Wall clock time and date at job start Mon Mar 30 2020 02:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46918 * 2 1 4 4 N 1.46504 * 109.47180 * 240.00493 * 2 1 3 5 5 C 1.38094 * 119.99728 * 84.99563 * 4 2 1 6 6 N 1.32269 * 119.90840 * 0.02562 * 5 4 2 7 7 C 1.31964 * 121.86353 * 179.97438 * 6 5 4 8 8 C 1.38679 * 121.45425 * 0.02562 * 7 6 5 9 9 C 1.38012 * 119.62364 * 359.97438 * 8 7 6 10 10 C 1.41008 * 118.28065 * 359.75092 * 9 8 7 11 11 C 1.41016 * 120.70748 * 180.24318 * 10 9 8 12 12 H 1.07997 * 120.00227 * 154.91648 * 11 10 9 13 13 C 1.39951 * 120.00133 * 334.92839 * 11 10 9 14 14 N 1.30867 * 119.99672 * 343.52682 * 13 11 10 15 15 Si 1.86795 * 120.00247 * 163.53857 * 13 11 10 16 16 H 1.48498 * 109.47174 * 94.71001 * 15 13 11 17 17 H 1.48500 * 109.46931 * 214.70841 * 15 13 11 18 18 H 1.48500 * 109.47007 * 334.70989 * 15 13 11 19 19 C 1.52991 * 109.47425 * 120.00258 * 2 1 3 20 20 H 1.09000 * 109.50696 * 174.91654 * 19 2 1 21 21 C 1.53098 * 109.50851 * 295.00295 * 19 2 1 22 22 N 1.47014 * 109.26145 * 176.82534 * 21 19 2 23 23 C 1.47013 * 110.75405 * 301.38587 * 22 21 19 24 24 C 1.53107 * 109.25624 * 58.61204 * 23 22 21 25 25 O 1.43014 * 109.26061 * 303.15372 * 24 23 22 26 26 H 1.08995 * 109.46967 * 59.99997 * 1 2 3 27 27 H 1.09001 * 109.46688 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47146 * 299.98967 * 1 2 3 29 29 H 0.96998 * 120.00258 * 264.99661 * 4 2 1 30 30 H 1.07999 * 119.27460 * 179.97438 * 7 6 5 31 31 H 1.07995 * 120.19400 * 180.02562 * 8 7 6 32 32 H 1.07995 * 120.85990 * 179.97438 * 9 8 7 33 33 H 0.96998 * 120.00253 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.50758 * 296.75933 * 21 19 2 35 35 H 1.08998 * 109.50343 * 56.89256 * 21 19 2 36 36 H 1.00907 * 110.99571 * 65.15645 * 22 21 19 37 37 H 1.09001 * 109.50456 * 298.68009 * 23 22 21 38 38 H 1.08997 * 109.54325 * 178.56804 * 23 22 21 39 39 H 1.09001 * 109.50006 * 183.21805 * 24 23 22 40 40 H 1.08999 * 109.50718 * 63.09123 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1502 -0.0015 -2.3857 6 7 1.8355 1.2820 -2.4428 7 6 1.9470 1.9776 -3.5586 8 6 2.4012 1.3950 -4.7323 9 6 2.7466 0.0589 -4.7414 10 6 2.6278 -0.6701 -3.5403 11 6 2.9716 -2.0368 -3.4904 12 1 3.2699 -2.4848 -2.5541 13 6 2.9265 -2.8127 -4.6543 14 7 2.2728 -2.3818 -5.7029 15 14 3.7989 -4.4634 -4.7108 16 1 2.8378 -5.5432 -4.3711 17 1 4.3379 -4.6918 -6.0756 18 1 4.9146 -4.4674 -3.7308 19 6 2.0401 -0.7213 1.2491 20 1 3.1263 -0.8011 1.2053 21 6 1.6355 0.0686 2.4966 22 7 2.0615 -0.6672 3.6959 23 6 1.4551 -2.0061 3.7284 24 6 1.8616 -2.7752 2.4685 25 8 1.4673 -2.0301 1.3132 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 2.2491 -1.6316 -1.1528 30 1 1.6778 3.0235 -3.5580 31 1 2.4849 1.9837 -5.6338 32 1 3.1022 -0.4152 -5.6443 33 1 2.2411 -2.9196 -6.5095 34 1 2.1162 1.0468 2.4799 35 1 0.5529 0.1946 2.5123 36 1 3.0677 -0.7247 3.7464 37 1 0.3696 -1.9132 3.7638 38 1 1.8035 -2.5428 4.6108 39 1 1.3683 -3.7472 2.4606 40 1 2.9425 -2.9148 2.4601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170559445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:09 Heat of formation + Delta-G solvation = -11.243759 kcal Electronic energy + Delta-G solvation = -21977.119620 eV Core-core repulsion = 18791.306464 eV Total energy + Delta-G solvation = -3185.813156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.82818 -38.39352 -35.52135 -34.44770 -33.92561 -31.94039 -30.36850 -29.41682 -27.70989 -26.02282 -25.35662 -24.12549 -22.25374 -21.39730 -20.64156 -19.76864 -17.22585 -16.80795 -16.41737 -16.18446 -15.59466 -15.18001 -15.05806 -14.79718 -14.15425 -13.85030 -13.33568 -13.06298 -12.88886 -12.78710 -12.43181 -12.24681 -11.86396 -11.75259 -11.43172 -11.33735 -11.23513 -11.15682 -10.98299 -10.91576 -10.55537 -10.48236 -10.05301 -9.74293 -9.27876 -8.96983 -8.37076 -8.05647 -7.84787 -6.77557 -6.47336 -4.20173 2.76345 3.06991 3.10069 3.13526 3.26076 3.75751 3.94051 4.03221 4.31881 4.71488 4.76835 4.92477 5.04403 5.09602 5.19909 5.30790 5.47001 5.57132 5.72945 5.76378 5.87023 5.95170 6.02446 6.10966 6.30928 6.48287 6.53979 6.66703 6.80236 6.86033 6.93525 7.09868 7.15243 7.19273 7.23222 7.70011 7.84319 8.03621 8.32181 8.58997 8.70242 8.81764 9.05117 9.81608 10.23073 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.005799 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.542948 B = 4827.031866 C = 6219.678393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.180 3.820 3 H 0.090 0.910 4 N -0.721 5.721 5 C 0.306 3.694 6 N -0.533 5.533 7 C 0.002 3.998 8 C -0.193 4.193 9 C -0.126 4.126 10 C 0.031 3.969 11 C -0.455 4.455 12 H 0.074 0.926 13 C 0.076 3.924 14 N -0.799 5.799 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.276 1.276 18 H -0.262 1.262 19 C 0.045 3.955 20 H 0.059 0.941 21 C 0.027 3.973 22 N -0.684 5.684 23 C 0.020 3.980 24 C 0.021 3.979 25 O -0.365 6.365 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.405 0.595 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.279 0.721 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.339 0.661 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 -0.540 12.756 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.072 3.928 3 H 0.107 0.893 4 N -0.360 5.360 5 C 0.069 3.931 6 N -0.251 5.251 7 C -0.151 4.151 8 C -0.215 4.215 9 C -0.152 4.152 10 C 0.024 3.976 11 C -0.486 4.486 12 H 0.092 0.908 13 C -0.141 4.141 14 N -0.425 5.425 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.015 4.015 20 H 0.077 0.923 21 C -0.103 4.103 22 N -0.312 5.312 23 C -0.110 4.110 24 C -0.058 4.058 25 O -0.284 6.284 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.242 0.758 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.156 0.844 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.764 0.195 13.611 13.634 hybrid contribution 1.383 -1.997 -1.509 2.860 sum 0.620 -1.801 12.102 12.251 Atomic orbital electron populations 1.22142 0.96428 1.01849 1.01047 1.20468 0.93900 0.95802 0.82608 0.89265 1.43746 1.74566 1.11894 1.05796 1.18487 0.98691 0.88863 0.87086 1.66535 1.22217 1.06819 1.29501 1.21345 1.07394 0.97780 0.88627 1.21396 1.05988 0.96418 0.97730 1.21331 1.02949 0.91915 0.99009 1.17921 0.94779 0.94078 0.90788 1.19123 1.40719 0.93637 0.95120 0.90841 1.25795 0.93367 0.99844 0.95094 1.69815 1.30960 1.38083 1.03630 0.86350 0.80414 0.81705 0.78546 1.19701 1.20136 1.18630 1.23225 0.97139 0.84254 0.96872 0.92286 1.22731 1.02928 0.97388 0.87243 1.60920 1.13887 1.16837 1.39537 1.22669 1.01324 0.89457 0.97507 1.23247 0.99469 0.96109 0.86992 1.88152 1.71138 1.26658 1.42446 0.92063 0.92470 0.93357 0.75797 0.86585 0.88856 0.85845 0.91031 0.89457 0.89277 0.84368 0.89930 0.89936 0.88521 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.06 37.16 0.34 -2.30 16 2 C 0.18 3.12 2.46 -67.93 -0.17 2.95 16 3 H 0.09 1.62 7.53 -51.93 -0.39 1.23 16 4 N -0.72 -15.26 5.11 -53.49 -0.27 -15.53 16 5 C 0.31 7.55 7.49 -155.02 -1.16 6.39 16 6 N -0.53 -12.83 9.17 -11.87 -0.11 -12.94 16 7 C 0.00 0.05 11.17 -17.33 -0.19 -0.15 16 8 C -0.19 -4.59 10.08 -39.50 -0.40 -4.99 16 9 C -0.13 -3.29 8.79 -38.62 -0.34 -3.63 16 10 C 0.03 0.83 5.60 -106.47 -0.60 0.24 16 11 C -0.45 -11.78 8.51 -37.89 -0.32 -12.10 16 12 H 0.07 1.81 6.70 -52.49 -0.35 1.46 16 13 C 0.08 1.89 5.19 -17.32 -0.09 1.80 16 14 N -0.80 -20.67 10.96 55.55 0.61 -20.07 16 15 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 16 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 C 0.05 0.64 2.63 -26.68 -0.07 0.57 16 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 21 C 0.03 0.32 5.87 -3.71 -0.02 0.30 16 22 N -0.68 -7.17 6.93 -113.49 -0.79 -7.96 16 23 C 0.02 0.20 6.76 -3.71 -0.03 0.17 16 24 C 0.02 0.23 7.01 37.21 0.26 0.49 16 25 O -0.37 -5.43 9.33 -35.23 -0.33 -5.76 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 1.01 7.56 -51.93 -0.39 0.62 16 28 H 0.05 0.68 6.50 -51.93 -0.34 0.35 16 29 H 0.41 8.67 6.60 -40.82 -0.27 8.40 16 30 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 31 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.12 3.32 6.26 -52.49 -0.33 2.99 16 33 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.09 6.43 -51.93 -0.33 0.76 16 36 H 0.34 3.16 8.89 -39.29 -0.35 2.81 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -28.47 320.89 -9.56 -38.03 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -5.69 Total: 16.02 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.79 Total: -10.26 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.56 Total: -56.50 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.33 Total: -5.76 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.47 -9.56 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170559445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.789 kcal (2) G-P(sol) polarization free energy of solvation -28.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds