Wall clock time and date at job start Mon Mar 30 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47228 * 2 1 4 4 O 1.21284 * 119.99710 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00334 * 180.27525 * 3 2 1 6 6 C 1.39429 * 120.00237 * 174.63804 * 5 3 2 7 7 C 1.38728 * 119.65775 * 185.07046 * 6 5 3 8 8 C 1.39187 * 119.00766 * 180.02562 * 7 6 5 9 9 N 1.39202 * 120.82898 * 179.97438 * 8 7 6 10 10 C 1.46494 * 120.00173 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47194 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47297 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47518 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99483 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00106 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00047 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99845 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47268 * 89.99886 * 17 15 13 19 19 H 1.48503 * 109.47191 * 210.00008 * 17 15 13 20 20 H 1.48509 * 109.46874 * 329.99922 * 17 15 13 21 21 C 1.39652 * 118.34563 * 0.02562 * 8 7 6 22 22 C 1.37776 * 119.21276 * 359.97438 * 21 8 7 23 23 N 1.32059 * 120.92841 * 359.72043 * 22 21 8 24 24 H 1.08997 * 109.47698 * 59.99482 * 1 2 3 25 25 H 1.08999 * 109.47463 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47364 * 299.99836 * 1 2 3 27 27 H 1.09003 * 109.46862 * 240.00067 * 2 1 3 28 28 H 1.09005 * 109.47551 * 120.00239 * 2 1 3 29 29 H 0.97001 * 119.99956 * 354.64613 * 5 3 2 30 30 H 1.08001 * 120.49514 * 0.02802 * 7 6 5 31 31 H 0.96999 * 119.99949 * 0.02562 * 9 8 7 32 32 H 1.08997 * 109.47403 * 300.00548 * 10 9 8 33 33 H 1.09001 * 109.46805 * 60.00079 * 10 9 8 34 34 H 1.08997 * 109.47257 * 300.00471 * 11 10 9 35 35 H 1.08999 * 109.46803 * 60.00162 * 11 10 9 36 36 H 1.08997 * 109.47235 * 300.00341 * 12 11 10 37 37 H 1.09001 * 109.46870 * 59.99810 * 12 11 10 38 38 H 0.97001 * 119.99742 * 179.97438 * 16 15 13 39 39 H 1.07994 * 120.39511 * 179.97438 * 21 8 7 40 40 H 1.08003 * 119.53443 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6671 -0.0056 6 6 3.8226 2.9766 -0.1185 7 6 5.1849 3.2140 -0.2298 8 6 5.6344 4.5265 -0.3411 9 7 6.9930 4.8081 -0.4543 10 6 7.4461 6.1963 -0.5711 11 6 8.9718 6.2272 -0.6814 12 6 9.4451 7.6771 -0.8028 13 6 10.9479 7.7076 -0.9108 14 1 11.5092 6.7851 -0.8950 15 6 11.6061 8.9132 -1.0299 16 7 10.9226 10.0366 -1.0486 17 14 13.4689 8.9510 -1.1645 18 1 13.8635 8.8774 -2.5942 19 1 13.9825 10.2129 -0.5736 20 1 14.0416 7.7926 -0.4326 21 6 4.6887 5.5541 -0.3354 22 6 3.3526 5.2376 -0.2212 23 7 2.9587 3.9810 -0.1232 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9874 0.9333 0.0687 30 1 5.8861 2.3926 -0.2300 31 1 7.6396 4.0850 -0.4566 32 1 7.0085 6.6477 -1.4615 33 1 7.1338 6.7558 0.3107 34 1 9.4097 5.7757 0.2087 35 1 9.2836 5.6678 -1.5634 36 1 9.0072 8.1290 -1.6927 37 1 9.1332 8.2361 0.0795 38 1 11.3858 10.8847 -1.1320 39 1 5.0009 6.5845 -0.4195 40 1 2.6168 6.0282 -0.2166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168436115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:13 Heat of formation + Delta-G solvation = -32.073847 kcal Electronic energy + Delta-G solvation = -20008.919609 eV Core-core repulsion = 16822.203192 eV Total energy + Delta-G solvation = -3186.716417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68534 -40.19828 -37.90718 -35.95635 -35.47628 -33.74307 -33.58540 -31.23957 -30.76316 -28.18853 -26.06887 -24.86198 -24.49927 -22.78270 -22.07213 -21.10699 -19.04324 -18.58778 -18.27859 -17.11740 -16.76384 -16.71589 -16.51490 -16.33902 -16.26992 -15.19445 -15.13283 -15.09813 -14.64061 -14.30204 -14.21982 -13.74303 -13.70090 -13.15955 -12.84656 -12.83842 -12.62038 -12.46470 -12.30592 -12.14123 -11.98043 -11.62139 -11.48283 -11.32784 -11.19996 -11.15444 -10.55892 -9.97480 -9.26322 -8.77634 -8.20790 -6.31581 0.22869 0.66329 1.40952 1.41603 1.52527 1.75987 1.91211 2.38068 2.47911 3.07368 3.13176 3.51591 3.87393 4.10103 4.13769 4.22097 4.22957 4.28402 4.30665 4.33488 4.57594 4.63380 4.77168 4.87125 4.95765 5.01100 5.04031 5.08810 5.14247 5.18329 5.25600 5.38788 5.50120 5.71369 5.79564 5.83788 6.16528 6.26077 6.33924 6.75356 6.85807 7.11093 7.37870 7.48275 8.90896 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.062454 B = 0.002308 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.221729 B =12130.923683 C =12538.577361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.491 3.509 4 O -0.525 6.525 5 N -0.652 5.652 6 C 0.376 3.624 7 C -0.282 4.282 8 C 0.268 3.732 9 N -0.722 5.722 10 C 0.133 3.867 11 C -0.104 4.104 12 C 0.025 3.975 13 C -0.543 4.543 14 H 0.062 0.938 15 C -0.002 4.002 16 N -0.932 5.932 17 Si 0.964 3.036 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.262 1.262 21 C -0.284 4.284 22 C 0.154 3.846 23 N -0.555 5.555 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.435 0.565 30 H 0.161 0.839 31 H 0.411 0.589 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.061 0.939 36 H -0.005 1.005 37 H -0.004 1.004 38 H 0.263 0.737 39 H 0.134 0.866 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.728 -22.497 2.190 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.279 3.721 4 O -0.398 6.398 5 N -0.300 5.300 6 C 0.145 3.855 7 C -0.311 4.311 8 C 0.153 3.847 9 N -0.350 5.350 10 C 0.008 3.992 11 C -0.142 4.142 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.200 4.200 16 N -0.572 5.572 17 Si 0.789 3.211 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.187 1.187 21 C -0.311 4.311 22 C -0.002 4.002 23 N -0.275 5.275 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.275 0.725 30 H 0.178 0.822 31 H 0.247 0.753 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.072 0.928 39 H 0.152 0.848 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -16.165 -21.729 2.224 27.173 hybrid contribution 2.341 0.526 -0.157 2.404 sum -13.824 -21.203 2.067 25.396 Atomic orbital electron populations 1.21555 0.93636 1.02776 1.01734 1.21724 0.97989 0.90180 1.07159 1.22009 0.81417 0.93667 0.75009 1.90803 1.55424 1.47937 1.45587 1.43658 1.09023 1.05712 1.71644 1.18402 0.88564 0.86194 0.92359 1.20896 0.94675 0.96499 1.19066 1.17925 0.84902 0.93099 0.88759 1.44696 1.03261 1.08337 1.78681 1.21339 0.95044 0.82094 1.00673 1.21567 0.92689 0.98362 1.01543 1.18934 0.95025 0.92082 0.95268 1.21683 0.93524 0.92869 1.50004 0.91933 1.25976 1.03684 0.95409 0.94905 1.70088 1.37606 0.98184 1.51348 0.85460 0.79385 0.77750 0.78524 1.19883 1.20967 1.18652 1.21727 0.93995 0.99996 1.15351 1.22558 0.94056 0.92589 0.90954 1.67683 1.38121 0.99937 1.21721 0.93827 0.89253 0.93699 0.85935 0.85766 0.72530 0.82179 0.75264 0.92565 0.92534 0.91990 0.91980 0.98627 0.98607 0.92801 0.84776 0.81564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.20 71.98 0.66 -1.04 16 2 C -0.13 -1.21 6.42 29.85 0.19 -1.01 16 3 C 0.49 9.97 7.79 87.66 0.68 10.65 16 4 O -0.53 -16.49 14.24 -3.04 -0.04 -16.54 16 5 N -0.65 -11.45 5.39 -308.59 -1.66 -13.11 16 6 C 0.38 9.51 7.42 132.80 0.98 10.49 16 7 C -0.28 -6.25 9.82 22.62 0.22 -6.03 16 8 C 0.27 6.95 6.69 38.54 0.26 7.21 16 9 N -0.72 -18.22 5.72 -338.97 -1.94 -20.16 16 10 C 0.13 4.08 4.95 86.38 0.43 4.51 16 11 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 12 C 0.02 1.23 4.97 29.85 0.15 1.37 16 13 C -0.54 -29.75 9.11 25.60 0.23 -29.52 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 16 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 17 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 21 C -0.28 -7.80 9.38 22.50 0.21 -7.59 16 22 C 0.15 4.35 11.16 84.55 0.94 5.29 16 23 N -0.56 -17.32 7.88 -193.33 -1.52 -18.85 16 24 H 0.04 0.70 8.10 -2.39 -0.02 0.68 16 25 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.04 0.71 8.10 -2.38 -0.02 0.69 16 27 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.12 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.43 3.46 8.70 -92.71 -0.81 2.65 16 30 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.41 8.66 8.50 -92.71 -0.79 7.87 16 32 H 0.06 1.79 7.99 -2.39 -0.02 1.77 16 33 H 0.06 1.80 7.99 -2.39 -0.02 1.78 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 36 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.13 3.58 6.89 -2.91 -0.02 3.56 16 40 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -75.60 340.45 2.18 -73.41 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -0.55 Total: 14.35 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 5.59 Total: -8.93 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.84 Total: -107.55 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.04 Total: -16.54 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -75.60 2.18 -73.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.339 kcal (2) G-P(sol) polarization free energy of solvation -75.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds