Wall clock time and date at job start Mon Mar 30 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47228 * 2 1 4 4 O 1.21284 * 119.99710 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00334 * 180.27525 * 3 2 1 6 6 C 1.39429 * 120.00237 * 174.63804 * 5 3 2 7 7 C 1.38728 * 119.65775 * 185.07046 * 6 5 3 8 8 C 1.39187 * 119.00766 * 180.02562 * 7 6 5 9 9 N 1.39202 * 120.82898 * 179.97438 * 8 7 6 10 10 C 1.46494 * 120.00173 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47194 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47297 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47518 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99483 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00106 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00047 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99845 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47268 * 89.99886 * 17 15 13 19 19 H 1.48503 * 109.47191 * 210.00008 * 17 15 13 20 20 H 1.48509 * 109.46874 * 329.99922 * 17 15 13 21 21 C 1.39652 * 118.34563 * 0.02562 * 8 7 6 22 22 C 1.37776 * 119.21276 * 359.97438 * 21 8 7 23 23 N 1.32059 * 120.92841 * 359.72043 * 22 21 8 24 24 H 1.08997 * 109.47698 * 59.99482 * 1 2 3 25 25 H 1.08999 * 109.47463 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47364 * 299.99836 * 1 2 3 27 27 H 1.09003 * 109.46862 * 240.00067 * 2 1 3 28 28 H 1.09005 * 109.47551 * 120.00239 * 2 1 3 29 29 H 0.97001 * 119.99956 * 354.64613 * 5 3 2 30 30 H 1.08001 * 120.49514 * 0.02802 * 7 6 5 31 31 H 0.96999 * 119.99949 * 0.02562 * 9 8 7 32 32 H 1.08997 * 109.47403 * 300.00548 * 10 9 8 33 33 H 1.09001 * 109.46805 * 60.00079 * 10 9 8 34 34 H 1.08997 * 109.47257 * 300.00471 * 11 10 9 35 35 H 1.08999 * 109.46803 * 60.00162 * 11 10 9 36 36 H 1.08997 * 109.47235 * 300.00341 * 12 11 10 37 37 H 1.09001 * 109.46870 * 59.99810 * 12 11 10 38 38 H 0.97001 * 119.99742 * 179.97438 * 16 15 13 39 39 H 1.07994 * 120.39511 * 179.97438 * 21 8 7 40 40 H 1.08003 * 119.53443 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6671 -0.0056 6 6 3.8226 2.9766 -0.1185 7 6 5.1849 3.2140 -0.2298 8 6 5.6344 4.5265 -0.3411 9 7 6.9930 4.8081 -0.4543 10 6 7.4461 6.1963 -0.5711 11 6 8.9718 6.2272 -0.6814 12 6 9.4451 7.6771 -0.8028 13 6 10.9479 7.7076 -0.9108 14 1 11.5092 6.7851 -0.8950 15 6 11.6061 8.9132 -1.0299 16 7 10.9226 10.0366 -1.0486 17 14 13.4689 8.9510 -1.1645 18 1 13.8635 8.8774 -2.5942 19 1 13.9825 10.2129 -0.5736 20 1 14.0416 7.7926 -0.4326 21 6 4.6887 5.5541 -0.3354 22 6 3.3526 5.2376 -0.2212 23 7 2.9587 3.9810 -0.1232 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9874 0.9333 0.0687 30 1 5.8861 2.3926 -0.2300 31 1 7.6396 4.0850 -0.4566 32 1 7.0085 6.6477 -1.4615 33 1 7.1338 6.7558 0.3107 34 1 9.4097 5.7757 0.2087 35 1 9.2836 5.6678 -1.5634 36 1 9.0072 8.1290 -1.6927 37 1 9.1332 8.2361 0.0795 38 1 11.3858 10.8847 -1.1320 39 1 5.0009 6.5845 -0.4195 40 1 2.6168 6.0282 -0.2166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168436115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:13 Heat of formation + Delta-G solvation = -9.760861 kcal Electronic energy + Delta-G solvation = -20007.952045 eV Core-core repulsion = 16822.203192 eV Total energy + Delta-G solvation = -3185.748853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74825 -39.25132 -36.70255 -34.87420 -33.82806 -33.05351 -31.97545 -30.07058 -29.59383 -26.55062 -25.20109 -23.55711 -23.25885 -21.71419 -20.59984 -20.12834 -18.08275 -17.51997 -16.49507 -16.09182 -15.99803 -15.60229 -15.29798 -14.97453 -14.55393 -14.33604 -14.20956 -13.93508 -13.64799 -13.24155 -12.66442 -12.41649 -12.29464 -12.07596 -11.89364 -11.66822 -11.50165 -11.07315 -10.81479 -10.77606 -10.62364 -10.41014 -10.24364 -9.85084 -9.55924 -9.19952 -8.96385 -8.43083 -8.31230 -7.68203 -6.07807 -4.10950 1.22556 1.71465 2.57888 2.70355 3.26929 3.33539 3.36034 3.54067 4.09261 4.25803 4.39623 4.63829 4.74571 4.80627 5.09086 5.16903 5.22142 5.28266 5.31649 5.45400 5.47654 5.59742 5.63004 5.63083 5.89628 5.90914 6.01408 6.15791 6.22141 6.48855 6.52038 6.76233 6.89115 7.09945 7.32978 7.55507 7.67511 7.75527 7.90319 7.96626 8.31715 8.38041 8.95387 9.53656 11.03433 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.062454 B = 0.002308 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.221729 B =12130.923683 C =12538.577361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.498 3.502 4 O -0.469 6.469 5 N -0.665 5.665 6 C 0.390 3.610 7 C -0.294 4.294 8 C 0.281 3.719 9 N -0.728 5.728 10 C 0.117 3.883 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.275 4.275 22 C 0.164 3.836 23 N -0.523 5.523 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.414 0.586 30 H 0.128 0.872 31 H 0.400 0.600 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.134 0.866 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.842 -19.649 2.114 25.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.284 3.716 4 O -0.338 6.338 5 N -0.312 5.312 6 C 0.160 3.840 7 C -0.324 4.324 8 C 0.165 3.835 9 N -0.354 5.354 10 C -0.006 4.006 11 C -0.159 4.159 12 C -0.013 4.013 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.301 4.301 22 C 0.008 3.992 23 N -0.242 5.242 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.250 0.750 30 H 0.146 0.854 31 H 0.235 0.765 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.152 0.848 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.300 -18.808 2.144 25.645 hybrid contribution 2.755 -0.333 -0.139 2.778 sum -14.545 -19.141 2.005 24.124 Atomic orbital electron populations 1.21538 0.92766 1.01667 1.03588 1.21660 0.98906 0.93321 1.04396 1.21031 0.81725 0.92181 0.76708 1.90823 1.54095 1.45870 1.42999 1.43641 1.08571 1.06328 1.72615 1.18046 0.88159 0.85280 0.92554 1.20671 0.94602 0.96250 1.20852 1.17779 0.85136 0.92357 0.88220 1.45001 1.03008 1.09220 1.78198 1.21720 0.97204 0.80657 1.00989 1.21863 0.90721 1.02350 1.00920 1.19028 0.96071 0.88705 0.97522 1.21190 0.91942 0.92508 1.50563 0.92669 1.25025 0.98466 0.95722 0.95235 1.69954 1.35533 0.97540 1.50207 0.86574 0.85574 0.77482 0.78245 1.20631 1.21152 1.19899 1.21633 0.93762 0.99694 1.15023 1.22312 0.93574 0.92392 0.90906 1.67664 1.36689 0.99020 1.20788 0.91841 0.91987 0.91848 0.88794 0.88858 0.75001 0.85440 0.76497 0.92101 0.92085 0.92705 0.92710 0.96290 0.96275 0.92880 0.84794 0.82812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.60 16 2 C -0.14 -0.86 6.42 -27.89 -0.18 -1.04 16 3 C 0.50 5.38 7.79 -10.99 -0.09 5.29 16 4 O -0.47 -7.26 14.24 5.55 0.08 -7.18 16 5 N -0.66 -6.52 5.39 -11.47 -0.06 -6.59 16 6 C 0.39 5.18 7.42 -154.69 -1.15 4.03 16 7 C -0.29 -3.58 9.82 -39.05 -0.38 -3.96 16 8 C 0.28 3.83 6.69 -83.63 -0.56 3.27 16 9 N -0.73 -9.82 5.72 -58.49 -0.33 -10.16 16 10 C 0.12 1.84 4.95 -4.05 -0.02 1.82 16 11 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 17 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.27 -3.78 9.38 -39.22 -0.37 -4.15 16 22 C 0.16 2.28 11.16 -17.62 -0.20 2.08 16 23 N -0.52 -8.13 7.88 -12.46 -0.10 -8.23 16 24 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.41 2.33 8.70 -40.82 -0.36 1.97 16 30 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.40 4.75 8.50 -40.82 -0.35 4.40 16 32 H 0.06 0.97 7.99 -51.93 -0.42 0.56 16 33 H 0.06 0.97 7.99 -51.93 -0.41 0.56 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.13 1.76 6.89 -52.49 -0.36 1.40 16 40 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -34.03 340.45 -8.94 -42.97 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.08 Total: 1.76 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -3.29 Total: -8.36 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.24 Total: -50.51 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.08 Total: -7.18 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.03 -8.94 -42.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.211 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds