Wall clock time and date at job start Mon Mar 30 2020 02:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.50171 * 2 1 4 4 C 1.53044 * 109.53863 * 120.09338 * 2 1 3 5 5 N 1.46842 * 109.52806 * 179.13996 * 4 2 1 6 6 C 1.38825 * 111.00249 * 174.16169 * 5 4 2 7 7 C 1.39963 * 119.96558 * 0.02562 * 6 5 4 8 8 N 1.32133 * 120.31251 * 179.97438 * 7 6 5 9 9 C 1.31926 * 120.27486 * 359.97438 * 8 7 6 10 10 C 1.40682 * 119.93307 * 0.02562 * 9 8 7 11 11 C 1.41268 * 120.15736 * 180.02562 * 10 9 8 12 12 H 1.08005 * 120.00023 * 353.93051 * 11 10 9 13 13 C 1.40058 * 120.00060 * 173.93250 * 11 10 9 14 14 N 1.30729 * 120.00310 * 6.39580 * 13 11 10 15 15 Si 1.86807 * 119.99934 * 186.38967 * 13 11 10 16 16 H 1.48504 * 109.46839 * 60.00375 * 15 13 11 17 17 H 1.48498 * 109.47099 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47248 * 300.00077 * 15 13 11 19 19 N 1.32238 * 119.96747 * 179.72485 * 6 5 4 20 20 C 1.46847 * 111.19773 * 298.26552 * 5 4 2 21 21 C 1.53030 * 109.52816 * 61.73859 * 20 5 4 22 22 C 1.53112 * 109.50661 * 239.91885 * 2 1 3 23 23 C 1.52998 * 109.52168 * 62.46248 * 22 2 1 24 24 O 1.42896 * 109.52463 * 302.33247 * 22 2 1 25 25 H 1.09001 * 109.47001 * 180.08374 * 1 2 3 26 26 H 1.09004 * 109.47404 * 300.07803 * 1 2 3 27 27 H 1.08994 * 109.47300 * 60.08314 * 1 2 3 28 28 H 1.08999 * 109.46105 * 299.16359 * 4 2 1 29 29 H 1.09001 * 109.45728 * 59.13460 * 4 2 1 30 30 H 1.07999 * 119.84481 * 359.94961 * 7 6 5 31 31 H 1.08003 * 120.03621 * 179.97438 * 9 8 7 32 32 H 0.96997 * 119.99758 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.46067 * 181.75507 * 20 5 4 34 34 H 1.09002 * 109.46105 * 301.73354 * 20 5 4 35 35 H 1.08994 * 109.50816 * 180.88022 * 21 20 5 36 36 H 1.09007 * 109.50788 * 60.75914 * 21 20 5 37 37 H 1.08994 * 109.47759 * 60.00140 * 23 22 2 38 38 H 1.09003 * 109.47049 * 299.99729 * 23 22 2 39 39 H 1.09008 * 109.47406 * 180.02562 * 23 22 2 40 40 H 0.96699 * 114.00310 * 180.12014 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7232 1.2479 5 7 3.5101 -0.7411 1.2373 6 6 4.0097 -1.2736 2.4180 7 6 3.1302 -1.7050 3.4176 8 7 3.5983 -2.2134 4.5438 9 6 4.8992 -2.3193 4.7356 10 6 5.7932 -1.8890 3.7382 11 6 7.1871 -2.0007 3.9384 12 1 7.5712 -2.3247 4.8945 13 6 8.0712 -1.6911 2.8971 14 7 7.6159 -1.1805 1.7831 15 14 9.9010 -2.0076 3.1003 16 1 10.1287 -3.4544 3.3460 17 1 10.6145 -1.5978 1.8641 18 1 10.4143 -1.2230 4.2518 19 7 5.3161 -1.3782 2.5946 20 6 4.0238 -1.4715 0.0716 21 6 3.5713 -0.7706 -1.2114 22 6 2.0412 -0.7234 -1.2489 23 6 1.5835 0.0299 -2.4994 24 8 1.5217 -2.0543 -1.2761 25 1 -0.3633 -1.0277 0.0015 26 1 -0.3634 0.5151 0.8893 27 1 -0.3633 0.5125 -0.8907 28 1 1.6913 -0.2023 2.1389 29 1 1.6663 -1.7465 1.2542 30 1 2.0639 -1.6216 3.2679 31 1 5.2776 -2.7350 5.6578 32 1 8.2283 -0.9658 1.0622 33 1 5.1129 -1.4941 0.1082 34 1 3.6388 -2.4912 0.0833 35 1 3.9396 -1.3218 -2.0765 36 1 3.9672 0.2448 -1.2305 37 1 1.9821 1.0442 -2.4790 38 1 0.4944 0.0679 -2.5224 39 1 1.9475 -0.4860 -3.3880 40 1 1.8070 -2.5723 -2.0412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164348041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:44 Heat of formation + Delta-G solvation = -4.160744 kcal Electronic energy + Delta-G solvation = -22396.671606 eV Core-core repulsion = 19211.165593 eV Total energy + Delta-G solvation = -3185.506014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10552 -38.67394 -36.00955 -33.98332 -33.44099 -31.69614 -31.59171 -29.65691 -27.88464 -26.18573 -25.67566 -22.79475 -22.73179 -21.37156 -20.48407 -19.53049 -17.58657 -16.25415 -16.13226 -15.59309 -15.30731 -15.00374 -14.75984 -14.42042 -14.10659 -13.74530 -13.43834 -13.11429 -12.88241 -12.45034 -12.11608 -11.92671 -11.65490 -11.63899 -11.50415 -11.35583 -11.26710 -11.12427 -10.96698 -10.68545 -10.59599 -10.40516 -9.99022 -9.79634 -9.57771 -9.45323 -9.32027 -8.36883 -7.48170 -7.00378 -6.44496 -4.68377 2.55133 2.99388 3.02053 3.04263 3.22426 3.85036 4.21147 4.40762 4.68091 4.75946 4.84241 4.97008 5.27526 5.49242 5.56531 5.64996 5.68330 5.75193 5.78169 5.82162 5.86864 5.95870 5.98510 6.06310 6.10744 6.22362 6.30626 6.31752 6.42859 6.52481 6.58775 6.63652 6.85570 6.99881 7.08210 7.52173 7.62851 7.75747 7.95299 8.09834 8.50120 8.72836 9.33267 9.90999 10.14843 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.005441 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.298431 B = 5145.003902 C = 6073.308718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 H 0.086 0.914 4 C 0.067 3.933 5 N -0.473 5.473 6 C 0.293 3.707 7 C -0.159 4.159 8 N -0.416 5.416 9 C -0.088 4.088 10 C 0.228 3.772 11 C -0.413 4.413 12 H 0.090 0.910 13 C 0.067 3.933 14 N -0.706 5.706 15 Si 0.911 3.089 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.263 1.263 19 N -0.467 5.467 20 C 0.075 3.925 21 C -0.141 4.141 22 C 0.131 3.869 23 C -0.177 4.177 24 O -0.555 6.555 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.276 0.724 33 H 0.101 0.899 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.696 1.843 -9.713 11.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 H 0.104 0.896 4 C -0.061 4.061 5 N -0.191 5.191 6 C 0.051 3.949 7 C -0.319 4.319 8 N -0.128 5.128 9 C -0.258 4.258 10 C 0.100 3.900 11 C -0.446 4.446 12 H 0.108 0.892 13 C -0.159 4.159 14 N -0.326 5.326 15 Si 0.735 3.265 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.188 1.188 19 N -0.188 5.188 20 C -0.052 4.052 21 C -0.179 4.179 22 C 0.090 3.910 23 C -0.234 4.234 24 O -0.360 6.360 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.784 2.632 -9.477 11.948 hybrid contribution 0.890 -0.867 -0.440 1.318 sum -5.894 1.764 -9.917 11.671 Atomic orbital electron populations 1.21753 0.94567 1.02474 1.01209 1.21161 0.95760 0.99231 0.92923 0.89617 1.22133 0.86571 0.99984 0.97367 1.58228 1.07286 1.52034 1.01512 1.20657 0.92377 0.91253 0.90632 1.22638 0.98557 1.15387 0.95356 1.67557 1.16080 1.08929 1.20240 1.23039 0.89170 1.12020 1.01577 1.19225 0.94557 0.88933 0.87258 1.19587 0.89259 1.36726 0.98981 0.89168 1.26131 1.01404 0.93574 0.94839 1.70098 1.36412 1.23263 1.02862 0.86318 0.81320 0.80025 0.78830 1.18781 1.20156 1.18759 1.69181 1.08438 1.18526 1.22695 1.21950 1.02100 0.93892 0.87236 1.22313 0.95118 1.02559 0.97909 1.21266 0.92373 0.82615 0.94702 1.22509 1.02134 1.01202 0.97555 1.86558 1.74658 1.24860 1.49930 0.91827 0.92761 0.92670 0.90458 0.93226 0.85548 0.85118 0.91315 0.88050 0.94826 0.91556 0.90283 0.91634 0.91723 0.92657 0.78323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.74 37.16 0.32 -1.36 16 2 C -0.07 -1.00 2.22 -90.54 -0.20 -1.20 16 3 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 4 C 0.07 1.18 3.29 -3.83 -0.01 1.17 16 5 N -0.47 -9.88 4.72 -173.07 -0.82 -10.70 16 6 C 0.29 7.31 6.46 -155.02 -1.00 6.30 16 7 C -0.16 -3.92 10.00 -16.78 -0.17 -4.09 16 8 N -0.42 -10.82 10.47 -12.11 -0.13 -10.95 16 9 C -0.09 -2.29 10.97 -16.59 -0.18 -2.48 16 10 C 0.23 6.26 6.54 -84.83 -0.55 5.71 16 11 C -0.41 -10.74 9.15 -37.75 -0.35 -11.08 16 12 H 0.09 2.15 7.86 -52.48 -0.41 1.74 16 13 C 0.07 1.65 5.49 -17.34 -0.10 1.55 16 14 N -0.71 -17.99 11.51 55.55 0.64 -17.35 16 15 Si 0.91 17.87 29.56 -169.99 -5.03 12.84 16 16 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 17 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 19 N -0.47 -12.79 7.34 -10.14 -0.07 -12.87 16 20 C 0.07 1.43 5.20 -3.84 -0.02 1.41 16 21 C -0.14 -2.03 5.08 -26.65 -0.14 -2.16 16 22 C 0.13 1.66 0.67 -90.50 -0.06 1.60 16 23 C -0.18 -1.76 8.53 37.16 0.32 -1.45 16 24 O -0.55 -7.18 11.09 -35.23 -0.39 -7.58 16 25 H 0.06 0.81 7.63 -51.93 -0.40 0.41 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.56 6.50 -51.93 -0.34 0.23 16 28 H 0.08 1.36 6.96 -51.93 -0.36 1.00 16 29 H 0.05 0.92 7.34 -51.93 -0.38 0.54 16 30 H 0.13 2.81 5.78 -52.49 -0.30 2.50 16 31 H 0.13 3.08 8.06 -52.48 -0.42 2.66 16 32 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 33 H 0.10 2.25 7.59 -51.93 -0.39 1.86 16 34 H 0.03 0.67 7.76 -51.93 -0.40 0.26 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.62 6.50 -51.93 -0.34 0.28 16 39 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.37 3.47 9.05 45.56 0.41 3.88 16 LS Contribution 316.51 15.07 4.77 4.77 Total: -1.00 -30.27 316.51 -8.17 -38.43 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.01 Total: 9.47 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.13 Total: -6.07 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.38 Total: -51.87 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.39 Total: -7.58 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.27 -8.17 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164348041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.273 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds