Wall clock time and date at job start Mon Mar 30 2020 02:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35615 * 117.00043 * 2 1 4 4 C 1.39161 * 120.50449 * 359.97438 * 3 2 1 5 5 C 1.38308 * 118.62854 * 180.02562 * 4 3 2 6 6 C 1.39948 * 119.59292 * 359.97438 * 5 4 3 7 7 N 1.38912 * 119.49515 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99544 * 0.02562 * 7 6 5 9 9 H 1.08998 * 110.29124 * 35.67382 * 8 7 6 10 10 C 1.54260 * 110.32477 * 273.54490 * 8 7 6 11 11 C 1.54383 * 105.06184 * 241.10625 * 10 8 7 12 12 N 1.48567 * 104.59398 * 23.85220 * 11 10 8 13 13 C 1.48560 * 104.22059 * 320.51845 * 12 11 10 14 14 H 1.09000 * 110.41240 * 280.70196 * 13 12 11 15 15 C 1.53004 * 110.40867 * 158.26137 * 13 12 11 16 16 N 1.31869 * 121.01010 * 359.72876 * 6 5 4 17 17 C 1.33821 * 121.46969 * 0.55968 * 16 6 5 18 18 C 1.40914 * 119.84899 * 179.70824 * 17 16 6 19 19 H 1.07993 * 120.00188 * 188.75932 * 18 17 16 20 20 C 1.40032 * 119.99703 * 8.77213 * 18 17 16 21 21 N 1.30774 * 119.99687 * 195.94420 * 20 18 17 22 22 Si 1.86800 * 120.00048 * 15.94002 * 20 18 17 23 23 H 1.48503 * 109.47381 * 270.00196 * 22 20 18 24 24 H 1.48499 * 109.47175 * 30.00638 * 22 20 18 25 25 H 1.48501 * 109.46779 * 150.00361 * 22 20 18 26 26 H 1.08990 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47216 * 300.00546 * 1 2 3 28 28 H 1.09006 * 109.46956 * 59.99977 * 1 2 3 29 29 H 1.07992 * 120.68466 * 359.97438 * 4 3 2 30 30 H 1.07991 * 120.20448 * 180.02562 * 5 4 3 31 31 H 0.96996 * 120.00423 * 180.02562 * 7 6 5 32 32 H 1.09000 * 110.32173 * 0.02562 * 10 8 7 33 33 H 1.09000 * 110.32380 * 122.11270 * 10 8 7 34 34 H 1.09002 * 110.40943 * 142.62966 * 11 10 8 35 35 H 1.08993 * 110.41141 * 264.95685 * 11 10 8 36 36 H 1.00900 * 110.99718 * 200.95601 * 12 11 10 37 37 H 1.09002 * 109.46962 * 304.82010 * 15 13 12 38 38 H 1.08999 * 109.47059 * 64.82620 * 15 13 12 39 39 H 1.09001 * 109.46962 * 184.82545 * 15 13 12 40 40 H 0.96999 * 120.00179 * 354.79595 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2971 2.3821 -0.0005 5 6 1.9650 3.5932 -0.0011 6 6 3.3644 3.6107 -0.0005 7 7 4.0331 4.8282 -0.0005 8 6 3.2736 6.0810 -0.0005 9 1 2.3675 5.9737 0.5957 10 6 2.9194 6.4928 -1.4443 11 6 3.6043 7.8609 -1.6507 12 7 4.7179 7.8742 -0.6674 13 6 4.1428 7.2349 0.5440 14 1 3.5278 7.9472 1.0941 15 6 5.2570 6.6876 1.4384 16 7 4.0578 2.4891 0.0059 17 6 3.4544 1.2946 0.0009 18 6 4.2291 0.1175 0.0018 19 1 3.7544 -0.8414 -0.1446 20 6 5.6144 0.1912 0.1927 21 7 6.3714 -0.8311 -0.1103 22 14 6.3808 1.7498 0.8802 23 1 6.7366 2.6611 -0.2371 24 1 5.4099 2.4241 1.7790 25 1 7.6054 1.4033 1.6454 26 1 -0.3633 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.2177 2.3480 -0.0014 30 1 1.4101 4.5196 -0.0011 31 1 5.0029 4.8490 -0.0005 32 1 3.3102 5.7626 -2.1529 33 1 1.8394 6.5877 -1.5567 34 1 3.9926 7.9423 -2.6660 35 1 2.9045 8.6711 -1.4461 36 1 5.0159 8.8181 -0.4714 37 1 5.8868 6.0107 0.8611 38 1 5.8604 7.5140 1.8140 39 1 4.8174 6.1481 2.2774 40 1 5.9679 -1.6658 -0.3956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162673626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:14 Heat of formation + Delta-G solvation = -1.661599 kcal Electronic energy + Delta-G solvation = -22076.815708 eV Core-core repulsion = 18891.418065 eV Total energy + Delta-G solvation = -3185.397643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.53997 -38.70107 -36.89533 -34.36791 -33.14962 -31.38834 -30.79886 -29.71752 -27.85687 -26.46147 -25.24988 -24.94596 -21.63359 -21.21813 -20.96917 -19.37979 -18.16993 -17.41033 -16.75243 -16.16573 -15.72949 -14.94230 -14.77120 -14.42162 -14.10259 -13.75612 -13.53959 -13.27762 -12.94817 -12.59122 -12.25493 -12.08624 -12.05942 -11.94740 -11.75595 -11.59922 -11.34901 -10.89003 -10.76836 -10.69916 -10.63507 -10.49830 -10.01720 -9.59207 -9.08738 -8.75945 -8.56220 -8.44056 -7.78834 -7.21509 -6.50767 -4.54332 2.65249 2.87651 3.58789 3.69923 3.89096 4.05219 4.13338 4.41017 4.52394 4.57667 4.67715 4.87778 5.09477 5.18080 5.32546 5.50479 5.57507 5.64472 5.69749 5.73650 5.78122 5.81877 5.84934 5.93437 5.97767 5.98841 6.20481 6.27472 6.34208 6.48508 6.55187 6.73323 7.10109 7.20864 7.27264 7.45222 7.58887 7.92888 8.10734 8.22621 8.50008 8.58795 8.92817 9.66999 10.05300 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.006833 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.792849 B = 4096.543818 C = 5442.012882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C -0.069 4.069 4 C -0.103 4.103 5 C -0.346 4.346 6 C 0.420 3.580 7 N -0.727 5.727 8 C 0.167 3.833 9 H 0.084 0.916 10 C -0.142 4.142 11 C 0.038 3.962 12 N -0.661 5.661 13 C 0.054 3.946 14 H 0.056 0.944 15 C -0.137 4.137 16 N -0.601 5.601 17 C 0.284 3.716 18 C -0.458 4.458 19 H 0.089 0.911 20 C 0.049 3.951 21 N -0.801 5.801 22 Si 1.144 2.856 23 H -0.286 1.286 24 H -0.278 1.278 25 H -0.330 1.330 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.398 0.602 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.334 0.666 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 14.053 0.703 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.224 6.224 3 C -0.116 4.116 4 C -0.127 4.127 5 C -0.372 4.372 6 C 0.185 3.815 7 N -0.365 5.365 8 C 0.059 3.941 9 H 0.102 0.898 10 C -0.182 4.182 11 C -0.092 4.092 12 N -0.290 5.290 13 C -0.056 4.056 14 H 0.074 0.926 15 C -0.195 4.195 16 N -0.330 5.330 17 C 0.158 3.842 18 C -0.490 4.490 19 H 0.107 0.893 20 C -0.174 4.174 21 N -0.422 5.422 22 Si 0.977 3.023 23 H -0.213 1.213 24 H -0.205 1.205 25 H -0.263 1.263 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.236 0.764 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.149 0.851 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.842 13.949 0.759 14.488 hybrid contribution -3.190 0.050 -0.287 3.204 sum -7.032 13.999 0.472 15.673 Atomic orbital electron populations 1.22712 0.81805 1.01763 0.99734 1.85931 1.18107 1.27611 1.90773 1.19690 0.92923 0.83348 1.15659 1.20743 0.97545 0.92217 1.02204 1.20190 0.92105 0.96567 1.28330 1.18049 0.88217 0.85086 0.90184 1.44385 1.08050 1.01027 1.83019 1.21362 0.94148 0.83567 0.95069 0.89816 1.22934 0.99982 0.96670 0.98617 1.22872 0.92133 0.96825 0.97327 1.63694 1.33641 1.23090 1.08560 1.22737 0.95733 0.95487 0.91627 0.92575 1.21647 0.98004 1.00913 0.98913 1.66383 1.36814 0.96822 1.32976 1.17660 0.86544 0.90141 0.89813 1.20631 0.94103 0.93688 1.40624 0.89257 1.27739 0.94351 1.04624 0.90648 1.70622 1.40049 1.03736 1.27841 0.82115 0.71706 0.71507 0.76964 1.21318 1.20487 1.26310 0.90006 0.94310 0.94381 0.87845 0.88265 0.76383 0.89995 0.91267 0.90313 0.94455 0.85125 0.91390 0.92810 0.91657 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.83 101.05 0.99 1.61 16 2 O -0.31 -7.27 9.63 -18.54 -0.18 -7.45 16 3 C -0.07 -1.71 6.74 -38.10 -0.26 -1.97 16 4 C -0.10 -2.25 9.12 -39.21 -0.36 -2.61 16 5 C -0.35 -7.34 9.24 -38.92 -0.36 -7.70 16 6 C 0.42 9.49 7.65 -155.25 -1.19 8.30 16 7 N -0.73 -13.54 4.62 -52.51 -0.24 -13.79 16 8 C 0.17 2.40 2.85 -66.54 -0.19 2.21 16 9 H 0.08 1.20 6.52 -51.93 -0.34 0.87 16 10 C -0.14 -1.87 6.78 -25.35 -0.17 -2.05 16 11 C 0.04 0.41 7.47 -2.18 -0.02 0.39 16 12 N -0.66 -7.47 7.28 -102.74 -0.75 -8.22 16 13 C 0.05 0.65 3.75 -66.07 -0.25 0.40 16 14 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 15 C -0.14 -1.71 8.84 37.16 0.33 -1.38 16 16 N -0.60 -15.55 5.05 -10.19 -0.05 -15.60 16 17 C 0.28 7.73 6.28 -84.85 -0.53 7.20 16 18 C -0.46 -13.01 9.29 -37.90 -0.35 -13.36 16 19 H 0.09 2.61 7.55 -52.49 -0.40 2.21 16 20 C 0.05 1.35 5.51 -17.33 -0.10 1.26 16 21 N -0.80 -22.29 13.65 55.55 0.76 -21.54 16 22 Si 1.14 28.52 25.93 -169.99 -4.41 24.11 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.96 6.54 56.52 0.37 -6.59 16 25 H -0.33 -8.08 7.11 56.52 0.40 -7.67 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 28 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.10 1.94 6.43 -52.49 -0.34 1.61 16 30 H 0.10 1.83 6.22 -52.49 -0.33 1.51 16 31 H 0.40 7.61 6.50 -40.82 -0.27 7.34 16 32 H 0.08 1.29 7.95 -51.93 -0.41 0.88 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.33 3.01 8.92 -39.29 -0.35 2.66 16 37 H 0.07 0.97 6.22 -51.93 -0.32 0.65 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.28 7.62 8.73 -40.82 -0.36 7.26 16 LS Contribution 317.69 15.07 4.79 4.79 Total: -1.00 -30.51 317.69 -8.22 -38.73 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.69 Total: 6.65 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.45 Total: -7.69 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.28 Total: -59.14 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.18 Total: -7.45 kcal Atomic # 14 Polarization: 28.52 SS G_CDS: -4.41 Total: 24.11 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.51 -8.22 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162673626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.072 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds