 eV Total energy + Delta-G solvation = -3186.158070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.50078 -40.02122 -38.20021 -35.93347 -34.33504 -33.44065 -33.02894 -30.72530 -28.46267 -27.86213 -27.19313 -25.06940 -24.09174 -23.29942 -22.22023 -20.73026 -19.53780 -18.06846 -17.43573 -17.09322 -16.97233 -16.71543 -16.56169 -16.19148 -16.04369 -14.99349 -14.83704 -14.58560 -14.21741 -14.08387 -13.43151 -13.42224 -13.24380 -13.08130 -13.01589 -12.85970 -12.71923 -12.64708 -12.08373 -12.06954 -11.94332 -11.74626 -11.70005 -11.52099 -11.45516 -10.86283 -10.46014 -9.85399 -9.64029 -9.19537 -8.41969 -6.65200 0.56614 1.06049 1.38753 1.49183 1.53765 2.16048 2.71646 2.72975 2.84864 3.69675 3.74419 3.81525 4.02692 4.10474 4.15157 4.24569 4.36164 4.42821 4.46640 4.51387 4.54822 4.56311 4.59959 4.76396 4.81653 4.88131 4.89316 4.90145 4.97969 5.03689 5.09328 5.19081 5.20443 5.28349 5.39719 5.66808 6.00631 6.08098 6.24668 6.25823 6.56040 6.82353 7.30268 7.86372 8.26825 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.006305 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.976302 B = 4439.977036 C = 5464.415975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.095 3.905 4 H 0.053 0.947 5 C -0.121 4.121 6 C 0.073 3.927 7 N -0.472 5.472 8 C 0.275 3.725 9 C -0.097 4.097 10 N -0.435 5.435 11 C -0.091 4.091 12 C 0.191 3.809 13 C -0.441 4.441 14 H 0.100 0.900 15 C 0.029 3.971 16 N -0.743 5.743 17 Si 0.988 3.012 18 H -0.251 1.251 19 H -0.268 1.268 20 H -0.266 1.266 21 N -0.497 5.497 22 C 0.097 3.903 23 H 0.033 0.967 24 C -0.127 4.127 25 C -0.095 4.095 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.022 0.978 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.282 0.718 36 H 0.016 0.984 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 -8.068 1.109 10.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C 0.037 3.963 4 H 0.071 0.929 5 C -0.159 4.159 6 C -0.055 4.055 7 N -0.196 5.196 8 C 0.035 3.965 9 C -0.258 4.258 10 N -0.147 5.147 11 C -0.259 4.259 12 C 0.063 3.937 13 C -0.473 4.473 14 H 0.118 0.882 15 C -0.194 4.194 16 N -0.364 5.364 17 Si 0.808 3.192 18 H -0.174 1.174 19 H -0.193 1.193 20 H -0.190 1.190 21 N -0.218 5.218 22 C -0.010 4.010 23 H 0.051 0.949 24 C -0.185 4.185 25 C -0.133 4.133 26 H 0.122 0.878 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.093 0.907 36 H 0.035 0.965 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.658 -8.726 0.995 11.021 hybrid contribution -0.808 1.700 0.556 1.962 sum -7.467 -7.026 1.551 10.369 Atomic orbital electron populations 1.22978 0.79874 1.03885 1.00501 1.87868 1.21117 1.27482 1.95161 1.22067 0.94669 0.84251 0.95342 0.92879 1.21975 1.00933 0.95360 0.97637 1.21869 0.88573 0.97158 0.97906 1.60326 1.19207 1.24884 1.15197 1.20957 0.92726 0.89937 0.92865 1.22631 0.96638 0.96572 1.09918 1.67717 1.32056 0.99356 1.15569 1.23330 0.98491 0.97194 1.06849 1.19656 0.89953 0.92512 0.91548 1.20043 1.09963 0.94411 1.22868 0.88229 1.26976 0.96458 1.00916 0.95075 1.70100 1.16358 1.27399 1.22574 0.85051 0.78283 0.77474 0.78349 1.17425 1.19335 1.19034 1.69426 1.32809 0.98556 1.20961 1.21442 0.96952 0.95786 0.86867 0.94854 1.21641 0.96173 1.00050 1.00630 1.21594 0.94904 0.95464 1.01344 0.87848 0.93520 0.93748 0.89975 0.89961 0.91815 0.95928 0.83485 0.83591 0.90704 0.96518 0.90408 0.91377 0.89838 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.82 113.37 1.23 1.67 16 2 O -0.40 -10.29 10.35 -148.98 -1.54 -11.83 16 3 C 0.09 2.66 2.68 30.67 0.08 2.75 16 4 H 0.05 1.56 7.79 -2.39 -0.02 1.54 16 5 C -0.12 -3.46 5.71 30.65 0.18 -3.29 16 6 C 0.07 2.68 5.29 86.33 0.46 3.14 16 7 N -0.47 -18.91 4.48 -677.55 -3.03 -21.94 16 8 C 0.27 13.10 3.75 133.38 0.50 13.60 16 9 C -0.10 -4.63 11.17 85.07 0.95 -3.68 16 10 N -0.43 -21.84 10.47 -192.24 -2.01 -23.85 16 11 C -0.09 -4.62 10.97 85.27 0.94 -3.68 16 12 C 0.19 10.28 6.52 40.15 0.26 10.54 16 13 C -0.44 -22.58 9.15 23.46 0.21 -22.36 16 14 H 0.10 4.71 7.86 -2.91 -0.02 4.68 16 15 C 0.03 1.40 5.48 85.30 0.47 1.87 16 16 N -0.74 -37.24 11.57 21.84 0.25 -36.98 16 17 Si 0.99 35.69 29.57 68.60 2.03 37.72 16 18 H -0.25 -8.71 7.11 99.48 0.71 -8.01 16 19 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 20 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 21 N -0.50 -26.26 7.54 -186.00 -1.40 -27.66 16 22 C 0.10 3.62 2.24 44.94 0.10 3.73 16 23 H 0.03 1.48 7.99 -2.39 -0.02 1.46 16 24 C -0.13 -4.65 8.81 71.98 0.63 -4.02 16 25 C -0.10 -2.81 5.03 30.65 0.15 -2.66 16 26 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.05 0.82 7.94 -2.38 -0.02 0.80 16 28 H 0.04 0.80 8.09 -2.39 -0.02 0.78 16 29 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.08 2.03 7.93 -2.39 -0.02 2.01 16 31 H 0.06 2.40 8.10 -2.39 -0.02 2.38 16 32 H 0.02 0.95 8.08 -2.39 -0.02 0.93 16 33 H 0.15 6.36 8.06 -2.91 -0.02 6.34 16 34 H 0.15 6.76 8.06 -2.91 -0.02 6.73 16 35 H 0.28 12.78 8.29 -92.71 -0.77 12.01 16 36 H 0.02 0.71 7.31 -2.39 -0.02 0.70 16 37 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -60.40 327.27 1.46 -58.93 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 1.01 Total: 28.04 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 6.16 Total: -2.41 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -6.20 Total: -110.44 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.54 Total: -11.83 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.72 kcal Total: -60.40 1.46 -58.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158898756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.735 kcal (2) G-P(sol) polarization free energy of solvation -60.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds