Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47073 * 2 1 4 4 N 1.46503 * 109.46781 * 239.99973 * 2 1 3 5 5 C 1.39080 * 119.99747 * 84.99838 * 4 2 1 6 6 C 1.38738 * 119.65894 * 359.72828 * 5 4 2 7 7 C 1.40780 * 118.66687 * 179.77455 * 6 5 4 8 8 C 1.41556 * 120.99268 * 180.21035 * 7 6 5 9 9 H 1.07996 * 120.00343 * 203.54866 * 8 7 6 10 10 C 1.40024 * 119.99908 * 23.56169 * 8 7 6 11 11 N 1.30744 * 120.00304 * 17.00059 * 10 8 7 12 12 Si 1.86800 * 120.00162 * 197.00231 * 10 8 7 13 13 H 1.48503 * 109.46957 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46939 * 119.99460 * 12 10 8 15 15 H 1.48498 * 109.47378 * 239.99771 * 12 10 8 16 16 C 1.41185 * 118.01535 * 0.48987 * 7 6 5 17 17 C 1.36552 * 119.14638 * 359.74555 * 16 7 6 18 18 N 1.32100 * 121.26807 * 0.02562 * 17 16 7 19 19 C 1.53004 * 109.47159 * 120.00121 * 2 1 3 20 20 H 1.08993 * 109.50519 * 300.08429 * 19 2 1 21 21 C 1.53095 * 109.50343 * 179.97438 * 19 2 1 22 22 N 1.47017 * 109.25422 * 183.17439 * 21 19 2 23 23 C 1.47006 * 110.75456 * 58.61931 * 22 21 19 24 24 C 1.53102 * 109.25642 * 301.38303 * 23 22 21 25 25 O 1.43007 * 109.25990 * 56.84727 * 24 23 22 26 26 H 1.09002 * 109.47509 * 59.99701 * 1 2 3 27 27 H 1.08995 * 109.47486 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46831 * 300.00031 * 1 2 3 29 29 H 0.96997 * 119.99834 * 265.00450 * 4 2 1 30 30 H 1.07999 * 120.66750 * 359.97438 * 6 5 4 31 31 H 0.96997 * 120.00751 * 180.02562 * 11 10 8 32 32 H 1.07997 * 120.42900 * 179.77882 * 16 7 6 33 33 H 1.08002 * 119.37035 * 179.97438 * 17 16 7 34 34 H 1.08996 * 109.50800 * 63.24064 * 21 19 2 35 35 H 1.08999 * 109.54757 * 303.13015 * 21 19 2 36 36 H 1.00896 * 110.99924 * 182.39642 * 22 21 19 37 37 H 1.09001 * 109.51228 * 61.31466 * 23 22 21 38 38 H 1.09000 * 109.50755 * 181.45063 * 23 22 21 39 39 H 1.09006 * 109.50623 * 296.91310 * 24 23 22 40 40 H 1.09002 * 109.50502 * 176.78457 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1510 0.0032 -2.3942 6 6 1.8136 1.3478 -2.4499 7 6 1.9607 2.0310 -3.6720 8 6 1.6354 3.4041 -3.7832 9 1 1.3836 3.8232 -4.7462 10 6 1.6403 4.2192 -2.6446 11 7 2.2510 3.8221 -1.5589 12 14 0.7741 5.8739 -2.6767 13 1 0.1636 6.0872 -4.0136 14 1 -0.2877 5.8970 -1.6389 15 1 1.7573 6.9527 -2.4032 16 6 2.4366 1.3042 -4.7849 17 6 2.7385 -0.0191 -4.6354 18 7 2.5931 -0.6284 -3.4723 19 6 2.0400 -0.7213 1.2493 20 1 1.6758 -0.2088 2.1396 21 6 3.5710 -0.7223 1.2497 22 7 4.0550 -1.4819 2.4116 23 6 3.5501 -2.8622 2.3787 24 6 2.0193 -2.8397 2.3669 25 8 1.5674 -2.0711 1.2487 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.2489 -1.6318 -1.1527 30 1 1.4486 1.8609 -1.5725 31 1 2.2542 4.3865 -0.7701 32 1 2.5607 1.7887 -5.7421 33 1 3.1024 -0.5787 -5.4844 34 1 3.9356 0.3032 1.3077 35 1 3.9356 -1.1869 0.3336 36 1 5.0627 -1.4665 2.4594 37 1 3.9137 -3.3615 1.4806 38 1 3.8994 -3.3986 3.2609 39 1 1.6548 -2.3886 3.2898 40 1 1.6410 -3.8587 2.2849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159501669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = -31.885742 kcal Electronic energy + Delta-G solvation = -22077.870688 eV Core-core repulsion = 18891.162428 eV Total energy + Delta-G solvation = -3186.708260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91030 -40.04798 -37.17027 -35.90271 -35.56854 -33.10480 -32.20171 -30.69963 -29.21007 -27.79062 -27.50884 -24.96668 -23.85276 -22.82059 -22.03774 -20.99871 -19.63933 -18.03774 -17.75656 -17.12458 -17.06080 -16.15833 -15.96702 -15.74876 -15.69323 -15.36499 -15.25603 -15.13830 -14.60867 -14.41772 -14.27786 -13.85747 -13.42319 -13.12576 -12.92210 -12.79229 -12.67966 -12.50756 -12.38297 -11.92459 -11.88697 -11.73088 -11.54492 -11.22079 -10.71782 -10.63809 -9.86569 -9.77975 -9.56988 -8.65224 -8.15666 -6.49441 1.07246 1.17388 1.40880 1.54924 1.60991 2.21969 2.50318 2.76936 2.86027 3.05244 3.73300 3.83971 3.90175 4.03217 4.13741 4.27066 4.27667 4.38567 4.44229 4.55505 4.62721 4.73569 4.80549 4.88072 4.93530 4.95328 4.99946 5.07132 5.15578 5.27420 5.34255 5.40623 5.67357 5.77086 6.02756 6.11619 6.19959 6.26701 6.39688 6.65227 6.93460 6.95465 7.12997 7.92529 8.31920 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.005335 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.425890 B = 5247.314618 C = 6020.439418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.170 3.830 3 H 0.078 0.922 4 N -0.719 5.719 5 C 0.384 3.616 6 C -0.300 4.300 7 C 0.120 3.880 8 C -0.490 4.490 9 H 0.077 0.923 10 C 0.043 3.957 11 N -0.808 5.808 12 Si 0.981 3.019 13 H -0.260 1.260 14 H -0.262 1.262 15 H -0.264 1.264 16 C -0.325 4.325 17 C 0.130 3.870 18 N -0.637 5.637 19 C 0.103 3.897 20 H 0.086 0.914 21 C 0.032 3.968 22 N -0.687 5.687 23 C 0.018 3.982 24 C 0.057 3.943 25 O -0.392 6.392 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.394 0.606 30 H 0.124 0.876 31 H 0.290 0.710 32 H 0.105 0.895 33 H 0.151 0.849 34 H 0.079 0.921 35 H 0.027 0.973 36 H 0.354 0.646 37 H 0.031 0.969 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -6.963 11.191 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.063 3.937 3 H 0.095 0.905 4 N -0.353 5.353 5 C 0.155 3.845 6 C -0.327 4.327 7 C 0.112 3.888 8 C -0.521 4.521 9 H 0.095 0.905 10 C -0.175 4.175 11 N -0.433 5.433 12 Si 0.802 3.198 13 H -0.184 1.184 14 H -0.186 1.186 15 H -0.189 1.189 16 C -0.350 4.350 17 C -0.022 4.022 18 N -0.361 5.361 19 C 0.045 3.955 20 H 0.103 0.897 21 C -0.098 4.098 22 N -0.319 5.319 23 C -0.111 4.111 24 C -0.020 4.020 25 O -0.311 6.311 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.228 0.772 30 H 0.141 0.859 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.168 0.832 34 H 0.098 0.902 35 H 0.045 0.955 36 H 0.173 0.827 37 H 0.049 0.951 38 H 0.128 0.872 39 H 0.082 0.918 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.355 -7.512 11.905 14.081 hybrid contribution 0.517 1.034 -0.931 1.484 sum 0.162 -6.479 10.974 12.745 Atomic orbital electron populations 1.22076 0.95255 1.02182 1.01562 1.20854 0.94404 0.95732 0.82670 0.90453 1.44094 1.73747 1.11726 1.05761 1.18387 0.91079 0.88754 0.86330 1.21500 1.17577 0.92681 1.00919 1.18042 0.85707 0.93623 0.91435 1.19863 1.42783 0.93724 0.95711 0.90523 1.26736 0.92965 1.03889 0.93873 1.69841 1.30738 1.39109 1.03622 0.85179 0.78738 0.76231 0.79700 1.18412 1.18632 1.18913 1.21664 1.16179 0.97061 1.00145 1.21728 0.94845 0.91967 0.93688 1.66894 1.29009 1.40358 0.99854 1.22262 0.92418 0.83788 0.97079 0.89673 1.22431 0.96002 0.99438 0.91914 1.60598 1.16284 1.13600 1.41450 1.22703 0.96784 0.89487 1.02155 1.22880 0.92938 0.96978 0.89166 1.87993 1.72969 1.22742 1.47398 0.94566 0.91867 0.90425 0.77165 0.85865 0.89951 0.87639 0.83207 0.90208 0.95470 0.82723 0.95090 0.87202 0.91753 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.09 9.25 71.98 0.67 -4.42 16 2 C 0.17 6.00 2.10 44.99 0.09 6.09 16 3 H 0.08 3.12 6.46 -2.39 -0.02 3.10 16 4 N -0.72 -29.27 4.48 -324.71 -1.45 -30.73 16 5 C 0.38 19.01 7.63 132.90 1.01 20.03 16 6 C -0.30 -16.00 7.51 23.01 0.17 -15.83 16 7 C 0.12 6.67 5.61 -21.12 -0.12 6.55 16 8 C -0.49 -26.52 9.12 23.52 0.21 -26.30 16 9 H 0.08 4.02 7.90 -2.91 -0.02 4.00 16 10 C 0.04 2.11 5.20 85.29 0.44 2.55 16 11 N -0.81 -40.63 10.92 21.84 0.24 -40.39 16 12 Si 0.98 37.25 29.59 68.60 2.03 39.28 16 13 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 14 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 15 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 16 C -0.33 -16.69 9.85 22.60 0.22 -16.46 16 17 C 0.13 6.23 11.10 84.26 0.94 7.16 16 18 N -0.64 -31.82 10.37 -194.47 -2.02 -33.84 16 19 C 0.10 2.95 2.55 30.63 0.08 3.03 16 20 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 21 C 0.03 0.90 5.93 86.31 0.51 1.41 16 22 N -0.69 -15.11 6.92 -513.00 -3.55 -18.66 16 23 C 0.02 0.34 6.76 86.32 0.58 0.92 16 24 C 0.06 1.13 7.01 72.02 0.50 1.63 16 25 O -0.39 -10.76 9.31 -148.98 -1.39 -12.15 16 26 H 0.04 1.40 7.63 -2.39 -0.02 1.38 16 27 H 0.06 2.05 7.69 -2.39 -0.02 2.03 16 28 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.39 15.57 8.11 -92.71 -0.75 14.82 16 30 H 0.12 6.59 4.19 -2.91 -0.01 6.58 16 31 H 0.29 12.98 8.29 -92.71 -0.77 12.21 16 32 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 33 H 0.15 5.98 8.06 -2.91 -0.02 5.95 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.03 0.88 7.36 -2.39 -0.02 0.86 16 36 H 0.35 6.68 8.90 -89.70 -0.80 5.88 16 37 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -62.04 322.18 -1.30 -63.35 By element: Atomic # 1 Polarization: 47.26 SS G_CDS: -0.49 Total: 46.78 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 5.32 Total: -13.64 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -6.78 Total: -123.62 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.39 Total: -12.15 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Total: -62.04 -1.30 -63.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159501669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.461 kcal (2) G-P(sol) polarization free energy of solvation -62.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds