Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.03872 * 2 1 4 4 C 1.50821 * 109.05149 * 118.97588 * 2 1 3 5 5 N 1.47627 * 108.03310 * 215.61419 * 4 2 1 6 6 C 1.38828 * 110.99746 * 150.31455 * 5 4 2 7 7 C 1.39970 * 119.96920 * 217.05177 * 6 5 4 8 8 N 1.32122 * 120.31751 * 179.97438 * 7 6 5 9 9 C 1.31936 * 120.27454 * 359.97438 * 8 7 6 10 10 C 1.40686 * 119.93090 * 0.02562 * 9 8 7 11 11 C 1.41273 * 120.15461 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00064 * 8.65467 * 11 10 9 13 13 C 1.40055 * 119.99760 * 188.65283 * 11 10 9 14 14 N 1.30726 * 120.00081 * 8.50265 * 13 11 10 15 15 Si 1.86799 * 119.99669 * 188.50264 * 13 11 10 16 16 H 1.48493 * 109.47329 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46886 * 120.00298 * 15 13 11 18 18 H 1.48500 * 109.47016 * 239.99801 * 15 13 11 19 19 N 1.32239 * 119.96807 * 36.77443 * 6 5 4 20 20 C 1.39768 * 114.76912 * 277.17653 * 5 4 2 21 21 C 1.54432 * 111.76424 * 62.28285 * 20 5 4 22 22 C 1.50750 * 109.03046 * 282.61026 * 21 20 5 23 23 C 1.53814 * 109.05131 * 241.08485 * 2 1 3 24 24 H 1.09005 * 108.97958 * 77.93226 * 23 2 1 25 25 O 1.42894 * 108.97996 * 319.13754 * 23 2 1 26 26 H 1.08999 * 109.47076 * 301.02325 * 1 2 3 27 27 H 1.08998 * 109.47191 * 61.02169 * 1 2 3 28 28 H 1.08994 * 109.47279 * 181.02458 * 1 2 3 29 29 H 1.08996 * 109.74677 * 95.97937 * 4 2 1 30 30 H 1.08994 * 109.74840 * 335.25200 * 4 2 1 31 31 H 1.07999 * 119.83776 * 359.97438 * 7 6 5 32 32 H 1.07993 * 120.03516 * 179.97438 * 9 8 7 33 33 H 0.97009 * 120.00116 * 180.02562 * 14 13 11 34 34 H 1.09006 * 109.02465 * 182.86768 * 20 5 4 35 35 H 1.09000 * 109.02693 * 301.69141 * 20 5 4 36 36 H 1.09001 * 109.54711 * 162.74705 * 21 20 5 37 37 H 1.08994 * 109.62043 * 42.52342 * 21 20 5 38 38 H 1.08998 * 108.85548 * 332.20519 * 22 21 20 39 39 H 1.09001 * 108.86131 * 213.81465 * 22 21 20 40 40 H 0.96707 * 113.99469 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8856 1.0304 0.0000 4 6 2.0223 -0.6906 1.2472 5 7 3.2502 -0.0043 1.6952 6 6 3.3923 -0.0883 3.0736 7 6 3.9123 0.9957 3.7902 8 7 4.0500 0.9234 5.1023 9 6 3.6979 -0.1715 5.7487 10 6 3.1740 -1.2676 5.0394 11 6 2.7959 -2.4426 5.7267 12 1 2.7759 -2.4538 6.8064 13 6 2.4469 -3.5928 5.0079 14 7 2.6288 -3.6352 3.7140 15 14 1.7217 -5.0662 5.8980 16 1 1.6180 -4.7664 7.3486 17 1 0.3703 -5.3566 5.3551 18 1 2.5998 -6.2470 5.6976 19 7 3.0310 -1.1904 3.7090 20 6 4.4188 -0.4113 1.0454 21 6 4.3652 -0.1137 -0.4690 22 6 3.5020 -1.1495 -1.1433 23 6 2.0321 -0.7030 -1.2726 24 1 1.9441 -0.0167 -2.1149 25 8 1.2178 -1.8505 -1.5217 26 1 -0.3633 0.5296 0.8807 27 1 -0.3633 0.4979 -0.8990 28 1 -0.3633 -1.0274 0.0184 29 1 2.2435 -1.7349 1.0269 30 1 1.2619 -0.6309 2.0258 31 1 4.2024 1.8955 3.2682 32 1 3.8125 -0.2265 6.8211 33 1 2.3867 -4.4318 3.2160 34 1 5.2688 0.1141 1.4808 35 1 4.5522 -1.4831 1.1924 36 1 5.3724 -0.1522 -0.8841 37 1 3.9412 0.8769 -0.6326 38 1 3.5402 -2.0716 -0.5633 39 1 3.8995 -1.3453 -2.1391 40 1 1.4721 -2.3495 -2.3101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164229975.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = -24.693694 kcal Electronic energy + Delta-G solvation = -22581.916875 eV Core-core repulsion = 19395.520485 eV Total energy + Delta-G solvation = -3186.396389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62899 -40.11173 -37.76711 -35.94943 -34.63346 -34.35548 -33.27952 -31.14720 -28.59203 -28.07091 -26.38126 -25.13371 -24.13032 -23.07193 -21.72837 -20.31618 -19.48787 -18.32584 -18.06319 -17.25042 -17.02884 -16.77013 -16.37808 -16.12376 -15.57074 -14.90852 -14.68348 -14.37287 -14.20826 -14.04786 -13.83373 -13.42794 -13.36511 -13.04216 -12.98992 -12.77446 -12.57183 -12.38804 -12.08019 -11.98966 -11.78479 -11.66028 -11.52891 -11.46245 -11.19054 -10.93998 -10.67068 -10.07667 -9.46476 -9.08855 -8.48447 -6.67599 0.56760 1.04286 1.36550 1.47908 1.52978 2.14415 2.69914 2.84821 3.45714 3.68197 3.74067 3.79234 3.99157 4.06795 4.11953 4.14327 4.32736 4.44380 4.47951 4.52995 4.61978 4.67080 4.77409 4.83394 4.95163 4.97996 4.99371 5.02324 5.08336 5.17042 5.19437 5.27341 5.33453 5.41757 5.56345 5.66653 5.97075 6.22375 6.32611 6.55981 6.78613 7.00089 7.29000 7.84889 8.24414 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.006829 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.089040 B = 4099.299524 C = 5107.615389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.082 4.082 3 H 0.097 0.903 4 C 0.108 3.892 5 N -0.480 5.480 6 C 0.269 3.731 7 C -0.107 4.107 8 N -0.431 5.431 9 C -0.096 4.096 10 C 0.192 3.808 11 C -0.441 4.441 12 H 0.103 0.897 13 C 0.027 3.973 14 N -0.748 5.748 15 Si 0.990 3.010 16 H -0.247 1.247 17 H -0.269 1.269 18 H -0.264 1.264 19 N -0.506 5.506 20 C 0.081 3.919 21 C -0.099 4.099 22 C -0.151 4.151 23 C 0.118 3.882 24 H 0.081 0.919 25 O -0.581 6.581 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.027 0.973 30 H 0.035 0.965 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.282 0.718 34 H 0.064 0.936 35 H -0.006 1.006 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.092 0.908 40 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.925 1.372 -12.289 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.101 4.101 3 H 0.115 0.885 4 C -0.018 4.018 5 N -0.202 5.202 6 C 0.029 3.971 7 C -0.268 4.268 8 N -0.143 5.143 9 C -0.264 4.264 10 C 0.065 3.935 11 C -0.473 4.473 12 H 0.121 0.879 13 C -0.196 4.196 14 N -0.368 5.368 15 Si 0.810 3.190 16 H -0.170 1.170 17 H -0.194 1.194 18 H -0.189 1.189 19 N -0.227 5.227 20 C -0.048 4.048 21 C -0.137 4.137 22 C -0.188 4.188 23 C 0.060 3.940 24 H 0.098 0.902 25 O -0.389 6.389 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.013 0.987 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.261 1.905 -12.100 12.313 hybrid contribution 0.218 -1.726 0.434 1.794 sum -1.043 0.178 -11.665 11.713 Atomic orbital electron populations 1.21594 0.94261 1.01376 1.01427 1.21117 0.96530 1.00072 0.92361 0.88484 1.21400 0.89388 0.95196 0.95845 1.56960 1.04962 1.58035 1.00208 1.21143 0.93940 0.90640 0.91350 1.22597 1.14101 0.99949 0.90128 1.67686 1.11749 1.25428 1.09389 1.23309 1.10115 0.92613 1.00348 1.19696 0.90500 0.94458 0.88878 1.20056 1.37517 0.94220 0.95464 0.87926 1.27058 0.94114 1.03026 0.95447 1.70096 1.29575 1.28224 1.08951 0.85029 0.78181 0.76016 0.79797 1.17030 1.19409 1.18875 1.69425 1.21985 1.21798 1.09526 1.21007 0.90789 0.96321 0.96666 1.21359 1.01180 1.00331 0.90796 1.22160 0.95782 0.98906 1.01976 1.22247 0.88273 0.87082 0.96435 0.90166 1.86573 1.58319 1.42603 1.51421 0.94041 0.90726 0.93589 0.95438 0.94672 0.83008 0.83406 0.90711 0.91808 0.98737 0.88804 0.89336 0.94214 0.88927 0.76215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 8.45 71.98 0.61 -3.12 16 2 C -0.08 -2.47 2.16 -11.23 -0.02 -2.49 16 3 H 0.10 2.76 7.26 -2.38 -0.02 2.74 16 4 C 0.11 4.42 4.30 85.46 0.37 4.79 16 5 N -0.48 -19.70 3.91 -717.46 -2.80 -22.50 16 6 C 0.27 13.40 5.32 133.38 0.71 14.10 16 7 C -0.11 -5.18 11.08 85.07 0.94 -4.24 16 8 N -0.43 -22.01 10.47 -192.23 -2.01 -24.02 16 9 C -0.10 -5.01 10.97 85.28 0.94 -4.07 16 10 C 0.19 10.73 6.50 40.15 0.26 10.99 16 11 C -0.44 -23.33 9.14 23.46 0.21 -23.12 16 12 H 0.10 4.97 7.86 -2.91 -0.02 4.95 16 13 C 0.03 1.34 5.46 85.30 0.47 1.81 16 14 N -0.75 -39.64 11.63 21.84 0.25 -39.39 16 15 Si 0.99 37.17 29.57 68.60 2.03 39.20 16 16 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 17 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 18 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 19 N -0.51 -28.14 7.15 -185.98 -1.33 -29.47 16 20 C 0.08 2.93 4.87 88.07 0.43 3.36 16 21 C -0.10 -2.44 5.64 30.35 0.17 -2.27 16 22 C -0.15 -3.57 4.90 30.26 0.15 -3.42 16 23 C 0.12 2.82 3.15 31.26 0.10 2.92 16 24 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 25 O -0.58 -14.60 11.89 -148.98 -1.77 -16.37 16 26 H 0.04 1.25 8.09 -2.39 -0.02 1.23 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.47 7.38 -2.39 -0.02 1.46 16 29 H 0.03 1.27 6.66 -2.39 -0.02 1.25 16 30 H 0.03 1.68 7.13 -2.39 -0.02 1.66 16 31 H 0.15 6.49 8.06 -2.91 -0.02 6.47 16 32 H 0.15 6.98 8.06 -2.91 -0.02 6.96 16 33 H 0.28 13.66 8.29 -92.70 -0.77 12.89 16 34 H 0.06 2.32 7.90 -2.38 -0.02 2.31 16 35 H -0.01 -0.24 7.55 -2.39 -0.02 -0.26 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 1.99 7.11 -2.39 -0.02 1.97 16 38 H 0.04 1.23 6.57 -2.39 -0.02 1.21 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.39 6.05 9.05 -74.05 -0.67 5.38 16 Total: -1.00 -66.77 317.43 0.07 -66.70 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.38 Total: 30.62 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 5.33 Total: -4.77 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -5.89 Total: -115.38 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -1.77 Total: -16.37 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -66.77 0.07 -66.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164229975.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.006 kcal (2) G-P(sol) polarization free energy of solvation -66.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds