Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46918 * 2 1 4 4 N 1.46498 * 109.47137 * 239.99997 * 2 1 3 5 5 C 1.38376 * 119.99644 * 84.99940 * 4 2 1 6 6 C 1.39700 * 119.43206 * 359.72628 * 5 4 2 7 7 C 1.36567 * 119.49559 * 179.76410 * 6 5 4 8 8 C 1.41326 * 118.40130 * 0.50036 * 7 6 5 9 9 C 1.41214 * 120.56554 * 179.76656 * 8 7 6 10 10 H 1.07999 * 119.99289 * 203.61905 * 9 8 7 11 11 C 1.39865 * 120.00068 * 23.62278 * 9 8 7 12 12 N 1.30898 * 120.00047 * 17.65714 * 11 9 8 13 13 Si 1.86802 * 120.00134 * 197.65582 * 11 9 8 14 14 H 1.48500 * 109.46758 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46864 * 120.00080 * 13 11 9 16 16 H 1.48497 * 109.47086 * 240.00245 * 13 11 9 17 17 C 1.40753 * 118.86259 * 359.74642 * 8 7 6 18 18 N 1.31486 * 120.36861 * 359.97438 * 17 8 7 19 19 C 1.53000 * 109.46961 * 120.00206 * 2 1 3 20 20 H 1.09003 * 109.54210 * 300.10312 * 19 2 1 21 21 C 1.53096 * 109.50433 * 180.02562 * 19 2 1 22 22 N 1.47012 * 109.29510 * 183.23602 * 21 19 2 23 23 C 1.47013 * 110.75088 * 58.59449 * 22 21 19 24 24 C 1.53097 * 109.25937 * 301.38526 * 23 22 21 25 25 O 1.43014 * 109.54649 * 60.19838 * 19 2 1 26 26 H 1.09000 * 109.46918 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47070 * 299.99750 * 1 2 3 28 28 H 1.08992 * 109.47144 * 59.99929 * 1 2 3 29 29 H 0.96993 * 120.00302 * 264.99993 * 4 2 1 30 30 H 1.08004 * 120.25245 * 0.02562 * 6 5 4 31 31 H 1.07993 * 120.80341 * 180.27017 * 7 6 5 32 32 H 0.97004 * 120.00299 * 180.02562 * 12 11 9 33 33 H 1.07997 * 119.81145 * 180.02562 * 17 8 7 34 34 H 1.09005 * 109.50857 * 63.28011 * 21 19 2 35 35 H 1.09001 * 109.50910 * 303.19358 * 21 19 2 36 36 H 1.00906 * 110.99824 * 182.36687 * 22 21 19 37 37 H 1.08999 * 109.50733 * 61.31769 * 23 22 21 38 38 H 1.09004 * 109.50922 * 181.45105 * 23 22 21 39 39 H 1.08997 * 109.51040 * 176.78436 * 24 23 22 40 40 H 1.09004 * 109.50276 * 296.91316 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1505 -0.0002 -2.3881 6 6 1.8093 1.3535 -2.4387 7 6 1.9438 2.0373 -3.6132 8 6 2.4178 1.3394 -4.7470 9 6 2.5696 2.0004 -5.9856 10 1 2.5551 1.4341 -6.9051 11 6 2.7388 3.3883 -6.0215 12 7 3.1002 4.0318 -4.9404 13 14 2.4491 4.3237 -7.6123 14 1 2.0509 3.3721 -8.6805 15 1 1.3677 5.3211 -7.4100 16 1 3.6980 5.0215 -8.0106 17 6 2.7365 -0.0258 -4.6203 18 7 2.5945 -0.6371 -3.4648 19 6 2.0400 -0.7213 1.2492 20 1 1.6758 -0.2095 2.1400 21 6 3.5710 -0.7212 1.2504 22 7 4.0559 -1.4819 2.4111 23 6 3.5520 -2.8625 2.3766 24 6 2.0213 -2.8412 2.3653 25 8 1.5680 -2.0713 1.2485 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.2491 -1.6317 -1.1526 30 1 1.4460 1.8566 -1.5548 31 1 1.6905 3.0853 -3.6751 32 1 3.2172 4.9944 -4.9651 33 1 3.1004 -0.5739 -5.4767 34 1 3.9349 0.3046 1.3096 35 1 3.9357 -1.1844 0.3335 36 1 5.0638 -1.4659 2.4585 37 1 3.9157 -3.3604 1.4777 38 1 3.9020 -3.3999 3.2580 39 1 1.6436 -3.8603 2.2821 40 1 1.6567 -2.3916 3.2889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170559737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -28.395734 kcal Electronic energy + Delta-G solvation = -21593.552001 eV Core-core repulsion = 18406.995079 eV Total energy + Delta-G solvation = -3186.556922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.91982 -40.10903 -37.28849 -35.70011 -35.47576 -32.90864 -32.42387 -30.83405 -30.14383 -27.57067 -26.57678 -24.90645 -23.93869 -23.06298 -22.04799 -21.00207 -19.17851 -18.46900 -17.94887 -17.38170 -16.81882 -16.51347 -15.86062 -15.70782 -15.55633 -15.34823 -15.26600 -15.04880 -14.63383 -14.41672 -13.80190 -13.67012 -13.48436 -13.42991 -12.96088 -12.80497 -12.77137 -12.55482 -12.35211 -12.21235 -11.90569 -11.60286 -11.50853 -11.19602 -10.67617 -10.45504 -10.14851 -9.90005 -9.55363 -8.66089 -8.38110 -6.11267 0.90582 1.13764 1.42104 1.55372 1.57879 2.25601 2.56631 2.80287 2.85104 3.07610 3.75459 3.80875 3.89717 4.05169 4.17583 4.19431 4.28353 4.38922 4.45371 4.57271 4.62721 4.65093 4.76544 4.82718 4.87827 4.93860 4.97426 5.00155 5.06947 5.29678 5.40354 5.43708 5.62294 5.79118 5.89991 5.99675 6.20959 6.27221 6.51473 6.66269 6.85051 6.94086 7.16571 7.87577 8.40468 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037386 B = 0.003651 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.768075 B = 7668.140538 C = 7703.186891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.169 3.831 3 H 0.085 0.915 4 N -0.722 5.722 5 C 0.291 3.709 6 C -0.205 4.205 7 C -0.107 4.107 8 C -0.002 4.002 9 C -0.493 4.493 10 H 0.075 0.925 11 C 0.035 3.965 12 N -0.836 5.836 13 Si 0.981 3.019 14 H -0.260 1.260 15 H -0.265 1.265 16 H -0.268 1.268 17 C -0.004 4.004 18 N -0.541 5.541 19 C 0.100 3.900 20 H 0.090 0.910 21 C 0.028 3.972 22 N -0.687 5.687 23 C 0.018 3.982 24 C 0.058 3.942 25 O -0.393 6.393 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.392 0.608 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.286 0.714 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.026 0.974 36 H 0.353 0.647 37 H 0.028 0.972 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 -6.288 14.972 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.062 3.938 3 H 0.103 0.897 4 N -0.360 5.360 5 C 0.056 3.944 6 C -0.229 4.229 7 C -0.134 4.134 8 C -0.007 4.007 9 C -0.524 4.524 10 H 0.093 0.907 11 C -0.178 4.178 12 N -0.463 5.463 13 Si 0.802 3.198 14 H -0.184 1.184 15 H -0.190 1.190 16 H -0.193 1.193 17 C -0.161 4.161 18 N -0.257 5.257 19 C 0.041 3.959 20 H 0.108 0.892 21 C -0.102 4.102 22 N -0.320 5.320 23 C -0.112 4.112 24 C -0.018 4.018 25 O -0.312 6.312 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.227 0.773 30 H 0.143 0.857 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.104 0.896 35 H 0.044 0.956 36 H 0.172 0.828 37 H 0.047 0.953 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.798 -6.644 15.487 16.948 hybrid contribution 0.752 0.713 -1.488 1.814 sum -1.045 -5.931 13.999 15.240 Atomic orbital electron populations 1.22141 0.95135 1.02301 1.01938 1.20911 0.94499 0.95812 0.82563 0.89679 1.43718 1.75079 1.11697 1.05469 1.18097 1.00291 0.88961 0.87012 1.21033 1.08949 0.93919 0.99002 1.21334 0.99208 0.99939 0.92876 1.18637 0.93873 0.93191 0.94989 1.19574 1.46360 0.93023 0.93426 0.90686 1.26648 0.91357 0.98462 1.01355 1.69868 1.34259 1.10677 1.31538 0.85173 0.78799 0.78037 0.77755 1.18377 1.18994 1.19318 1.22317 1.06647 0.93443 0.93687 1.66605 1.19135 1.40292 0.99679 1.22343 0.92299 0.83820 0.97444 0.89243 1.22502 0.96183 0.99662 0.91809 1.60616 1.16262 1.13402 1.41672 1.22690 0.96886 0.89654 1.01963 1.22843 0.92788 0.96915 0.89276 1.88000 1.72863 1.22936 1.47403 0.92471 0.89948 0.93919 0.77330 0.85741 0.86563 0.90325 0.85142 0.89563 0.95599 0.82795 0.95325 0.87457 0.86972 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 9.24 71.98 0.66 -3.53 16 2 C 0.17 4.80 2.09 44.99 0.09 4.90 16 3 H 0.09 2.46 6.42 -2.39 -0.02 2.45 16 4 N -0.72 -26.14 4.45 -324.33 -1.44 -27.58 16 5 C 0.29 13.25 7.62 133.31 1.02 14.27 16 6 C -0.21 -9.48 8.72 22.23 0.19 -9.29 16 7 C -0.11 -5.61 8.75 22.64 0.20 -5.42 16 8 C 0.00 -0.09 5.59 -21.17 -0.12 -0.21 16 9 C -0.49 -26.88 9.07 23.40 0.21 -26.66 16 10 H 0.07 3.96 7.90 -2.91 -0.02 3.94 16 11 C 0.03 1.77 5.17 85.23 0.44 2.21 16 12 N -0.84 -43.63 10.92 21.82 0.24 -43.39 16 13 Si 0.98 38.55 29.59 68.60 2.03 40.58 16 14 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 15 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 16 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 17 C 0.00 -0.23 10.97 85.36 0.94 0.71 16 18 N -0.54 -27.18 10.37 -191.21 -1.98 -29.17 16 19 C 0.10 2.36 2.55 30.63 0.08 2.44 16 20 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 21 C 0.03 0.68 5.93 86.31 0.51 1.19 16 22 N -0.69 -13.22 6.92 -512.99 -3.55 -16.77 16 23 C 0.02 0.30 6.76 86.31 0.58 0.88 16 24 C 0.06 1.03 7.01 72.01 0.50 1.54 16 25 O -0.39 -9.60 9.31 -148.98 -1.39 -10.99 16 26 H 0.06 1.60 7.69 -2.39 -0.02 1.58 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.31 7.59 -2.39 -0.02 1.29 16 29 H 0.39 14.39 8.11 -92.71 -0.75 13.64 16 30 H 0.12 4.96 5.98 -2.91 -0.02 4.94 16 31 H 0.12 6.29 6.19 -2.91 -0.02 6.27 16 32 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 33 H 0.13 6.49 8.06 -2.91 -0.02 6.47 16 34 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.03 0.75 7.36 -2.39 -0.02 0.73 16 36 H 0.35 5.83 8.90 -89.69 -0.80 5.03 16 37 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -62.08 321.87 -1.27 -63.35 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -0.49 Total: 40.94 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 5.32 Total: -16.97 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -6.74 Total: -116.91 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.39 Total: -10.99 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -62.08 -1.27 -63.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170559737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.950 kcal (2) G-P(sol) polarization free energy of solvation -62.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds