Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.03872 * 2 1 4 4 C 1.50821 * 109.05149 * 118.97588 * 2 1 3 5 5 N 1.47627 * 108.03310 * 215.61419 * 4 2 1 6 6 C 1.38828 * 110.99746 * 150.31455 * 5 4 2 7 7 C 1.39970 * 119.96920 * 217.05177 * 6 5 4 8 8 N 1.32122 * 120.31751 * 179.97438 * 7 6 5 9 9 C 1.31936 * 120.27454 * 359.97438 * 8 7 6 10 10 C 1.40686 * 119.93090 * 0.02562 * 9 8 7 11 11 C 1.41273 * 120.15461 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00064 * 8.65467 * 11 10 9 13 13 C 1.40055 * 119.99760 * 188.65283 * 11 10 9 14 14 N 1.30726 * 120.00081 * 8.50265 * 13 11 10 15 15 Si 1.86799 * 119.99669 * 188.50264 * 13 11 10 16 16 H 1.48493 * 109.47329 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46886 * 120.00298 * 15 13 11 18 18 H 1.48500 * 109.47016 * 239.99801 * 15 13 11 19 19 N 1.32239 * 119.96807 * 36.77443 * 6 5 4 20 20 C 1.39768 * 114.76912 * 277.17653 * 5 4 2 21 21 C 1.54432 * 111.76424 * 62.28285 * 20 5 4 22 22 C 1.50750 * 109.03046 * 282.61026 * 21 20 5 23 23 C 1.53814 * 109.05131 * 241.08485 * 2 1 3 24 24 H 1.09005 * 108.97958 * 77.93226 * 23 2 1 25 25 O 1.42894 * 108.97996 * 319.13754 * 23 2 1 26 26 H 1.08999 * 109.47076 * 301.02325 * 1 2 3 27 27 H 1.08998 * 109.47191 * 61.02169 * 1 2 3 28 28 H 1.08994 * 109.47279 * 181.02458 * 1 2 3 29 29 H 1.08996 * 109.74677 * 95.97937 * 4 2 1 30 30 H 1.08994 * 109.74840 * 335.25200 * 4 2 1 31 31 H 1.07999 * 119.83776 * 359.97438 * 7 6 5 32 32 H 1.07993 * 120.03516 * 179.97438 * 9 8 7 33 33 H 0.97009 * 120.00116 * 180.02562 * 14 13 11 34 34 H 1.09006 * 109.02465 * 182.86768 * 20 5 4 35 35 H 1.09000 * 109.02693 * 301.69141 * 20 5 4 36 36 H 1.09001 * 109.54711 * 162.74705 * 21 20 5 37 37 H 1.08994 * 109.62043 * 42.52342 * 21 20 5 38 38 H 1.08998 * 108.85548 * 332.20519 * 22 21 20 39 39 H 1.09001 * 108.86131 * 213.81465 * 22 21 20 40 40 H 0.96707 * 113.99469 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8856 1.0304 0.0000 4 6 2.0223 -0.6906 1.2472 5 7 3.2502 -0.0043 1.6952 6 6 3.3923 -0.0883 3.0736 7 6 3.9123 0.9957 3.7902 8 7 4.0500 0.9234 5.1023 9 6 3.6979 -0.1715 5.7487 10 6 3.1740 -1.2676 5.0394 11 6 2.7959 -2.4426 5.7267 12 1 2.7759 -2.4538 6.8064 13 6 2.4469 -3.5928 5.0079 14 7 2.6288 -3.6352 3.7140 15 14 1.7217 -5.0662 5.8980 16 1 1.6180 -4.7664 7.3486 17 1 0.3703 -5.3566 5.3551 18 1 2.5998 -6.2470 5.6976 19 7 3.0310 -1.1904 3.7090 20 6 4.4188 -0.4113 1.0454 21 6 4.3652 -0.1137 -0.4690 22 6 3.5020 -1.1495 -1.1433 23 6 2.0321 -0.7030 -1.2726 24 1 1.9441 -0.0167 -2.1149 25 8 1.2178 -1.8505 -1.5217 26 1 -0.3633 0.5296 0.8807 27 1 -0.3633 0.4979 -0.8990 28 1 -0.3633 -1.0274 0.0184 29 1 2.2435 -1.7349 1.0269 30 1 1.2619 -0.6309 2.0258 31 1 4.2024 1.8955 3.2682 32 1 3.8125 -0.2265 6.8211 33 1 2.3867 -4.4318 3.2160 34 1 5.2688 0.1141 1.4808 35 1 4.5522 -1.4831 1.1924 36 1 5.3724 -0.1522 -0.8841 37 1 3.9412 0.8769 -0.6326 38 1 3.5402 -2.0716 -0.5633 39 1 3.8995 -1.3453 -2.1391 40 1 1.4721 -2.3495 -2.3101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164229975.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = -4.245793 kcal Electronic energy + Delta-G solvation = -22581.030187 eV Core-core repulsion = 19395.520485 eV Total energy + Delta-G solvation = -3185.509702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.99051 -38.52441 -36.41630 -34.04443 -33.24161 -33.06516 -31.42921 -29.34013 -27.25885 -26.19448 -24.85504 -23.79316 -22.26424 -21.46727 -20.18838 -19.06643 -17.61195 -17.07725 -16.46703 -15.56028 -15.21667 -15.04373 -14.83089 -14.62419 -14.30534 -13.31095 -13.21035 -13.01542 -12.87043 -12.62189 -12.38999 -11.75721 -11.61692 -11.50310 -11.38934 -11.31959 -11.26128 -10.82443 -10.62616 -10.53032 -10.28251 -10.25260 -9.97879 -9.82763 -9.63172 -9.49474 -9.08129 -8.24969 -7.53712 -7.24943 -6.59380 -4.68752 2.48215 2.90846 3.01446 3.05769 3.17509 3.82735 4.38129 4.49312 4.61034 4.89223 4.93200 5.16027 5.29913 5.45512 5.65044 5.70308 5.77531 5.80190 5.89792 5.99444 6.07175 6.10373 6.15974 6.21790 6.25672 6.31955 6.43485 6.47920 6.55242 6.59022 6.66269 6.83882 6.95317 6.97889 7.18406 7.53780 7.77650 7.82547 8.00674 8.12400 8.46964 8.72118 9.25574 9.80455 10.09693 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.006829 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.089040 B = 4099.299524 C = 5107.615389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 H 0.087 0.913 4 C 0.092 3.908 5 N -0.493 5.493 6 C 0.278 3.722 7 C -0.100 4.100 8 N -0.424 5.424 9 C -0.077 4.077 10 C 0.224 3.776 11 C -0.418 4.418 12 H 0.091 0.909 13 C 0.071 3.929 14 N -0.714 5.714 15 Si 0.910 3.090 16 H -0.258 1.258 17 H -0.271 1.271 18 H -0.273 1.273 19 N -0.481 5.481 20 C 0.082 3.918 21 C -0.111 4.111 22 C -0.155 4.155 23 C 0.114 3.886 24 H 0.045 0.955 25 O -0.561 6.561 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.276 0.724 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 1.233 -10.480 10.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 H 0.105 0.895 4 C -0.035 4.035 5 N -0.215 5.215 6 C 0.038 3.962 7 C -0.260 4.260 8 N -0.136 5.136 9 C -0.246 4.246 10 C 0.096 3.904 11 C -0.450 4.450 12 H 0.109 0.891 13 C -0.155 4.155 14 N -0.334 5.334 15 Si 0.733 3.267 16 H -0.181 1.181 17 H -0.196 1.196 18 H -0.198 1.198 19 N -0.202 5.202 20 C -0.047 4.047 21 C -0.149 4.149 22 C -0.192 4.192 23 C 0.055 3.945 24 H 0.063 0.937 25 O -0.366 6.366 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.148 1.757 -10.282 10.494 hybrid contribution 0.150 -1.702 -0.093 1.711 sum -0.998 0.055 -10.375 10.423 Atomic orbital electron populations 1.21658 0.94787 1.02285 1.00525 1.21132 0.96103 0.99816 0.93174 0.89469 1.21588 0.90625 0.96201 0.95042 1.56724 1.04078 1.58561 1.02107 1.20655 0.94900 0.91147 0.89468 1.22203 1.14432 0.99191 0.90216 1.67673 1.11646 1.25505 1.08778 1.23095 1.09408 0.92614 0.99514 1.19220 0.89634 0.93282 0.88233 1.19636 1.37024 0.93706 0.94635 0.89131 1.26083 0.94332 1.00283 0.94824 1.69996 1.29092 1.27066 1.07265 0.86228 0.79290 0.80273 0.80874 1.18136 1.19610 1.19801 1.69401 1.20990 1.20530 1.09261 1.20883 0.91878 0.98682 0.93220 1.21381 0.99156 0.99526 0.94872 1.22190 0.95602 1.00765 1.00682 1.22289 0.88620 0.86569 0.97013 0.93663 1.86615 1.58028 1.42114 1.49842 0.93035 0.93530 0.91858 0.92442 0.90731 0.85378 0.85010 0.91251 0.91504 0.95158 0.91540 0.90825 0.90828 0.92609 0.78557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.45 37.16 0.31 -1.70 16 2 C -0.08 -1.30 2.16 -91.29 -0.20 -1.50 16 3 H 0.09 1.34 7.26 -51.93 -0.38 0.96 16 4 C 0.09 1.81 4.30 -4.52 -0.02 1.79 16 5 N -0.49 -9.92 3.91 -178.13 -0.70 -10.61 16 6 C 0.28 6.68 5.32 -155.01 -0.83 5.85 16 7 C -0.10 -2.39 11.08 -16.78 -0.19 -2.57 16 8 N -0.42 -10.67 10.47 -12.11 -0.13 -10.79 16 9 C -0.08 -1.96 10.97 -16.58 -0.18 -2.14 16 10 C 0.22 6.02 6.50 -84.83 -0.55 5.47 16 11 C -0.42 -10.76 9.14 -37.75 -0.35 -11.11 16 12 H 0.09 2.16 7.86 -52.49 -0.41 1.75 16 13 C 0.07 1.75 5.46 -17.34 -0.09 1.65 16 14 N -0.71 -18.24 11.63 55.55 0.65 -17.59 16 15 Si 0.91 18.03 29.57 -169.99 -5.03 13.01 16 16 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 17 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 19 N -0.48 -12.76 7.15 -10.14 -0.07 -12.84 16 20 C 0.08 1.48 4.87 -6.75 -0.03 1.45 16 21 C -0.11 -1.51 5.64 -27.11 -0.15 -1.67 16 22 C -0.15 -2.02 4.90 -27.25 -0.13 -2.15 16 23 C 0.11 1.51 3.15 -25.70 -0.08 1.43 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 O -0.56 -7.57 11.89 -35.23 -0.42 -7.99 16 26 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.02 7.38 -51.93 -0.38 0.63 16 29 H 0.06 1.26 6.66 -51.93 -0.35 0.91 16 30 H 0.07 1.68 7.13 -51.93 -0.37 1.31 16 31 H 0.13 2.78 8.06 -52.49 -0.42 2.35 16 32 H 0.13 3.04 8.06 -52.49 -0.42 2.62 16 33 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 34 H 0.07 1.21 7.90 -51.93 -0.41 0.80 16 35 H 0.03 0.63 7.55 -51.93 -0.39 0.23 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.97 7.11 -51.93 -0.37 0.60 16 38 H 0.07 1.15 6.57 -51.93 -0.34 0.81 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.37 3.34 9.05 45.56 0.41 3.76 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -29.20 317.43 -8.48 -37.67 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.08 Total: 9.55 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.49 Total: -5.19 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.25 Total: -51.83 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.42 Total: -7.99 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.20 -8.48 -37.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164229975.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.428 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds