Wall clock time and date at job start Mon Mar 30 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.53870 * 2 1 4 4 C 1.53041 * 109.50469 * 239.89823 * 2 1 3 5 5 N 1.46847 * 109.51432 * 180.87741 * 4 2 1 6 6 C 1.38820 * 110.99627 * 185.84899 * 5 4 2 7 7 C 1.39962 * 119.97544 * 359.97438 * 6 5 4 8 8 N 1.32126 * 120.32176 * 180.02562 * 7 6 5 9 9 C 1.31929 * 120.26794 * 359.97438 * 8 7 6 10 10 C 1.40684 * 119.93783 * 0.02562 * 9 8 7 11 11 C 1.41273 * 120.15757 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99768 * 353.74857 * 11 10 9 13 13 C 1.40050 * 120.00093 * 173.75149 * 11 10 9 14 14 N 1.30731 * 119.99934 * 6.28635 * 13 11 10 15 15 Si 1.86800 * 120.00018 * 186.28696 * 13 11 10 16 16 H 1.48496 * 109.47158 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47184 * 120.00010 * 15 13 11 18 18 H 1.48508 * 109.46972 * 240.00001 * 15 13 11 19 19 N 1.32245 * 119.96616 * 179.72573 * 6 5 4 20 20 C 1.46840 * 111.19907 * 61.75012 * 5 4 2 21 21 C 1.53043 * 109.52519 * 298.25669 * 20 5 4 22 22 C 1.53116 * 109.27650 * 59.17872 * 21 20 5 23 23 C 1.53000 * 109.52510 * 62.25261 * 22 21 20 24 24 O 1.42899 * 109.52350 * 182.37711 * 22 21 20 25 25 H 1.08997 * 109.47299 * 180.09606 * 1 2 3 26 26 H 1.08998 * 109.46904 * 300.10049 * 1 2 3 27 27 H 1.08997 * 109.46541 * 60.09634 * 1 2 3 28 28 H 1.09005 * 109.45717 * 60.86698 * 4 2 1 29 29 H 1.08998 * 109.46117 * 300.88795 * 4 2 1 30 30 H 1.07997 * 119.83372 * 0.02562 * 7 6 5 31 31 H 1.08006 * 120.03040 * 179.97438 * 9 8 7 32 32 H 0.97000 * 119.99849 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.46624 * 58.27329 * 20 5 4 34 34 H 1.09004 * 109.46600 * 178.24145 * 20 5 4 35 35 H 1.08995 * 109.50317 * 179.12206 * 21 20 5 36 36 H 1.09000 * 109.50309 * 299.20149 * 21 20 5 37 37 H 1.09002 * 109.47148 * 59.99670 * 23 22 21 38 38 H 1.09002 * 109.47085 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.46906 * 300.00170 * 23 22 21 40 40 H 0.96696 * 114.00473 * 300.00568 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0410 -0.7235 -1.2480 5 7 3.5093 -0.7420 -1.2377 6 6 4.0084 -1.2746 -2.4185 7 6 3.1286 -1.7055 -3.4181 8 7 3.5962 -2.2140 -4.5444 9 6 4.8971 -2.3194 -4.7369 10 6 5.7914 -1.8897 -3.7396 11 6 7.1854 -2.0009 -3.9405 12 1 7.5661 -2.5075 -4.8151 13 6 8.0735 -1.4544 -3.0057 14 7 7.6183 -0.9507 -1.8885 15 14 9.9085 -1.4452 -3.3550 16 1 10.1637 -2.0703 -4.6777 17 1 10.4036 -0.0452 -3.3648 18 1 10.6171 -2.2135 -2.3000 19 7 5.3149 -1.3698 -2.5999 20 6 4.0229 -1.4729 -0.0722 21 6 3.5709 -0.7719 1.2110 22 6 2.0410 -0.7240 1.2488 23 6 1.4853 -2.1492 1.2770 24 8 1.6139 -0.0218 2.4177 25 1 -0.3634 -1.0276 0.0017 26 1 -0.3633 0.5154 0.8891 27 1 -0.3632 0.5123 -0.8909 28 1 1.6906 -0.2023 -2.1389 29 1 1.6649 -1.7465 -1.2542 30 1 2.0624 -1.6220 -3.2679 31 1 5.2751 -2.7360 -5.6589 32 1 8.2334 -0.5725 -1.2408 33 1 3.6376 -2.4924 -0.0841 34 1 5.1121 -1.4960 -0.1091 35 1 3.9393 -1.3235 2.0760 36 1 3.9680 0.2430 1.2305 37 1 1.8542 -2.6656 2.1633 38 1 0.3962 -2.1141 1.3035 39 1 1.8097 -2.6835 0.3840 40 1 1.9069 -0.4235 3.2470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164348043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:50 Heat of formation + Delta-G solvation = -22.881266 kcal Electronic energy + Delta-G solvation = -22408.117980 eV Core-core repulsion = 19221.800184 eV Total energy + Delta-G solvation = -3186.317797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.75133 -40.33415 -37.61243 -35.89978 -34.74894 -33.40943 -33.11078 -30.94841 -29.07864 -27.76684 -27.22744 -24.98971 -24.45460 -22.98603 -22.28589 -19.88986 -19.36531 -18.16879 -17.69414 -17.34124 -16.89804 -16.65678 -16.38456 -15.92732 -15.77181 -14.99610 -14.87229 -14.39693 -14.17988 -13.98756 -13.39912 -13.33603 -13.06031 -13.01796 -12.93800 -12.82038 -12.72090 -12.59297 -12.32562 -12.15822 -11.97117 -11.78251 -11.68836 -11.43886 -11.23525 -11.07803 -10.69969 -10.24731 -9.42138 -8.84875 -8.33902 -6.67954 0.61946 1.10496 1.41392 1.52210 1.57643 2.18900 2.62781 2.79696 3.21675 3.61130 3.69166 3.81803 3.97743 4.00323 4.10409 4.18359 4.24452 4.32699 4.42848 4.50178 4.56012 4.63558 4.70341 4.77285 4.79370 4.90490 4.98702 5.02413 5.08332 5.12998 5.15457 5.18857 5.22821 5.36147 5.48436 5.62848 5.92316 6.09450 6.21248 6.57606 6.76592 6.92380 7.34580 7.94391 8.30317 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.005387 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.381872 B = 5196.396049 C = 6095.211042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 H 0.066 0.934 4 C 0.066 3.934 5 N -0.481 5.481 6 C 0.285 3.715 7 C -0.169 4.169 8 N -0.424 5.424 9 C -0.109 4.109 10 C 0.196 3.804 11 C -0.434 4.434 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.737 5.737 15 Si 0.993 3.007 16 H -0.249 1.249 17 H -0.269 1.269 18 H -0.264 1.264 19 N -0.495 5.495 20 C 0.079 3.921 21 C -0.132 4.132 22 C 0.142 3.858 23 C -0.179 4.179 24 O -0.564 6.564 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.283 0.717 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 -0.313 9.591 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 H 0.085 0.915 4 C -0.061 4.061 5 N -0.199 5.199 6 C 0.042 3.958 7 C -0.330 4.330 8 N -0.136 5.136 9 C -0.278 4.278 10 C 0.069 3.931 11 C -0.465 4.465 12 H 0.121 0.879 13 C -0.202 4.202 14 N -0.358 5.358 15 Si 0.813 3.187 16 H -0.172 1.172 17 H -0.194 1.194 18 H -0.189 1.189 19 N -0.218 5.218 20 C -0.047 4.047 21 C -0.170 4.170 22 C 0.101 3.899 23 C -0.236 4.236 24 O -0.372 6.372 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.171 0.829 31 H 0.164 0.836 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.114 0.674 9.453 11.850 hybrid contribution 0.947 -0.878 -0.093 1.295 sum -6.167 -0.204 9.361 11.211 Atomic orbital electron populations 1.21738 0.92341 1.02749 1.02518 1.21050 0.97378 0.99219 0.91336 0.91520 1.22360 0.84396 1.00225 0.99120 1.58257 1.09305 1.51651 1.00716 1.21059 0.91993 0.90641 0.92104 1.23056 0.99763 1.15189 0.95001 1.67571 1.16030 1.09146 1.20853 1.23249 0.89321 1.13371 1.01870 1.19698 0.95748 0.89755 0.87927 1.20104 0.89329 1.30005 1.07110 0.87854 1.27107 1.06454 0.92950 0.93642 1.70198 1.38455 1.21512 1.05586 0.84985 0.74636 0.79009 0.80106 1.17245 1.19376 1.18861 1.69175 1.09890 1.19899 1.22831 1.21935 1.00346 0.94073 0.88370 1.22275 0.96739 1.01486 0.96483 1.21034 0.91314 0.91559 0.85952 1.22589 1.02715 0.95597 1.02730 1.86494 1.78683 1.55833 1.16221 0.91492 0.91332 0.92050 0.90133 0.92918 0.82944 0.83609 0.90596 0.94753 0.91600 0.88921 0.91838 0.90719 0.90270 0.92865 0.75992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.67 71.98 0.62 -2.28 16 2 C -0.07 -1.91 2.39 -10.74 -0.03 -1.93 16 3 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 4 C 0.07 2.14 3.17 86.33 0.27 2.41 16 5 N -0.48 -19.79 4.72 -701.45 -3.31 -23.11 16 6 C 0.28 14.12 6.45 133.37 0.86 14.98 16 7 C -0.17 -8.11 10.00 85.07 0.85 -7.26 16 8 N -0.42 -21.72 10.47 -192.23 -2.01 -23.74 16 9 C -0.11 -5.69 10.97 85.28 0.94 -4.76 16 10 C 0.20 10.89 6.54 40.15 0.26 11.15 16 11 C -0.43 -22.64 9.15 23.46 0.21 -22.42 16 12 H 0.10 4.93 7.86 -2.91 -0.02 4.90 16 13 C 0.02 1.10 5.49 85.30 0.47 1.56 16 14 N -0.74 -38.12 11.51 21.84 0.25 -37.87 16 15 Si 0.99 36.11 29.56 68.60 2.03 38.14 16 16 H -0.25 -8.63 7.11 99.48 0.71 -7.93 16 17 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 18 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 19 N -0.50 -27.56 7.36 -186.00 -1.37 -28.93 16 20 C 0.08 2.95 5.09 86.33 0.44 3.39 16 21 C -0.13 -3.71 5.22 30.65 0.16 -3.55 16 22 C 0.14 3.41 0.84 -10.71 -0.01 3.40 16 23 C -0.18 -3.72 7.82 71.98 0.56 -3.15 16 24 O -0.56 -12.03 12.43 -148.98 -1.85 -13.88 16 25 H 0.07 1.28 6.39 -2.39 -0.02 1.27 16 26 H 0.07 1.43 7.76 -2.39 -0.02 1.41 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 2.65 6.96 -2.38 -0.02 2.64 16 29 H 0.05 1.64 6.08 -2.39 -0.01 1.62 16 30 H 0.15 6.31 5.78 -2.91 -0.02 6.29 16 31 H 0.15 6.90 8.06 -2.91 -0.02 6.87 16 32 H 0.28 13.18 8.29 -92.71 -0.77 12.41 16 33 H 0.03 1.25 6.51 -2.39 -0.02 1.24 16 34 H 0.07 2.97 7.60 -2.38 -0.02 2.96 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.45 6.41 -2.39 -0.02 1.44 16 39 H 0.05 1.30 4.92 -2.39 -0.01 1.29 16 40 H 0.39 5.10 9.05 -74.06 -0.67 4.43 16 Total: -1.00 -65.56 311.56 -0.26 -65.82 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.40 Total: 32.04 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 5.62 Total: -8.46 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -6.44 Total: -113.65 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -1.85 Total: -13.88 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -65.56 -0.26 -65.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164348043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.936 kcal (2) G-P(sol) polarization free energy of solvation -65.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds