Wall clock time and date at job start Mon Mar 30 2020 02:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47452 * 2 1 4 4 N 1.46505 * 109.46811 * 239.99485 * 2 1 3 5 5 C 1.38370 * 119.99524 * 85.00643 * 4 2 1 6 6 C 1.39703 * 119.43207 * 359.72217 * 5 4 2 7 7 C 1.36563 * 119.49217 * 179.76542 * 6 5 4 8 8 C 1.41317 * 118.40908 * 0.50350 * 7 6 5 9 9 C 1.41204 * 120.57341 * 179.77029 * 8 7 6 10 10 H 1.08001 * 119.99208 * 330.32563 * 9 8 7 11 11 C 1.39872 * 120.00642 * 150.33325 * 9 8 7 12 12 N 1.30891 * 120.00120 * 161.77177 * 11 9 8 13 13 Si 1.86802 * 119.99346 * 341.77168 * 11 9 8 14 14 H 1.48503 * 109.47171 * 95.40954 * 13 11 9 15 15 H 1.48505 * 109.46754 * 215.40737 * 13 11 9 16 16 H 1.48493 * 109.47409 * 335.40650 * 13 11 9 17 17 C 1.40752 * 118.85809 * 359.74103 * 8 7 6 18 18 N 1.31487 * 120.36945 * 0.02562 * 17 8 7 19 19 C 1.53008 * 109.46989 * 120.00054 * 2 1 3 20 20 H 1.09000 * 109.50126 * 174.91181 * 19 2 1 21 21 C 1.53096 * 109.50507 * 294.99565 * 19 2 1 22 22 N 1.47008 * 109.25960 * 176.78416 * 21 19 2 23 23 C 1.47016 * 110.75150 * 301.38744 * 22 21 19 24 24 C 1.53102 * 109.26130 * 58.61428 * 23 22 21 25 25 O 1.43016 * 109.50549 * 54.78045 * 19 2 1 26 26 H 1.08999 * 109.47095 * 60.00259 * 1 2 3 27 27 H 1.09006 * 109.46926 * 300.00390 * 1 2 3 28 28 H 1.08994 * 109.47174 * 180.02562 * 1 2 3 29 29 H 0.96997 * 119.99787 * 264.99789 * 4 2 1 30 30 H 1.08006 * 120.25659 * 0.02562 * 6 5 4 31 31 H 1.08004 * 120.79498 * 180.22307 * 7 6 5 32 32 H 0.97006 * 119.99787 * 179.97438 * 12 11 9 33 33 H 1.08000 * 119.81354 * 179.97438 * 17 8 7 34 34 H 1.09003 * 109.50742 * 296.72123 * 21 19 2 35 35 H 1.09007 * 109.50537 * 56.80897 * 21 19 2 36 36 H 1.00902 * 111.00200 * 65.15934 * 22 21 19 37 37 H 1.09004 * 109.50789 * 178.54910 * 23 22 21 38 38 H 1.09000 * 109.50576 * 298.63498 * 23 22 21 39 39 H 1.09003 * 109.50191 * 63.08333 * 24 23 22 40 40 H 1.08993 * 109.50724 * 183.17355 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1962 5 6 2.1505 -0.0005 -2.3881 6 6 1.8094 1.3534 -2.4388 7 6 1.9440 2.0370 -3.6133 8 6 2.4179 1.3391 -4.7470 9 6 2.5698 1.9999 -5.9856 10 1 1.9281 2.8317 -6.2360 11 6 3.5512 1.5773 -6.8882 12 7 3.4758 1.9257 -8.1476 13 14 4.9695 0.5155 -6.2960 14 1 4.6500 -0.9150 -6.5341 15 1 6.2030 0.8777 -7.0395 16 1 5.1832 0.7399 -4.8437 17 6 2.7365 -0.0260 -4.6202 18 7 2.5935 -0.6375 -3.4650 19 6 2.0400 -0.7213 1.2493 20 1 3.1262 -0.8012 1.2054 21 6 1.6355 0.0688 2.4967 22 7 2.0605 -0.6675 3.6960 23 6 1.4531 -2.0059 3.7281 24 6 1.8595 -2.7753 2.4683 25 8 1.4662 -2.0297 1.3130 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.2490 -1.6319 -1.1525 30 1 1.4461 1.8565 -1.5549 31 1 1.6899 3.0849 -3.6754 32 1 4.1566 1.6328 -8.7735 33 1 3.0995 -0.5745 -5.4768 34 1 2.1169 1.0466 2.4802 35 1 0.5530 0.1962 2.5116 36 1 3.0665 -0.7257 3.7470 37 1 1.8014 -2.5427 4.6106 38 1 0.3677 -1.9123 3.7639 39 1 2.9404 -2.9155 2.4604 40 1 1.3662 -3.7472 2.4604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170559736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:21 Heat of formation + Delta-G solvation = -6.840348 kcal Electronic energy + Delta-G solvation = -21507.929698 eV Core-core repulsion = 18322.307488 eV Total energy + Delta-G solvation = -3185.622210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12236 -38.79021 -36.10268 -34.70681 -33.70341 -32.04577 -31.20107 -29.65343 -28.74210 -26.30701 -25.03621 -23.94996 -22.78130 -21.92805 -20.75868 -20.21889 -17.58840 -16.94482 -16.74888 -16.31981 -15.98720 -15.55081 -15.23273 -14.98204 -14.56108 -13.99354 -13.55521 -13.40048 -13.06464 -12.95181 -12.72417 -12.55442 -12.36095 -12.05760 -11.80485 -11.59692 -11.47044 -11.31154 -11.02621 -10.92608 -10.81095 -10.39577 -10.31766 -10.00254 -9.43422 -8.87807 -8.57438 -8.53989 -8.14773 -6.87687 -6.86591 -4.29262 2.53774 2.69230 3.16963 3.24421 3.35350 3.47426 3.79593 3.91050 4.01567 4.52085 4.60936 4.66354 4.78142 4.82989 4.94397 5.04435 5.17738 5.32616 5.43036 5.45986 5.53217 5.59596 5.73262 5.80036 5.89005 6.09147 6.17804 6.29640 6.45010 6.49999 6.53752 6.89440 6.91500 6.95189 7.06487 7.32352 7.33019 7.81592 8.06076 8.33548 8.43211 8.67631 8.81239 9.50200 10.15836 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.003759 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.639351 B = 7446.266431 C = 7753.821345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.085 0.915 4 N -0.735 5.735 5 C 0.282 3.718 6 C -0.189 4.189 7 C -0.136 4.136 8 C 0.011 3.989 9 C -0.445 4.445 10 H 0.089 0.911 11 C 0.083 3.917 12 N -0.815 5.815 13 Si 0.905 3.095 14 H -0.268 1.268 15 H -0.289 1.289 16 H -0.250 1.250 17 C 0.007 3.993 18 N -0.510 5.510 19 C 0.047 3.953 20 H 0.062 0.938 21 C 0.026 3.974 22 N -0.683 5.683 23 C 0.020 3.980 24 C 0.021 3.979 25 O -0.367 6.367 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.394 0.606 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.284 0.716 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.340 0.660 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -5.192 20.129 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.103 0.897 4 N -0.373 5.373 5 C 0.049 3.951 6 C -0.213 4.213 7 C -0.163 4.163 8 C 0.005 3.995 9 C -0.475 4.475 10 H 0.107 0.893 11 C -0.134 4.134 12 N -0.440 5.440 13 Si 0.731 3.269 14 H -0.194 1.194 15 H -0.217 1.217 16 H -0.174 1.174 17 C -0.152 4.152 18 N -0.225 5.225 19 C -0.013 4.013 20 H 0.080 0.920 21 C -0.104 4.104 22 N -0.311 5.311 23 C -0.110 4.110 24 C -0.058 4.058 25 O -0.285 6.285 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.229 0.771 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.158 0.842 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.084 -5.642 20.266 21.140 hybrid contribution 1.241 -0.333 -0.539 1.394 sum -0.843 -5.975 19.727 20.629 Atomic orbital electron populations 1.22277 0.95961 1.02743 1.01467 1.20585 0.94104 0.95559 0.82712 0.89680 1.43642 1.75907 1.11970 1.05824 1.17756 1.01951 0.88841 0.86506 1.20777 1.07949 0.93945 0.98607 1.21007 1.04888 0.98549 0.91842 1.18490 0.94693 0.92554 0.93758 1.19201 1.15825 1.15263 0.97233 0.89271 1.26046 0.99199 0.94337 0.93820 1.69718 1.32899 1.38477 1.02950 0.86429 0.79695 0.79882 0.80861 1.19382 1.21652 1.17356 1.22249 1.07353 0.92192 0.93389 1.66549 1.16793 1.39974 0.99182 1.23154 0.97288 0.84472 0.96393 0.91993 1.22746 1.03035 0.97437 0.87174 1.60893 1.14010 1.16897 1.39273 1.22680 1.01393 0.89388 0.97528 1.23264 0.99556 0.96088 0.86852 1.88127 1.71158 1.26547 1.42692 0.92025 0.92613 0.91777 0.77147 0.87755 0.87157 0.90607 0.85151 0.89329 0.89165 0.84216 0.89760 0.89824 0.93340 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 8.94 37.16 0.33 -1.81 16 2 C 0.18 2.40 2.13 -67.92 -0.14 2.25 16 3 H 0.09 1.12 6.42 -51.93 -0.33 0.79 16 4 N -0.74 -12.84 5.20 -53.86 -0.28 -13.12 16 5 C 0.28 6.09 7.62 -155.13 -1.18 4.91 16 6 C -0.19 -3.93 8.72 -39.64 -0.35 -4.27 16 7 C -0.14 -3.13 9.88 -39.02 -0.39 -3.51 16 8 C 0.01 0.27 5.12 -106.65 -0.55 -0.27 16 9 C -0.44 -12.10 9.58 -37.84 -0.36 -12.47 16 10 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 11 C 0.08 2.22 5.41 -17.34 -0.09 2.12 16 12 N -0.82 -22.00 13.93 55.54 0.77 -21.23 16 13 Si 0.90 21.28 24.52 -169.99 -4.17 17.11 16 14 H -0.27 -6.18 6.71 56.52 0.38 -5.80 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.25 -6.14 6.86 56.52 0.39 -5.75 16 17 C 0.01 0.17 8.37 -16.75 -0.14 0.03 16 18 N -0.51 -12.48 10.37 -11.79 -0.12 -12.60 16 19 C 0.05 0.52 2.63 -26.68 -0.07 0.45 16 20 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 21 C 0.03 0.24 5.87 -3.72 -0.02 0.22 16 22 N -0.68 -5.69 6.93 -113.49 -0.79 -6.48 16 23 C 0.02 0.15 6.76 -3.71 -0.03 0.13 16 24 C 0.02 0.18 7.01 37.21 0.26 0.44 16 25 O -0.37 -4.34 9.33 -35.23 -0.33 -4.67 16 26 H 0.06 0.90 7.59 -51.93 -0.39 0.50 16 27 H 0.05 0.58 6.50 -51.93 -0.34 0.25 16 28 H 0.06 0.89 7.55 -51.93 -0.39 0.50 16 29 H 0.39 6.95 8.51 -40.82 -0.35 6.61 16 30 H 0.10 1.82 5.98 -52.48 -0.31 1.50 16 31 H 0.11 2.32 8.06 -52.48 -0.42 1.90 16 32 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 33 H 0.13 3.34 4.72 -52.49 -0.25 3.10 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.85 6.43 -51.93 -0.33 0.52 16 36 H 0.34 2.48 8.89 -39.29 -0.35 2.13 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -29.49 314.85 -8.49 -37.99 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.60 Total: 10.04 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.72 Total: -11.78 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.42 Total: -53.43 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.33 Total: -4.67 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.17 Total: 17.11 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.49 -8.49 -37.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170559736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.146 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds