Wall clock time and date at job start Mon Mar 30 2020 02:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.54597 * 2 1 4 4 C 1.54426 * 109.54701 * 239.81387 * 2 1 3 5 5 N 1.39782 * 111.76745 * 162.63396 * 4 2 1 6 6 C 1.38824 * 110.99752 * 189.12517 * 5 4 2 7 7 C 1.39967 * 119.97464 * 0.02562 * 6 5 4 8 8 N 1.32124 * 120.31906 * 180.25492 * 7 6 5 9 9 C 1.31930 * 120.27485 * 359.48236 * 8 7 6 10 10 C 1.40689 * 119.93169 * 0.48819 * 9 8 7 11 11 C 1.41269 * 120.15710 * 179.74440 * 10 9 8 12 12 H 1.08008 * 119.99761 * 353.63382 * 11 10 9 13 13 C 1.40055 * 120.00106 * 173.63747 * 11 10 9 14 14 N 1.30727 * 119.99564 * 6.18355 * 13 11 10 15 15 Si 1.86800 * 119.99938 * 186.18692 * 13 11 10 16 16 H 1.48504 * 109.47141 * 60.00065 * 15 13 11 17 17 H 1.48499 * 109.46973 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47209 * 299.99650 * 15 13 11 19 19 N 1.32245 * 119.96796 * 179.97438 * 6 5 4 20 20 C 1.47636 * 114.75617 * 62.27781 * 5 4 2 21 21 C 1.50817 * 108.05214 * 277.19683 * 20 5 4 22 22 C 1.53814 * 111.62066 * 95.05926 * 21 20 5 23 23 C 1.50755 * 109.61658 * 120.21973 * 2 1 3 24 24 H 1.09000 * 108.85115 * 92.22849 * 23 2 1 25 25 O 1.42893 * 108.85804 * 333.74002 * 23 2 1 26 26 H 1.09003 * 109.46694 * 180.18418 * 1 2 3 27 27 H 1.08994 * 109.47026 * 300.18437 * 1 2 3 28 28 H 1.08996 * 109.46782 * 60.18933 * 1 2 3 29 29 H 1.09000 * 109.01905 * 42.04906 * 4 2 1 30 30 H 1.09000 * 108.96459 * 283.18305 * 4 2 1 31 31 H 1.07996 * 119.83460 * 359.97305 * 7 6 5 32 32 H 1.07992 * 120.03500 * 180.25763 * 9 8 7 33 33 H 0.97007 * 119.99816 * 180.02562 * 14 13 11 34 34 H 1.08998 * 109.74526 * 36.83938 * 20 5 4 35 35 H 1.09002 * 109.74277 * 157.56001 * 20 5 4 36 36 H 1.08997 * 109.04994 * 334.50598 * 21 20 5 37 37 H 1.08997 * 108.99102 * 215.56932 * 21 20 5 38 38 H 1.09002 * 108.98270 * 198.40395 * 22 21 20 39 39 H 1.08997 * 108.98598 * 79.68556 * 22 21 20 40 40 H 0.96702 * 114.00162 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0467 -0.7317 -1.2579 5 7 3.3877 -0.4340 -1.5167 6 6 3.7780 -0.9305 -2.7530 7 6 2.8593 -1.6232 -3.5500 8 7 3.2247 -2.1030 -4.7255 9 6 4.4565 -1.9245 -5.1630 10 6 5.3888 -1.2294 -4.3712 11 6 6.7105 -1.0401 -4.8327 12 1 7.0370 -1.5158 -5.7458 13 6 7.5975 -0.2358 -4.1061 14 7 7.2432 0.2411 -2.9417 15 14 9.2868 0.1554 -4.8011 16 1 9.1367 0.8662 -6.0963 17 1 10.0270 1.0187 -3.8461 18 1 10.0392 -1.1071 -5.0135 19 7 5.0172 -0.7477 -3.1770 20 6 4.3289 -0.8506 -0.4582 21 6 4.3324 0.2144 0.6097 22 6 3.3605 -0.1255 1.7523 23 6 2.0362 -0.7147 1.2271 24 1 2.1922 -1.7656 0.9833 25 8 1.0489 -0.6216 2.2559 26 1 -0.3633 -1.0277 0.0033 27 1 -0.3633 0.5167 0.8883 28 1 -0.3633 0.5109 -0.8917 29 1 1.4445 -0.4322 -2.1156 30 1 1.9437 -1.8067 -1.1098 31 1 1.8481 -1.7701 -3.2003 32 1 4.7499 -2.3147 -6.1263 33 1 7.8574 0.7985 -2.4386 34 1 4.0057 -1.7997 -0.0307 35 1 5.3300 -0.9561 -0.8763 36 1 4.0398 1.1654 0.1646 37 1 5.3399 0.3067 1.0152 38 1 3.1454 0.7820 2.3166 39 1 3.8326 -0.8501 2.4157 40 1 1.2992 -1.0579 3.0818 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164229978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:02 Heat of formation + Delta-G solvation = -17.074494 kcal Electronic energy + Delta-G solvation = -22344.636332 eV Core-core repulsion = 19158.570335 eV Total energy + Delta-G solvation = -3186.065996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80171 -40.11448 -37.84906 -35.91127 -34.58580 -34.45043 -33.34033 -31.06392 -28.95351 -27.67099 -26.23925 -25.67298 -23.87142 -22.97983 -21.75217 -20.48404 -19.47596 -18.25226 -17.82449 -17.44805 -16.96691 -16.81622 -16.51136 -16.02667 -15.53473 -15.10305 -14.86678 -14.44945 -14.24555 -13.79213 -13.67914 -13.42317 -13.33050 -13.11092 -12.96988 -12.61369 -12.37427 -12.30400 -12.11673 -12.08910 -11.94817 -11.68968 -11.62721 -11.37474 -11.21387 -11.11851 -10.65687 -10.20882 -9.39249 -8.80133 -8.32597 -6.66289 0.65075 1.12724 1.42633 1.54584 1.56618 2.20323 2.65824 2.81272 3.31914 3.64462 3.68729 3.84035 3.97986 4.08121 4.12858 4.15618 4.30154 4.31982 4.43921 4.49082 4.60587 4.64227 4.70043 4.75758 4.86351 4.93687 4.94820 5.06891 5.11726 5.15860 5.17595 5.30771 5.39540 5.40719 5.49053 5.64524 6.00053 6.15068 6.37471 6.60880 6.78166 6.93612 7.36657 7.96327 8.31914 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.005404 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.434060 B = 5179.774740 C = 6170.352705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 H 0.076 0.924 4 C 0.079 3.921 5 N -0.486 5.486 6 C 0.289 3.711 7 C -0.173 4.173 8 N -0.425 5.425 9 C -0.111 4.111 10 C 0.198 3.802 11 C -0.434 4.434 12 H 0.102 0.898 13 C 0.024 3.976 14 N -0.734 5.734 15 Si 0.992 3.008 16 H -0.260 1.260 17 H -0.268 1.268 18 H -0.255 1.255 19 N -0.494 5.494 20 C 0.080 3.920 21 C -0.104 4.104 22 C -0.139 4.139 23 C 0.115 3.885 24 H 0.043 0.957 25 O -0.570 6.570 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.284 0.716 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.018 0.583 10.979 11.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.097 4.097 3 H 0.094 0.906 4 C -0.050 4.050 5 N -0.203 5.203 6 C 0.046 3.954 7 C -0.334 4.334 8 N -0.136 5.136 9 C -0.281 4.281 10 C 0.071 3.929 11 C -0.466 4.466 12 H 0.120 0.880 13 C -0.200 4.200 14 N -0.354 5.354 15 Si 0.812 3.188 16 H -0.184 1.184 17 H -0.193 1.193 18 H -0.179 1.179 19 N -0.217 5.217 20 C -0.045 4.045 21 C -0.142 4.142 22 C -0.177 4.177 23 C 0.056 3.944 24 H 0.061 0.939 25 O -0.377 6.377 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -4.302 1.511 10.801 11.725 hybrid contribution 0.900 -0.826 -0.167 1.233 sum -3.402 0.685 10.634 11.186 Atomic orbital electron populations 1.21459 0.92615 1.02120 1.01804 1.20982 0.97431 0.99768 0.91474 0.90607 1.21200 0.87088 0.97728 0.98945 1.55296 1.04343 1.59811 1.00845 1.21012 0.92274 0.89959 0.92157 1.23004 1.01618 1.12124 0.96675 1.67558 1.17999 1.14837 1.13240 1.23239 0.90785 1.11268 1.02772 1.19665 0.95205 0.89754 0.88311 1.20040 0.93961 1.24548 1.08036 0.87955 1.27066 1.04398 0.94134 0.94441 1.70174 1.36124 1.19379 1.09761 0.85101 0.75332 0.79399 0.78997 1.18426 1.19256 1.17911 1.69141 1.13849 1.23219 1.15512 1.21843 0.95554 0.96767 0.90356 1.21234 0.99856 0.98496 0.94624 1.22597 0.94891 1.02433 0.97795 1.21574 0.87198 0.97749 0.87839 0.93896 1.86554 1.44347 1.80853 1.25983 0.92681 0.91146 0.92784 0.90495 0.95312 0.83234 0.83708 0.90517 0.93725 0.91294 0.92041 0.90896 0.90236 0.90252 0.76109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 8.39 71.98 0.60 -2.30 16 2 C -0.08 -2.10 2.40 -11.04 -0.03 -2.12 16 3 H 0.08 2.22 7.11 -2.39 -0.02 2.20 16 4 C 0.08 2.64 3.14 88.07 0.28 2.92 16 5 N -0.49 -19.66 4.01 -717.43 -2.88 -22.53 16 6 C 0.29 14.23 6.50 133.37 0.87 15.10 16 7 C -0.17 -8.39 9.92 85.07 0.84 -7.55 16 8 N -0.42 -21.92 10.47 -192.23 -2.01 -23.93 16 9 C -0.11 -5.83 10.97 85.28 0.94 -4.90 16 10 C 0.20 10.93 6.54 40.15 0.26 11.19 16 11 C -0.43 -22.48 9.15 23.46 0.21 -22.27 16 12 H 0.10 4.83 7.86 -2.91 -0.02 4.81 16 13 C 0.02 1.15 5.49 85.30 0.47 1.62 16 14 N -0.73 -37.21 11.51 21.84 0.25 -36.96 16 15 Si 0.99 35.69 29.56 68.60 2.03 37.72 16 16 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 17 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 18 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 19 N -0.49 -27.14 6.93 -185.99 -1.29 -28.43 16 20 C 0.08 2.94 5.27 85.45 0.45 3.39 16 21 C -0.10 -3.05 5.41 30.16 0.16 -2.89 16 22 C -0.14 -3.05 5.49 31.27 0.17 -2.88 16 23 C 0.12 2.68 2.77 30.26 0.08 2.77 16 24 H 0.04 1.06 6.57 -2.39 -0.02 1.04 16 25 O -0.57 -11.29 11.40 -148.98 -1.70 -12.99 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.61 7.29 -2.39 -0.02 1.60 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 2.66 6.42 -2.39 -0.02 2.65 16 30 H 0.03 0.96 7.20 -2.39 -0.02 0.95 16 31 H 0.15 6.36 5.82 -2.91 -0.02 6.34 16 32 H 0.15 6.88 8.06 -2.91 -0.02 6.85 16 33 H 0.28 12.99 8.29 -92.70 -0.77 12.22 16 34 H 0.04 1.52 6.66 -2.39 -0.02 1.50 16 35 H 0.07 3.11 6.99 -2.39 -0.02 3.10 16 36 H 0.06 2.01 7.26 -2.39 -0.02 1.99 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.39 4.41 9.04 -74.06 -0.67 3.74 16 Total: -1.00 -63.73 311.89 0.10 -63.62 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.39 Total: 31.42 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 5.31 Total: -7.92 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -5.93 Total: -111.85 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.70 Total: -12.99 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.72 kcal Total: -63.73 0.10 -63.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164229978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.549 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds