Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 108.98136 * 2 1 4 4 C 1.45864 * 109.05697 * 118.95400 * 2 1 3 5 5 N 1.47800 * 112.91688 * 181.87522 * 4 2 1 6 6 C 1.38820 * 111.00018 * 153.87110 * 5 4 2 7 7 C 1.39963 * 119.96837 * 216.71798 * 6 5 4 8 8 N 1.32132 * 120.32033 * 179.97438 * 7 6 5 9 9 C 1.31928 * 120.26665 * 359.97438 * 8 7 6 10 10 C 1.40684 * 119.93850 * 0.02562 * 9 8 7 11 11 C 1.41266 * 120.15745 * 180.02562 * 10 9 8 12 12 H 1.08009 * 120.00267 * 353.55172 * 11 10 9 13 13 C 1.40056 * 120.00200 * 173.55262 * 11 10 9 14 14 N 1.30734 * 119.99822 * 6.67361 * 13 11 10 15 15 Si 1.86803 * 120.00171 * 186.67859 * 13 11 10 16 16 H 1.48497 * 109.47267 * 94.96982 * 15 13 11 17 17 H 1.48506 * 109.46719 * 214.97235 * 15 13 11 18 18 H 1.48503 * 109.47111 * 334.96884 * 15 13 11 19 19 N 1.32238 * 119.97418 * 36.68731 * 6 5 4 20 20 C 1.44273 * 109.45848 * 276.73776 * 5 4 2 21 21 C 1.54074 * 111.98175 * 96.43923 * 20 5 4 22 22 C 1.54294 * 112.28410 * 318.91538 * 21 20 5 23 23 C 1.50458 * 113.03292 * 318.29676 * 22 21 20 24 24 H 1.08999 * 109.58037 * 332.35031 * 23 22 21 25 25 O 1.42899 * 109.67792 * 212.03048 * 23 22 21 26 26 H 1.09001 * 109.47128 * 301.04429 * 1 2 3 27 27 H 1.08994 * 109.47048 * 61.04658 * 1 2 3 28 28 H 1.08999 * 109.46824 * 181.04611 * 1 2 3 29 29 H 1.08998 * 108.79260 * 60.98099 * 4 2 1 30 30 H 1.09001 * 108.79236 * 302.76081 * 4 2 1 31 31 H 1.08000 * 119.84490 * 0.25387 * 7 6 5 32 32 H 1.08002 * 120.03226 * 179.97438 * 9 8 7 33 33 H 0.97000 * 119.99474 * 179.97438 * 14 13 11 34 34 H 1.09007 * 108.97820 * 217.08024 * 20 5 4 35 35 H 1.09002 * 108.98377 * 335.79578 * 20 5 4 36 36 H 1.08997 * 108.91926 * 198.18805 * 21 20 5 37 37 H 1.09002 * 108.91510 * 79.63704 * 21 20 5 38 38 H 1.09000 * 108.76745 * 197.38536 * 22 21 20 39 39 H 1.09001 * 108.77498 * 79.21952 * 22 21 20 40 40 H 0.96703 * 114.00118 * 60.57341 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8846 1.0307 0.0000 4 6 2.0063 -0.6674 1.2064 5 7 3.4803 -0.6767 1.3152 6 6 3.8807 -0.7586 2.6419 7 6 5.0142 -0.0608 3.0744 8 7 5.4013 -0.1334 4.3357 9 6 4.7219 -0.8642 5.1987 10 6 3.5808 -1.5702 4.7759 11 6 2.8495 -2.3537 5.6962 12 1 3.2223 -2.4965 6.6999 13 6 1.6411 -2.9454 5.3073 14 7 1.2544 -2.8829 4.0601 15 14 0.5820 -3.8238 6.5707 16 1 -0.4503 -2.8895 7.0869 17 1 -0.0802 -4.9915 5.9355 18 1 1.4347 -4.2890 7.6941 19 7 3.1904 -1.4953 3.4960 20 6 4.0121 -1.7754 0.5460 21 6 4.4627 -1.3310 -0.8588 22 6 3.4751 -0.3355 -1.5024 23 6 2.0345 -0.7071 -1.2778 24 1 1.9507 -1.7868 -1.1549 25 8 1.2500 -0.2903 -2.3970 26 1 -0.3633 0.5300 0.8805 27 1 -0.3633 0.4975 -0.8992 28 1 -0.3633 -1.0275 0.0188 29 1 1.6478 -1.6968 1.2030 30 1 1.5932 -0.1571 2.0764 31 1 5.5728 0.5435 2.3750 32 1 5.0418 -0.9212 6.2287 33 1 0.4177 -3.2931 3.7907 34 1 4.8663 -2.1979 1.0751 35 1 3.2442 -2.5425 0.4457 36 1 4.5455 -2.2100 -1.4979 37 1 5.4419 -0.8582 -0.7826 38 1 3.6644 -0.2979 -2.5752 39 1 3.6516 0.6548 -1.0826 40 1 1.5126 -0.6962 -3.2345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164229976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = -22.953733 kcal Electronic energy + Delta-G solvation = -22501.119717 eV Core-core repulsion = 19314.798777 eV Total energy + Delta-G solvation = -3186.320939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55646 -40.13006 -37.66565 -35.94734 -34.84354 -34.37053 -33.17737 -31.08504 -28.63633 -28.08077 -26.30045 -25.30373 -24.13761 -23.00668 -21.15954 -20.86854 -19.51498 -18.16250 -18.12013 -17.12214 -17.02712 -16.76043 -16.68180 -15.85134 -15.41307 -14.89960 -14.79947 -14.44761 -14.32121 -14.06691 -13.46619 -13.40347 -13.37607 -13.24199 -13.04274 -12.68166 -12.49670 -12.31016 -12.12317 -11.98441 -11.72833 -11.69950 -11.54850 -11.48010 -11.17450 -10.90368 -10.71541 -10.04137 -9.54207 -9.20798 -8.40523 -6.67972 0.55333 1.04919 1.38974 1.50495 1.53270 2.16108 2.72036 2.78342 3.27116 3.68932 3.74509 3.90059 4.00125 4.08868 4.14437 4.26090 4.29498 4.35450 4.43319 4.51905 4.56754 4.68571 4.78725 4.83082 4.88616 4.95959 5.02676 5.08041 5.11709 5.19679 5.24267 5.30701 5.38317 5.39686 5.47020 5.64808 5.93832 6.09282 6.21797 6.54744 6.79246 7.00116 7.28736 7.84704 8.26430 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017879 B = 0.006333 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.717318 B = 4420.527541 C = 5492.872069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.075 4.075 3 H 0.070 0.930 4 C 0.097 3.903 5 N -0.463 5.463 6 C 0.266 3.734 7 C -0.105 4.105 8 N -0.433 5.433 9 C -0.092 4.092 10 C 0.188 3.812 11 C -0.437 4.437 12 H 0.102 0.898 13 C 0.025 3.975 14 N -0.739 5.739 15 Si 0.991 3.009 16 H -0.265 1.265 17 H -0.268 1.268 18 H -0.251 1.251 19 N -0.500 5.500 20 C 0.066 3.934 21 C -0.096 4.096 22 C -0.134 4.134 23 C 0.124 3.876 24 H 0.047 0.953 25 O -0.573 6.573 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.282 0.718 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 -0.396 -10.836 11.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.095 4.095 3 H 0.088 0.912 4 C -0.030 4.030 5 N -0.184 5.184 6 C 0.026 3.974 7 C -0.266 4.266 8 N -0.145 5.145 9 C -0.260 4.260 10 C 0.061 3.939 11 C -0.468 4.468 12 H 0.120 0.880 13 C -0.199 4.199 14 N -0.360 5.360 15 Si 0.810 3.190 16 H -0.190 1.190 17 H -0.193 1.193 18 H -0.174 1.174 19 N -0.222 5.222 20 C -0.062 4.062 21 C -0.134 4.134 22 C -0.172 4.172 23 C 0.065 3.935 24 H 0.065 0.935 25 O -0.382 6.382 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.160 0.337 -10.761 10.981 hybrid contribution -0.321 -1.314 0.794 1.569 sum -2.480 -0.978 -9.967 10.318 Atomic orbital electron populations 1.21601 0.93813 1.01602 1.01687 1.20094 0.96675 0.99965 0.92716 0.91192 1.20564 0.85956 0.99527 0.97002 1.59654 1.10502 1.43264 1.04974 1.21204 0.92629 0.92281 0.91240 1.22543 1.01233 1.09373 0.93440 1.67705 1.29074 1.14795 1.02896 1.23337 0.98742 1.04306 0.99635 1.19698 0.91338 0.92526 0.90358 1.20055 1.03907 1.24318 0.98532 0.88044 1.27039 0.99037 0.95847 0.97932 1.70164 1.18880 1.28740 1.18211 0.85053 0.77885 0.77815 0.78210 1.18995 1.19294 1.17412 1.69555 1.31045 1.18617 1.02960 1.21906 0.98416 0.90647 0.95259 1.21862 0.99128 0.99768 0.92659 1.21894 0.93815 1.00044 1.01446 1.21286 0.89971 0.96504 0.85730 0.93473 1.86461 1.60228 1.72466 1.19018 0.93799 0.90631 0.93312 0.94940 0.94343 0.83400 0.83403 0.90712 0.94062 0.94611 0.89726 0.91098 0.89292 0.92235 0.75769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.76 71.98 0.63 -3.19 16 2 C -0.08 -2.39 2.33 -12.47 -0.03 -2.42 16 3 H 0.07 2.30 7.59 -2.39 -0.02 2.28 16 4 C 0.10 3.83 3.53 83.94 0.30 4.13 16 5 N -0.46 -18.60 4.20 -716.08 -3.01 -21.61 16 6 C 0.27 12.95 5.10 133.38 0.68 13.63 16 7 C -0.11 -5.08 11.17 85.07 0.95 -4.13 16 8 N -0.43 -21.88 10.47 -192.22 -2.01 -23.90 16 9 C -0.09 -4.70 10.97 85.28 0.94 -3.76 16 10 C 0.19 10.22 6.54 40.15 0.26 10.49 16 11 C -0.44 -22.40 9.15 23.46 0.21 -22.19 16 12 H 0.10 4.78 7.86 -2.91 -0.02 4.75 16 13 C 0.03 1.21 5.49 85.30 0.47 1.68 16 14 N -0.74 -37.26 11.51 21.84 0.25 -37.01 16 15 Si 0.99 35.82 29.57 68.60 2.03 37.85 16 16 H -0.27 -9.42 7.11 99.48 0.71 -8.72 16 17 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 18 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 19 N -0.50 -26.91 7.05 -186.01 -1.31 -28.22 16 20 C 0.07 2.30 5.12 87.16 0.45 2.75 16 21 C -0.10 -2.38 6.15 31.40 0.19 -2.19 16 22 C -0.13 -3.10 5.16 30.21 0.16 -2.94 16 23 C 0.12 3.17 2.78 30.28 0.08 3.25 16 24 H 0.05 1.26 7.15 -2.39 -0.02 1.25 16 25 O -0.57 -12.62 11.89 -148.98 -1.77 -14.39 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 2.05 7.26 -2.39 -0.02 2.03 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.03 1.40 7.24 -2.39 -0.02 1.39 16 30 H 0.04 1.78 7.58 -2.39 -0.02 1.76 16 31 H 0.15 6.39 8.06 -2.91 -0.02 6.37 16 32 H 0.15 6.84 8.06 -2.91 -0.02 6.81 16 33 H 0.28 12.89 8.29 -92.71 -0.77 12.12 16 34 H 0.04 1.60 7.56 -2.38 -0.02 1.58 16 35 H 0.04 1.32 6.51 -2.39 -0.02 1.30 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.51 7.87 -2.39 -0.02 1.49 16 39 H 0.06 1.59 7.38 -2.39 -0.02 1.57 16 40 H 0.39 4.87 8.95 -74.06 -0.66 4.21 16 Total: -1.00 -62.30 318.17 -0.15 -62.45 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.38 Total: 29.72 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 5.29 Total: -4.90 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -6.08 Total: -110.73 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -1.77 Total: -14.39 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Total: -62.30 -0.15 -62.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164229976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.499 kcal (2) G-P(sol) polarization free energy of solvation -62.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds