Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47073 * 2 1 4 4 N 1.46503 * 109.46781 * 239.99973 * 2 1 3 5 5 C 1.39080 * 119.99747 * 84.99838 * 4 2 1 6 6 C 1.38738 * 119.65894 * 359.72828 * 5 4 2 7 7 C 1.40780 * 118.66687 * 179.77455 * 6 5 4 8 8 C 1.41556 * 120.99268 * 180.21035 * 7 6 5 9 9 H 1.07996 * 120.00343 * 203.54866 * 8 7 6 10 10 C 1.40024 * 119.99908 * 23.56169 * 8 7 6 11 11 N 1.30744 * 120.00304 * 17.00059 * 10 8 7 12 12 Si 1.86800 * 120.00162 * 197.00231 * 10 8 7 13 13 H 1.48503 * 109.46957 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46939 * 119.99460 * 12 10 8 15 15 H 1.48498 * 109.47378 * 239.99771 * 12 10 8 16 16 C 1.41185 * 118.01535 * 0.48987 * 7 6 5 17 17 C 1.36552 * 119.14638 * 359.74555 * 16 7 6 18 18 N 1.32100 * 121.26807 * 0.02562 * 17 16 7 19 19 C 1.53004 * 109.47159 * 120.00121 * 2 1 3 20 20 H 1.08993 * 109.50519 * 300.08429 * 19 2 1 21 21 C 1.53095 * 109.50343 * 179.97438 * 19 2 1 22 22 N 1.47017 * 109.25422 * 183.17439 * 21 19 2 23 23 C 1.47006 * 110.75456 * 58.61931 * 22 21 19 24 24 C 1.53102 * 109.25642 * 301.38303 * 23 22 21 25 25 O 1.43007 * 109.25990 * 56.84727 * 24 23 22 26 26 H 1.09002 * 109.47509 * 59.99701 * 1 2 3 27 27 H 1.08995 * 109.47486 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46831 * 300.00031 * 1 2 3 29 29 H 0.96997 * 119.99834 * 265.00450 * 4 2 1 30 30 H 1.07999 * 120.66750 * 359.97438 * 6 5 4 31 31 H 0.96997 * 120.00751 * 180.02562 * 11 10 8 32 32 H 1.07997 * 120.42900 * 179.77882 * 16 7 6 33 33 H 1.08002 * 119.37035 * 179.97438 * 17 16 7 34 34 H 1.08996 * 109.50800 * 63.24064 * 21 19 2 35 35 H 1.08999 * 109.54757 * 303.13015 * 21 19 2 36 36 H 1.00896 * 110.99924 * 182.39642 * 22 21 19 37 37 H 1.09001 * 109.51228 * 61.31466 * 23 22 21 38 38 H 1.09000 * 109.50755 * 181.45063 * 23 22 21 39 39 H 1.09006 * 109.50623 * 296.91310 * 24 23 22 40 40 H 1.09002 * 109.50502 * 176.78457 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1510 0.0032 -2.3942 6 6 1.8136 1.3478 -2.4499 7 6 1.9607 2.0310 -3.6720 8 6 1.6354 3.4041 -3.7832 9 1 1.3836 3.8232 -4.7462 10 6 1.6403 4.2192 -2.6446 11 7 2.2510 3.8221 -1.5589 12 14 0.7741 5.8739 -2.6767 13 1 0.1636 6.0872 -4.0136 14 1 -0.2877 5.8970 -1.6389 15 1 1.7573 6.9527 -2.4032 16 6 2.4366 1.3042 -4.7849 17 6 2.7385 -0.0191 -4.6354 18 7 2.5931 -0.6284 -3.4723 19 6 2.0400 -0.7213 1.2493 20 1 1.6758 -0.2088 2.1396 21 6 3.5710 -0.7223 1.2497 22 7 4.0550 -1.4819 2.4116 23 6 3.5501 -2.8622 2.3787 24 6 2.0193 -2.8397 2.3669 25 8 1.5674 -2.0711 1.2487 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.2489 -1.6318 -1.1527 30 1 1.4486 1.8609 -1.5725 31 1 2.2542 4.3865 -0.7701 32 1 2.5607 1.7887 -5.7421 33 1 3.1024 -0.5787 -5.4844 34 1 3.9356 0.3032 1.3077 35 1 3.9356 -1.1869 0.3336 36 1 5.0627 -1.4665 2.4594 37 1 3.9137 -3.3615 1.4806 38 1 3.8994 -3.3986 3.2609 39 1 1.6548 -2.3886 3.2898 40 1 1.6410 -3.8587 2.2849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159501669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = -12.428600 kcal Electronic energy + Delta-G solvation = -22077.026963 eV Core-core repulsion = 18891.162428 eV Total energy + Delta-G solvation = -3185.864535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.66979 -38.32169 -35.67775 -34.53336 -34.00513 -31.56788 -30.41055 -29.39287 -27.45103 -26.43124 -25.83207 -23.87153 -22.11154 -21.11676 -20.68317 -19.63778 -17.81367 -16.87547 -16.35695 -15.53725 -15.40282 -14.84986 -14.60645 -14.43267 -14.31273 -14.12920 -13.77170 -13.59679 -13.05569 -12.84524 -12.50730 -12.33849 -11.88466 -11.74965 -11.42763 -11.37906 -11.28566 -11.10533 -10.84117 -10.59223 -10.34798 -10.16799 -9.83004 -9.64742 -9.40312 -8.91388 -8.55857 -7.91558 -7.82585 -6.79696 -6.34916 -4.51259 2.82920 3.05983 3.09395 3.11607 3.36762 3.76027 3.91023 4.03780 4.21894 4.75319 4.85184 4.93598 5.04288 5.12963 5.33968 5.36016 5.60591 5.68114 5.77728 5.81177 5.93488 5.94694 6.04803 6.09514 6.21148 6.45154 6.74249 6.77244 6.80635 6.92895 7.02147 7.10731 7.15187 7.23912 7.33086 7.60629 7.93366 8.03601 8.22635 8.51123 8.85075 8.88525 8.97411 9.82599 10.15005 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.005335 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.425890 B = 5247.314618 C = 6020.439418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.171 3.829 3 H 0.101 0.899 4 N -0.731 5.731 5 C 0.387 3.613 6 C -0.280 4.280 7 C 0.151 3.849 8 C -0.457 4.457 9 H 0.079 0.921 10 C 0.081 3.919 11 N -0.786 5.786 12 Si 0.906 3.094 13 H -0.260 1.260 14 H -0.271 1.271 15 H -0.274 1.274 16 C -0.303 4.303 17 C 0.130 3.870 18 N -0.624 5.624 19 C 0.091 3.909 20 H 0.073 0.927 21 C 0.026 3.974 22 N -0.690 5.690 23 C 0.018 3.982 24 C 0.064 3.936 25 O -0.375 6.375 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.391 0.609 30 H 0.129 0.871 31 H 0.279 0.721 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.344 0.656 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 -6.727 9.614 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.064 3.936 3 H 0.118 0.882 4 N -0.366 5.366 5 C 0.158 3.842 6 C -0.307 4.307 7 C 0.143 3.857 8 C -0.488 4.488 9 H 0.097 0.903 10 C -0.138 4.138 11 N -0.412 5.412 12 Si 0.730 3.270 13 H -0.184 1.184 14 H -0.196 1.196 15 H -0.200 1.200 16 C -0.329 4.329 17 C -0.022 4.022 18 N -0.347 5.347 19 C 0.033 3.967 20 H 0.090 0.910 21 C -0.104 4.104 22 N -0.322 5.322 23 C -0.112 4.112 24 C -0.014 4.014 25 O -0.293 6.293 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.225 0.775 30 H 0.147 0.853 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.162 0.838 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.097 -7.245 10.293 12.587 hybrid contribution 0.387 1.050 -0.499 1.226 sum 0.290 -6.194 9.793 11.592 Atomic orbital electron populations 1.22183 0.95987 1.02092 1.01783 1.20794 0.93935 0.96568 0.82351 0.88173 1.44060 1.74565 1.11767 1.06254 1.18159 0.91959 0.88775 0.85259 1.21520 1.16046 0.91931 1.01175 1.17596 0.85060 0.92710 0.90348 1.19608 1.41133 0.93255 0.94801 0.90296 1.25907 0.92909 1.00247 0.94762 1.69810 1.30862 1.37516 1.03001 0.86300 0.79847 0.81142 0.79682 1.18371 1.19646 1.19981 1.21475 1.15122 0.96278 0.99978 1.21210 0.96043 0.92044 0.92940 1.66746 1.28311 1.40227 0.99394 1.22511 0.92340 0.83315 0.98570 0.90961 1.22609 0.96235 0.99648 0.91871 1.60590 1.15438 1.12887 1.43251 1.22611 0.97104 0.90253 1.01202 1.22598 0.92521 0.96310 0.89944 1.88027 1.72597 1.23028 1.45669 0.91741 0.92249 0.92867 0.77520 0.85323 0.91030 0.88594 0.86582 0.89380 0.93174 0.83816 0.94231 0.90072 0.92651 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.25 37.16 0.34 -2.38 16 2 C 0.17 3.00 2.10 -67.93 -0.14 2.85 16 3 H 0.10 1.96 6.46 -51.93 -0.34 1.62 16 4 N -0.73 -14.68 4.48 -53.98 -0.24 -14.92 16 5 C 0.39 9.36 7.63 -154.98 -1.18 8.18 16 6 C -0.28 -7.23 7.51 -38.44 -0.29 -7.52 16 7 C 0.15 4.07 5.61 -106.55 -0.60 3.47 16 8 C -0.46 -12.04 9.12 -37.65 -0.34 -12.38 16 9 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 10 C 0.08 1.98 5.20 -17.35 -0.09 1.89 16 11 N -0.79 -19.53 10.92 55.55 0.61 -18.92 16 12 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 13 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 14 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 15 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 16 C -0.30 -7.62 9.85 -39.07 -0.38 -8.00 16 17 C 0.13 3.11 11.10 -18.04 -0.20 2.91 16 18 N -0.62 -15.46 10.37 -12.82 -0.13 -15.59 16 19 C 0.09 1.35 2.55 -26.68 -0.07 1.28 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 21 C 0.03 0.37 5.93 -3.71 -0.02 0.35 16 22 N -0.69 -8.22 6.92 -113.50 -0.79 -9.01 16 23 C 0.02 0.19 6.76 -3.71 -0.03 0.17 16 24 C 0.06 0.72 7.01 37.21 0.26 0.98 16 25 O -0.37 -5.46 9.31 -35.23 -0.33 -5.79 16 26 H 0.06 1.23 7.63 -51.93 -0.40 0.83 16 27 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.39 7.70 8.11 -40.82 -0.33 7.37 16 30 H 0.13 3.31 4.19 -52.49 -0.22 3.09 16 31 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 32 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.05 0.81 7.36 -51.93 -0.38 0.43 16 36 H 0.34 3.55 8.90 -39.29 -0.35 3.20 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -28.48 322.18 -9.57 -38.05 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -5.77 Total: 16.31 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.74 Total: -8.21 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.55 Total: -58.44 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.33 Total: -5.79 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.48 -9.57 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159501669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.620 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds