Wall clock time and date at job start Mon Mar 30 2020 02:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47452 * 2 1 4 4 N 1.46505 * 109.46811 * 239.99485 * 2 1 3 5 5 C 1.38370 * 119.99524 * 85.00643 * 4 2 1 6 6 C 1.39703 * 119.43207 * 359.72217 * 5 4 2 7 7 C 1.36563 * 119.49217 * 179.76542 * 6 5 4 8 8 C 1.41317 * 118.40908 * 0.50350 * 7 6 5 9 9 C 1.41204 * 120.57341 * 179.77029 * 8 7 6 10 10 H 1.08001 * 119.99208 * 330.32563 * 9 8 7 11 11 C 1.39872 * 120.00642 * 150.33325 * 9 8 7 12 12 N 1.30891 * 120.00120 * 161.77177 * 11 9 8 13 13 Si 1.86802 * 119.99346 * 341.77168 * 11 9 8 14 14 H 1.48503 * 109.47171 * 95.40954 * 13 11 9 15 15 H 1.48505 * 109.46754 * 215.40737 * 13 11 9 16 16 H 1.48493 * 109.47409 * 335.40650 * 13 11 9 17 17 C 1.40752 * 118.85809 * 359.74103 * 8 7 6 18 18 N 1.31487 * 120.36945 * 0.02562 * 17 8 7 19 19 C 1.53008 * 109.46989 * 120.00054 * 2 1 3 20 20 H 1.09000 * 109.50126 * 174.91181 * 19 2 1 21 21 C 1.53096 * 109.50507 * 294.99565 * 19 2 1 22 22 N 1.47008 * 109.25960 * 176.78416 * 21 19 2 23 23 C 1.47016 * 110.75150 * 301.38744 * 22 21 19 24 24 C 1.53102 * 109.26130 * 58.61428 * 23 22 21 25 25 O 1.43016 * 109.50549 * 54.78045 * 19 2 1 26 26 H 1.08999 * 109.47095 * 60.00259 * 1 2 3 27 27 H 1.09006 * 109.46926 * 300.00390 * 1 2 3 28 28 H 1.08994 * 109.47174 * 180.02562 * 1 2 3 29 29 H 0.96997 * 119.99787 * 264.99789 * 4 2 1 30 30 H 1.08006 * 120.25659 * 0.02562 * 6 5 4 31 31 H 1.08004 * 120.79498 * 180.22307 * 7 6 5 32 32 H 0.97006 * 119.99787 * 179.97438 * 12 11 9 33 33 H 1.08000 * 119.81354 * 179.97438 * 17 8 7 34 34 H 1.09003 * 109.50742 * 296.72123 * 21 19 2 35 35 H 1.09007 * 109.50537 * 56.80897 * 21 19 2 36 36 H 1.00902 * 111.00200 * 65.15934 * 22 21 19 37 37 H 1.09004 * 109.50789 * 178.54910 * 23 22 21 38 38 H 1.09000 * 109.50576 * 298.63498 * 23 22 21 39 39 H 1.09003 * 109.50191 * 63.08333 * 24 23 22 40 40 H 1.08993 * 109.50724 * 183.17355 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1962 5 6 2.1505 -0.0005 -2.3881 6 6 1.8094 1.3534 -2.4388 7 6 1.9440 2.0370 -3.6133 8 6 2.4179 1.3391 -4.7470 9 6 2.5698 1.9999 -5.9856 10 1 1.9281 2.8317 -6.2360 11 6 3.5512 1.5773 -6.8882 12 7 3.4758 1.9257 -8.1476 13 14 4.9695 0.5155 -6.2960 14 1 4.6500 -0.9150 -6.5341 15 1 6.2030 0.8777 -7.0395 16 1 5.1832 0.7399 -4.8437 17 6 2.7365 -0.0260 -4.6202 18 7 2.5935 -0.6375 -3.4650 19 6 2.0400 -0.7213 1.2493 20 1 3.1262 -0.8012 1.2054 21 6 1.6355 0.0688 2.4967 22 7 2.0605 -0.6675 3.6960 23 6 1.4531 -2.0059 3.7281 24 6 1.8595 -2.7753 2.4683 25 8 1.4662 -2.0297 1.3130 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.2490 -1.6319 -1.1525 30 1 1.4461 1.8565 -1.5549 31 1 1.6899 3.0849 -3.6754 32 1 4.1566 1.6328 -8.7735 33 1 3.0995 -0.5745 -5.4768 34 1 2.1169 1.0466 2.4802 35 1 0.5530 0.1962 2.5116 36 1 3.0665 -0.7257 3.7470 37 1 1.8014 -2.5427 4.6106 38 1 0.3677 -1.9123 3.7639 39 1 2.9404 -2.9155 2.4604 40 1 1.3662 -3.7472 2.4604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170559736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:21 Heat of formation + Delta-G solvation = -29.233089 kcal Electronic energy + Delta-G solvation = -21508.900720 eV Core-core repulsion = 18322.307488 eV Total energy + Delta-G solvation = -3186.593232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.08853 -40.40951 -37.43652 -35.56797 -35.40260 -33.54926 -32.83524 -31.10669 -29.98574 -27.15962 -26.56108 -25.00664 -24.48106 -23.03173 -22.30027 -21.31608 -19.48122 -18.39899 -17.86950 -17.29620 -17.23606 -16.73321 -16.23705 -16.06609 -15.87878 -15.47593 -15.10005 -14.96471 -14.58951 -14.32812 -13.89957 -13.80553 -13.62246 -13.52002 -13.03845 -12.82695 -12.72556 -12.54877 -12.31959 -12.15687 -12.00942 -11.88482 -11.84620 -11.32640 -11.10854 -10.61465 -10.35465 -10.00836 -9.27181 -8.84966 -8.59146 -6.29209 0.68036 0.83831 1.26940 1.37915 1.45503 2.10916 2.45441 2.66474 2.73870 3.21327 3.55054 3.76024 3.79263 3.95822 3.99357 4.12290 4.23686 4.34693 4.36785 4.41449 4.43701 4.55928 4.64435 4.71867 4.77817 4.83743 4.96655 4.99783 5.07334 5.10323 5.22682 5.41915 5.48631 5.53940 5.83402 5.96781 6.14897 6.19852 6.32691 6.52150 6.58336 6.79433 6.99800 7.68587 8.24268 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.003759 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.639351 B = 7446.266431 C = 7753.821345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.170 3.830 3 H 0.096 0.904 4 N -0.727 5.727 5 C 0.299 3.701 6 C -0.185 4.185 7 C -0.130 4.130 8 C -0.015 4.015 9 C -0.475 4.475 10 H 0.063 0.937 11 C 0.051 3.949 12 N -0.854 5.854 13 Si 0.957 3.043 14 H -0.265 1.265 15 H -0.272 1.272 16 H -0.266 1.266 17 C -0.007 4.007 18 N -0.538 5.538 19 C 0.055 3.945 20 H 0.058 0.942 21 C 0.033 3.967 22 N -0.685 5.685 23 C 0.024 3.976 24 C 0.017 3.983 25 O -0.390 6.390 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.394 0.606 30 H 0.147 0.853 31 H 0.128 0.872 32 H 0.292 0.708 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.348 0.652 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 -5.617 23.618 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.114 0.886 4 N -0.364 5.364 5 C 0.064 3.936 6 C -0.208 4.208 7 C -0.157 4.157 8 C -0.020 4.020 9 C -0.506 4.506 10 H 0.081 0.919 11 C -0.162 4.162 12 N -0.482 5.482 13 Si 0.782 3.218 14 H -0.191 1.191 15 H -0.199 1.199 16 H -0.191 1.191 17 C -0.162 4.162 18 N -0.254 5.254 19 C -0.005 4.005 20 H 0.076 0.924 21 C -0.098 4.098 22 N -0.314 5.314 23 C -0.105 4.105 24 C -0.061 4.061 25 O -0.310 6.310 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.228 0.772 30 H 0.164 0.836 31 H 0.146 0.854 32 H 0.102 0.898 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.166 0.834 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.057 -6.077 23.780 24.630 hybrid contribution 1.094 -0.284 -1.281 1.709 sum -0.962 -6.361 22.499 23.401 Atomic orbital electron populations 1.22187 0.95195 1.02167 1.02101 1.20925 0.94576 0.96113 0.81990 0.88597 1.43920 1.74723 1.12082 1.05627 1.18254 0.98904 0.89517 0.86938 1.21125 1.06823 0.93590 0.99296 1.21343 1.03049 0.99562 0.91760 1.18579 0.96327 0.92894 0.94211 1.19173 1.16894 1.15674 0.98873 0.91928 1.26574 1.00602 0.95280 0.93794 1.69739 1.34251 1.40508 1.03698 0.85619 0.78036 0.78749 0.79349 1.19062 1.19854 1.19077 1.22148 1.08070 0.92160 0.93870 1.66599 1.18725 1.40445 0.99658 1.23036 0.96820 0.84651 0.95994 0.92396 1.22702 1.03079 0.97706 0.86281 1.60911 1.14673 1.17276 1.38502 1.22683 1.01100 0.89065 0.97687 1.23439 0.99954 0.96340 0.86327 1.88087 1.71547 1.26984 1.44354 0.93638 0.89691 0.92986 0.77154 0.83592 0.85421 0.89793 0.86064 0.88079 0.89261 0.83424 0.87812 0.90329 0.92953 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 8.94 71.98 0.64 -2.93 16 2 C 0.17 4.01 2.13 44.99 0.10 4.10 16 3 H 0.10 2.10 6.42 -2.39 -0.02 2.09 16 4 N -0.73 -23.60 5.20 -324.32 -1.69 -25.28 16 5 C 0.30 12.35 7.62 133.32 1.02 13.36 16 6 C -0.18 -7.18 8.72 22.23 0.19 -6.98 16 7 C -0.13 -5.84 9.88 22.64 0.22 -5.62 16 8 C -0.01 -0.76 5.12 -21.18 -0.11 -0.87 16 9 C -0.47 -26.82 9.58 23.39 0.22 -26.59 16 10 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 11 C 0.05 2.79 5.41 85.23 0.46 3.25 16 12 N -0.85 -47.67 13.93 21.82 0.30 -47.36 16 13 Si 0.96 44.86 24.52 68.60 1.68 46.55 16 14 H -0.26 -12.10 6.71 99.48 0.67 -11.43 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.27 -13.03 6.86 99.48 0.68 -12.35 16 17 C -0.01 -0.34 8.37 85.36 0.71 0.38 16 18 N -0.54 -25.93 10.37 -191.21 -1.98 -27.91 16 19 C 0.06 1.05 2.63 30.63 0.08 1.13 16 20 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 21 C 0.03 0.48 5.87 86.31 0.51 0.98 16 22 N -0.68 -9.08 6.93 -512.98 -3.55 -12.64 16 23 C 0.02 0.29 6.76 86.32 0.58 0.87 16 24 C 0.02 0.25 7.01 72.02 0.50 0.76 16 25 O -0.39 -8.25 9.33 -148.98 -1.39 -9.64 16 26 H 0.04 1.18 7.59 -2.39 -0.02 1.16 16 27 H 0.08 1.44 6.50 -2.38 -0.02 1.43 16 28 H 0.05 1.32 7.55 -2.39 -0.02 1.30 16 29 H 0.39 13.11 8.51 -92.71 -0.79 12.32 16 30 H 0.15 4.43 5.98 -2.91 -0.02 4.42 16 31 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 32 H 0.29 14.69 8.30 -92.70 -0.77 13.92 16 33 H 0.12 6.35 4.72 -2.91 -0.01 6.34 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.34 6.43 -2.38 -0.02 1.32 16 36 H 0.35 3.88 8.89 -89.69 -0.80 3.08 16 37 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -64.77 314.85 -2.07 -66.84 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.58 Total: 27.60 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 5.14 Total: -18.15 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -6.92 Total: -113.20 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -1.39 Total: -9.64 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.68 Total: 46.55 kcal Total: -64.77 -2.07 -66.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170559736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.602 kcal (2) G-P(sol) polarization free energy of solvation -64.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds