Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46918 * 2 1 4 4 N 1.46498 * 109.47137 * 239.99997 * 2 1 3 5 5 C 1.38376 * 119.99644 * 84.99940 * 4 2 1 6 6 C 1.39700 * 119.43206 * 359.72628 * 5 4 2 7 7 C 1.36567 * 119.49559 * 179.76410 * 6 5 4 8 8 C 1.41326 * 118.40130 * 0.50036 * 7 6 5 9 9 C 1.41214 * 120.56554 * 179.76656 * 8 7 6 10 10 H 1.07999 * 119.99289 * 203.61905 * 9 8 7 11 11 C 1.39865 * 120.00068 * 23.62278 * 9 8 7 12 12 N 1.30898 * 120.00047 * 17.65714 * 11 9 8 13 13 Si 1.86802 * 120.00134 * 197.65582 * 11 9 8 14 14 H 1.48500 * 109.46758 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46864 * 120.00080 * 13 11 9 16 16 H 1.48497 * 109.47086 * 240.00245 * 13 11 9 17 17 C 1.40753 * 118.86259 * 359.74642 * 8 7 6 18 18 N 1.31486 * 120.36861 * 359.97438 * 17 8 7 19 19 C 1.53000 * 109.46961 * 120.00206 * 2 1 3 20 20 H 1.09003 * 109.54210 * 300.10312 * 19 2 1 21 21 C 1.53096 * 109.50433 * 180.02562 * 19 2 1 22 22 N 1.47012 * 109.29510 * 183.23602 * 21 19 2 23 23 C 1.47013 * 110.75088 * 58.59449 * 22 21 19 24 24 C 1.53097 * 109.25937 * 301.38526 * 23 22 21 25 25 O 1.43014 * 109.54649 * 60.19838 * 19 2 1 26 26 H 1.09000 * 109.46918 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47070 * 299.99750 * 1 2 3 28 28 H 1.08992 * 109.47144 * 59.99929 * 1 2 3 29 29 H 0.96993 * 120.00302 * 264.99993 * 4 2 1 30 30 H 1.08004 * 120.25245 * 0.02562 * 6 5 4 31 31 H 1.07993 * 120.80341 * 180.27017 * 7 6 5 32 32 H 0.97004 * 120.00299 * 180.02562 * 12 11 9 33 33 H 1.07997 * 119.81145 * 180.02562 * 17 8 7 34 34 H 1.09005 * 109.50857 * 63.28011 * 21 19 2 35 35 H 1.09001 * 109.50910 * 303.19358 * 21 19 2 36 36 H 1.00906 * 110.99824 * 182.36687 * 22 21 19 37 37 H 1.08999 * 109.50733 * 61.31769 * 23 22 21 38 38 H 1.09004 * 109.50922 * 181.45105 * 23 22 21 39 39 H 1.08997 * 109.51040 * 176.78436 * 24 23 22 40 40 H 1.09004 * 109.50276 * 296.91316 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1505 -0.0002 -2.3881 6 6 1.8093 1.3535 -2.4387 7 6 1.9438 2.0373 -3.6132 8 6 2.4178 1.3394 -4.7470 9 6 2.5696 2.0004 -5.9856 10 1 2.5551 1.4341 -6.9051 11 6 2.7388 3.3883 -6.0215 12 7 3.1002 4.0318 -4.9404 13 14 2.4491 4.3237 -7.6123 14 1 2.0509 3.3721 -8.6805 15 1 1.3677 5.3211 -7.4100 16 1 3.6980 5.0215 -8.0106 17 6 2.7365 -0.0258 -4.6203 18 7 2.5945 -0.6371 -3.4648 19 6 2.0400 -0.7213 1.2492 20 1 1.6758 -0.2095 2.1400 21 6 3.5710 -0.7212 1.2504 22 7 4.0559 -1.4819 2.4111 23 6 3.5520 -2.8625 2.3766 24 6 2.0213 -2.8412 2.3653 25 8 1.5680 -2.0713 1.2485 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.2491 -1.6317 -1.1526 30 1 1.4460 1.8566 -1.5548 31 1 1.6905 3.0853 -3.6751 32 1 3.2172 4.9944 -4.9651 33 1 3.1004 -0.5739 -5.4767 34 1 3.9349 0.3046 1.3096 35 1 3.9357 -1.1844 0.3335 36 1 5.0638 -1.4659 2.4585 37 1 3.9157 -3.3604 1.4777 38 1 3.9020 -3.3999 3.2580 39 1 1.6436 -3.8603 2.2821 40 1 1.6567 -2.3916 3.2889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170559737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -8.882541 kcal Electronic energy + Delta-G solvation = -21592.705846 eV Core-core repulsion = 18406.995079 eV Total energy + Delta-G solvation = -3185.710766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77889 -38.42485 -35.85865 -34.63792 -33.79479 -31.44739 -30.58232 -29.57214 -28.48117 -26.59994 -24.77455 -23.91288 -22.17384 -21.40774 -20.80638 -19.77254 -17.23779 -17.12411 -16.74931 -16.13386 -15.13329 -15.03589 -14.86677 -14.60624 -14.40456 -14.14977 -13.75116 -13.59902 -13.12698 -12.93611 -12.39784 -12.01494 -11.89593 -11.84932 -11.52169 -11.46379 -11.39926 -11.14270 -11.03110 -10.82526 -10.54130 -10.46423 -9.75164 -9.72582 -9.38875 -8.76312 -8.60999 -8.20476 -7.96401 -6.80228 -6.56553 -4.15192 2.77767 3.01052 3.10888 3.16394 3.31610 3.65637 3.94419 3.98051 4.18469 4.72811 4.75884 4.82462 4.94309 5.04764 5.22561 5.25872 5.49867 5.52176 5.64873 5.67948 5.77794 5.84102 5.95877 5.98255 6.12125 6.25838 6.51794 6.62730 6.66858 6.68303 6.90554 7.05837 7.12383 7.20824 7.36316 7.48375 7.80824 7.95281 8.32785 8.48785 8.72343 8.88004 8.97419 9.77210 10.25897 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037386 B = 0.003651 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.768075 B = 7668.140538 C = 7703.186891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.086 0.914 4 N -0.733 5.733 5 C 0.283 3.717 6 C -0.206 4.206 7 C -0.093 4.093 8 C 0.028 3.972 9 C -0.457 4.457 10 H 0.077 0.923 11 C 0.074 3.926 12 N -0.807 5.807 13 Si 0.906 3.094 14 H -0.261 1.261 15 H -0.274 1.274 16 H -0.276 1.276 17 C 0.011 3.989 18 N -0.524 5.524 19 C 0.091 3.909 20 H 0.072 0.928 21 C 0.025 3.975 22 N -0.690 5.690 23 C 0.018 3.982 24 C 0.064 3.936 25 O -0.373 6.373 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.392 0.608 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.278 0.722 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.345 0.655 37 H 0.041 0.959 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -6.356 13.409 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.067 3.933 3 H 0.103 0.897 4 N -0.372 5.372 5 C 0.050 3.950 6 C -0.230 4.230 7 C -0.120 4.120 8 C 0.023 3.977 9 C -0.489 4.489 10 H 0.095 0.905 11 C -0.142 4.142 12 N -0.434 5.434 13 Si 0.731 3.269 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.202 1.202 17 C -0.147 4.147 18 N -0.239 5.239 19 C 0.032 3.968 20 H 0.090 0.910 21 C -0.105 4.105 22 N -0.322 5.322 23 C -0.112 4.112 24 C -0.014 4.014 25 O -0.292 6.292 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.226 0.774 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.163 0.837 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.406 -6.686 13.881 15.471 hybrid contribution 0.626 0.846 -1.198 1.594 sum -0.781 -5.840 12.683 13.985 Atomic orbital electron populations 1.22229 0.96055 1.02531 1.01472 1.20658 0.93889 0.95745 0.83028 0.89659 1.43599 1.75948 1.11743 1.05881 1.17775 1.02254 0.88715 0.86260 1.20832 1.09567 0.93729 0.98865 1.21308 0.98472 1.00198 0.91986 1.18356 0.92702 0.92468 0.94192 1.19351 1.44310 0.91726 0.93490 0.90460 1.25834 0.92360 0.98211 0.97770 1.69828 1.34037 1.09947 1.29542 0.86296 0.78648 0.79628 0.82328 1.18486 1.19890 1.20170 1.22178 1.06092 0.93439 0.92950 1.66536 1.18073 1.39988 0.99318 1.22490 0.92358 0.83584 0.98362 0.91013 1.22612 0.96215 0.99505 0.92142 1.60593 1.15513 1.12919 1.43166 1.22616 0.97071 0.90186 1.01332 1.22609 0.92527 0.96342 0.89875 1.88031 1.72474 1.22825 1.45843 0.91927 0.92884 0.91952 0.77380 0.88438 0.85542 0.91157 0.85708 0.89648 0.92985 0.83739 0.94120 0.89993 0.88688 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.24 37.16 0.34 -2.01 16 2 C 0.17 2.63 2.09 -67.93 -0.14 2.49 16 3 H 0.09 1.31 6.42 -51.93 -0.33 0.98 16 4 N -0.73 -13.51 4.45 -53.86 -0.24 -13.75 16 5 C 0.28 6.43 7.62 -155.12 -1.18 5.24 16 6 C -0.21 -4.76 8.72 -39.64 -0.35 -5.10 16 7 C -0.09 -2.39 8.75 -39.01 -0.34 -2.73 16 8 C 0.03 0.75 5.59 -106.64 -0.60 0.15 16 9 C -0.46 -12.13 9.07 -37.84 -0.34 -12.47 16 10 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 11 C 0.07 1.86 5.17 -17.34 -0.09 1.77 16 12 N -0.81 -20.80 10.92 55.54 0.61 -20.19 16 13 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 14 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 17 C 0.01 0.29 10.97 -16.75 -0.18 0.11 16 18 N -0.52 -12.98 10.37 -11.79 -0.12 -13.10 16 19 C 0.09 1.18 2.55 -26.68 -0.07 1.11 16 20 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 21 C 0.02 0.31 5.93 -3.71 -0.02 0.29 16 22 N -0.69 -7.39 6.92 -113.50 -0.79 -8.17 16 23 C 0.02 0.17 6.76 -3.71 -0.03 0.15 16 24 C 0.06 0.65 7.01 37.21 0.26 0.91 16 25 O -0.37 -4.96 9.31 -35.23 -0.33 -5.28 16 26 H 0.06 0.93 7.69 -51.93 -0.40 0.53 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.00 7.59 -51.93 -0.39 0.61 16 29 H 0.39 7.29 8.11 -40.82 -0.33 6.96 16 30 H 0.10 1.99 5.98 -52.48 -0.31 1.68 16 31 H 0.13 3.33 6.19 -52.49 -0.32 3.01 16 32 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 33 H 0.13 2.98 8.06 -52.49 -0.42 2.56 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.77 7.36 -51.93 -0.38 0.38 16 36 H 0.34 3.18 8.90 -39.29 -0.35 2.83 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -28.58 321.87 -9.54 -38.12 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -5.76 Total: 13.91 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.74 Total: -10.11 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.54 Total: -55.21 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.33 Total: -5.28 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.58 -9.54 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170559737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.242 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds