Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47260 * 2 1 4 4 N 1.46498 * 109.47163 * 239.99869 * 2 1 3 5 5 C 1.39085 * 120.00127 * 85.00445 * 4 2 1 6 6 C 1.38752 * 119.65141 * 359.72505 * 5 4 2 7 7 C 1.40783 * 118.66292 * 179.78038 * 6 5 4 8 8 C 1.41548 * 120.98916 * 180.21433 * 7 6 5 9 9 H 1.08006 * 119.99709 * 203.56891 * 8 7 6 10 10 C 1.40025 * 120.00319 * 23.57428 * 8 7 6 11 11 N 1.30737 * 119.99892 * 16.98461 * 10 8 7 12 12 Si 1.86797 * 120.00009 * 196.99247 * 10 8 7 13 13 H 1.48494 * 109.47598 * 89.99238 * 12 10 8 14 14 H 1.48507 * 109.47073 * 209.99680 * 12 10 8 15 15 H 1.48504 * 109.46976 * 329.99300 * 12 10 8 16 16 C 1.41187 * 118.01650 * 0.48280 * 7 6 5 17 17 C 1.36564 * 119.14341 * 359.75697 * 16 7 6 18 18 N 1.32090 * 121.26790 * 359.97438 * 17 16 7 19 19 C 1.53006 * 109.46937 * 120.00207 * 2 1 3 20 20 H 1.09003 * 109.50687 * 174.91515 * 19 2 1 21 21 C 1.53093 * 109.50493 * 294.99933 * 19 2 1 22 22 N 1.47015 * 109.29608 * 176.80381 * 21 19 2 23 23 C 1.47014 * 110.75047 * 301.45429 * 22 21 19 24 24 C 1.53099 * 109.29700 * 58.54213 * 23 22 21 25 25 O 1.43011 * 109.53903 * 54.80311 * 19 2 1 26 26 H 1.09002 * 109.47187 * 300.00471 * 1 2 3 27 27 H 1.09003 * 109.46987 * 59.99767 * 1 2 3 28 28 H 1.08993 * 109.47339 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00394 * 265.00337 * 4 2 1 30 30 H 1.07991 * 120.66924 * 359.97438 * 6 5 4 31 31 H 0.97002 * 119.99859 * 180.02562 * 11 10 8 32 32 H 1.07991 * 120.42870 * 179.77217 * 16 7 6 33 33 H 1.07999 * 119.36430 * 180.02562 * 17 16 7 34 34 H 1.09003 * 109.50846 * 296.76263 * 21 19 2 35 35 H 1.09003 * 109.51172 * 56.84580 * 21 19 2 36 36 H 1.00906 * 110.99669 * 65.17770 * 22 21 19 37 37 H 1.09000 * 109.46949 * 298.61005 * 23 22 21 38 38 H 1.09000 * 109.54432 * 178.52203 * 23 22 21 39 39 H 1.09001 * 109.51062 * 183.23636 * 24 23 22 40 40 H 1.09007 * 109.50336 * 63.11014 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1512 0.0032 -2.3942 6 6 1.8138 1.3479 -2.4498 7 6 1.9609 2.0311 -3.6720 8 6 1.6357 3.4042 -3.7831 9 1 1.3836 3.8232 -4.7461 10 6 1.6409 4.2193 -2.6446 11 7 2.2516 3.8221 -1.5590 12 14 0.7751 5.8742 -2.6768 13 1 -0.6351 5.7037 -2.2440 14 1 1.4656 6.8122 -1.7555 15 1 0.8065 6.4225 -4.0565 16 6 2.4370 1.3043 -4.7849 17 6 2.7388 -0.0191 -4.6352 18 7 2.5941 -0.6281 -3.4720 19 6 2.0399 -0.7213 1.2493 20 1 3.1261 -0.8012 1.2055 21 6 1.6353 0.0687 2.4966 22 7 2.0604 -0.6668 3.6966 23 6 1.4547 -2.0059 3.7285 24 6 1.8610 -2.7752 2.4687 25 8 1.4669 -2.0301 1.3133 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 2.2490 -1.6318 -1.1526 30 1 1.4487 1.8609 -1.5725 31 1 2.2549 4.3866 -0.7702 32 1 2.5610 1.7887 -5.7420 33 1 3.1036 -0.5784 -5.4841 34 1 2.1161 1.0468 2.4799 35 1 0.5528 0.1956 2.5120 36 1 3.0665 -0.7243 3.7479 37 1 0.3692 -1.9130 3.7639 38 1 1.8030 -2.5427 4.6109 39 1 1.3678 -3.7472 2.4607 40 1 2.9421 -2.9148 2.4604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159501668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = -33.035912 kcal Electronic energy + Delta-G solvation = -21963.912224 eV Core-core repulsion = 18777.154089 eV Total energy + Delta-G solvation = -3186.758135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.02254 -40.14857 -37.22555 -35.91168 -35.46497 -33.34090 -32.27346 -30.43840 -29.22448 -27.79678 -27.10254 -25.26904 -23.86781 -22.98313 -22.14307 -21.22183 -19.59517 -17.73763 -17.61780 -17.18513 -17.08485 -16.62250 -16.19095 -16.05786 -15.79105 -15.57852 -15.09185 -14.72918 -14.45554 -14.28542 -13.85586 -13.76934 -13.52896 -13.13515 -12.92987 -12.84322 -12.65509 -12.47725 -12.24340 -12.05365 -11.93349 -11.88593 -11.71329 -11.27489 -11.13881 -10.67368 -9.88387 -9.79485 -9.29925 -8.66120 -8.18899 -6.50679 1.06840 1.15561 1.40623 1.53006 1.61644 2.21460 2.47256 2.69292 2.84586 3.17960 3.75276 3.76735 3.84473 3.91842 4.11513 4.21909 4.27273 4.34101 4.40595 4.45433 4.60679 4.71321 4.77965 4.87166 4.91384 4.98071 5.01826 5.07337 5.15637 5.26531 5.32220 5.39245 5.65845 5.79632 6.01404 6.09404 6.15900 6.30119 6.37421 6.63430 6.92112 6.93856 7.10337 7.90624 8.31207 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.005434 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.182445 B = 5151.755273 C = 6399.312600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.174 3.826 3 H 0.078 0.922 4 N -0.725 5.725 5 C 0.382 3.618 6 C -0.301 4.301 7 C 0.120 3.880 8 C -0.491 4.491 9 H 0.078 0.922 10 C 0.043 3.957 11 N -0.808 5.808 12 Si 0.982 3.018 13 H -0.262 1.262 14 H -0.265 1.265 15 H -0.260 1.260 16 C -0.325 4.325 17 C 0.130 3.870 18 N -0.638 5.638 19 C 0.063 3.937 20 H 0.056 0.944 21 C 0.034 3.966 22 N -0.682 5.682 23 C 0.023 3.977 24 C 0.016 3.984 25 O -0.389 6.389 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.394 0.606 30 H 0.124 0.876 31 H 0.290 0.710 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.348 0.652 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 -6.120 12.320 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.067 3.933 3 H 0.095 0.905 4 N -0.360 5.360 5 C 0.152 3.848 6 C -0.328 4.328 7 C 0.112 3.888 8 C -0.521 4.521 9 H 0.096 0.904 10 C -0.175 4.175 11 N -0.433 5.433 12 Si 0.802 3.198 13 H -0.186 1.186 14 H -0.189 1.189 15 H -0.184 1.184 16 C -0.350 4.350 17 C -0.022 4.022 18 N -0.361 5.361 19 C 0.003 3.997 20 H 0.074 0.926 21 C -0.097 4.097 22 N -0.311 5.311 23 C -0.106 4.106 24 C -0.061 4.061 25 O -0.308 6.308 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.228 0.772 30 H 0.142 0.858 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.169 0.831 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.166 0.834 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.970 -6.592 13.049 14.752 hybrid contribution 0.429 0.823 -0.990 1.357 sum -1.541 -5.768 12.060 13.457 Atomic orbital electron populations 1.22093 0.95448 1.01978 1.01397 1.20765 0.94404 0.95666 0.82439 0.90457 1.44172 1.73934 1.11843 1.06005 1.18411 0.91193 0.88823 0.86354 1.21519 1.17598 0.92642 1.01010 1.18046 0.85715 0.93651 0.91410 1.19857 1.42779 0.93689 0.95787 0.90430 1.26744 0.92933 1.03934 0.93860 1.69838 1.30599 1.39234 1.03624 0.85209 0.78932 0.76049 0.79572 1.18635 1.18897 1.18378 1.21679 1.16106 0.97041 1.00180 1.21746 0.94820 0.91998 0.93666 1.66884 1.28981 1.40405 0.99874 1.22904 0.96589 0.84638 0.95619 0.92576 1.22626 1.02840 0.97535 0.86677 1.60936 1.14725 1.17444 1.37991 1.22720 1.01133 0.88841 0.97929 1.23488 1.00116 0.96383 0.86154 1.88077 1.71546 1.26626 1.44565 0.90301 0.94821 0.92113 0.77155 0.85794 0.89889 0.87520 0.83090 0.89087 0.89478 0.83415 0.90352 0.87306 0.86882 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 8.96 71.98 0.64 -4.39 16 2 C 0.17 6.08 2.13 44.99 0.10 6.18 16 3 H 0.08 3.09 6.46 -2.39 -0.02 3.07 16 4 N -0.73 -29.91 5.23 -324.70 -1.70 -31.61 16 5 C 0.38 19.08 7.63 132.91 1.01 20.10 16 6 C -0.30 -16.14 7.51 23.02 0.17 -15.96 16 7 C 0.12 6.67 5.61 -21.12 -0.12 6.55 16 8 C -0.49 -26.51 9.12 23.52 0.21 -26.30 16 9 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 10 C 0.04 2.10 5.20 85.29 0.44 2.55 16 11 N -0.81 -40.52 10.92 21.84 0.24 -40.28 16 12 Si 0.98 37.13 29.59 68.60 2.03 39.16 16 13 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 14 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 15 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 16 C -0.32 -16.69 9.85 22.60 0.22 -16.47 16 17 C 0.13 6.24 11.10 84.26 0.94 7.18 16 18 N -0.64 -32.07 10.36 -194.46 -2.02 -34.09 16 19 C 0.06 1.71 2.63 30.63 0.08 1.79 16 20 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 21 C 0.03 0.77 5.87 86.31 0.51 1.28 16 22 N -0.68 -12.93 6.93 -512.99 -3.56 -16.48 16 23 C 0.02 0.37 6.76 86.31 0.58 0.96 16 24 C 0.02 0.30 7.01 72.02 0.50 0.81 16 25 O -0.39 -10.33 9.33 -148.98 -1.39 -11.72 16 26 H 0.08 2.21 6.50 -2.39 -0.02 2.20 16 27 H 0.03 1.30 7.63 -2.39 -0.02 1.29 16 28 H 0.06 2.00 7.56 -2.39 -0.02 1.98 16 29 H 0.39 15.58 8.52 -92.71 -0.79 14.79 16 30 H 0.12 6.63 4.19 -2.92 -0.01 6.62 16 31 H 0.29 12.97 8.29 -92.71 -0.77 12.20 16 32 H 0.11 5.08 8.06 -2.92 -0.02 5.05 16 33 H 0.15 6.02 8.06 -2.91 -0.02 6.00 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 2.05 6.43 -2.39 -0.02 2.03 16 36 H 0.35 5.77 8.89 -89.69 -0.80 4.97 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -62.71 320.40 -1.61 -64.32 By element: Atomic # 1 Polarization: 46.94 SS G_CDS: -0.52 Total: 46.43 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 5.30 Total: -15.73 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -7.03 Total: -122.46 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -1.39 Total: -11.72 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Total: -62.71 -1.61 -64.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159501668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.286 kcal (2) G-P(sol) polarization free energy of solvation -62.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds