Wall clock time and date at job start Mon Mar 30 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47027 * 2 1 4 4 N 1.46495 * 109.47208 * 120.00041 * 2 1 3 5 5 C 1.38373 * 120.00336 * 275.00637 * 4 2 1 6 6 C 1.39705 * 119.42653 * 359.72193 * 5 4 2 7 7 C 1.36563 * 119.49170 * 179.76991 * 6 5 4 8 8 C 1.41329 * 118.40701 * 0.50061 * 7 6 5 9 9 C 1.41202 * 120.56893 * 179.77066 * 8 7 6 10 10 H 1.08000 * 119.99793 * 203.60855 * 9 8 7 11 11 C 1.39870 * 120.00052 * 23.61104 * 9 8 7 12 12 N 1.30894 * 120.00368 * 17.65200 * 11 9 8 13 13 Si 1.86799 * 119.99634 * 197.65529 * 11 9 8 14 14 H 1.48494 * 109.47263 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47453 * 120.00087 * 13 11 9 16 16 H 1.48512 * 109.46763 * 239.99795 * 13 11 9 17 17 C 1.40751 * 118.85691 * 359.74293 * 8 7 6 18 18 N 1.31486 * 120.37092 * 0.02562 * 17 8 7 19 19 C 1.52995 * 109.47099 * 240.00470 * 2 1 3 20 20 H 1.09000 * 109.50458 * 184.91551 * 19 2 1 21 21 C 1.53093 * 109.51237 * 64.78256 * 19 2 1 22 22 N 1.47013 * 109.26471 * 183.21537 * 21 19 2 23 23 C 1.47018 * 110.74943 * 58.61304 * 22 21 19 24 24 C 1.53093 * 109.25971 * 301.38878 * 23 22 21 25 25 O 1.43013 * 109.50612 * 304.99850 * 19 2 1 26 26 H 1.08998 * 109.46905 * 299.99925 * 1 2 3 27 27 H 1.09003 * 109.47082 * 59.99872 * 1 2 3 28 28 H 1.09000 * 109.47093 * 179.97438 * 1 2 3 29 29 H 0.97004 * 119.99956 * 94.99747 * 4 2 1 30 30 H 1.08003 * 120.25502 * 0.02562 * 6 5 4 31 31 H 1.07999 * 120.80000 * 180.22005 * 7 6 5 32 32 H 0.96992 * 120.00298 * 180.02562 * 12 11 9 33 33 H 1.08001 * 119.81536 * 180.02562 * 17 8 7 34 34 H 1.09005 * 109.50389 * 303.15470 * 21 19 2 35 35 H 1.09005 * 109.50789 * 63.27698 * 21 19 2 36 36 H 1.00894 * 111.00576 * 182.39084 * 22 21 19 37 37 H 1.09002 * 109.50538 * 181.45267 * 23 22 21 38 38 H 1.09005 * 109.50737 * 61.32000 * 23 22 21 39 39 H 1.09005 * 109.50690 * 296.90876 * 24 23 22 40 40 H 1.09003 * 109.51042 * 176.78651 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1504 -0.0004 2.3881 6 6 1.8202 1.3562 2.4360 7 6 1.9455 2.0375 3.6129 8 6 2.4196 1.3395 4.7467 9 6 2.5713 2.0004 5.9852 10 1 3.2606 1.6151 6.7220 11 6 1.8289 3.1540 6.2580 12 7 0.7654 3.4313 5.5470 13 14 2.3551 4.2989 7.6370 14 1 3.5799 3.7641 8.2842 15 1 2.6366 5.6468 7.0810 16 1 1.2664 4.3957 8.6425 17 6 2.7373 -0.0258 4.6200 18 7 2.5944 -0.6372 3.4648 19 6 2.0400 -0.7211 -1.2493 20 1 3.1264 -0.7983 -1.2069 21 6 1.6308 0.0660 -2.4969 22 7 2.0560 -0.6704 -3.6962 23 6 1.4528 -2.0108 -3.7255 24 6 1.8638 -2.7772 -2.4655 25 8 1.4702 -2.0314 -1.3103 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.2490 -1.6318 1.1525 30 1 1.4645 1.8613 1.5501 31 1 1.6928 3.0857 3.6747 32 1 0.2508 4.2314 5.7359 33 1 3.1004 -0.5743 5.4766 34 1 0.5479 0.1895 -2.5105 35 1 2.1092 1.0454 -2.4826 36 1 1.8335 -0.1553 -4.5347 37 1 1.8012 -2.5475 -4.6079 38 1 0.3670 -1.9206 -3.7586 39 1 2.9452 -2.9142 -2.4593 40 1 1.3730 -3.7504 -2.4551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170559739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:28 Heat of formation + Delta-G solvation = -7.862968 kcal Electronic energy + Delta-G solvation = -21418.034577 eV Core-core repulsion = 18232.368023 eV Total energy + Delta-G solvation = -3185.666554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.82452 -38.44411 -35.87754 -34.69267 -33.81380 -31.73153 -30.55299 -29.36604 -28.40762 -26.46308 -25.06613 -24.01706 -22.25175 -21.60574 -20.51845 -19.79546 -17.22850 -17.18466 -16.48686 -16.14135 -15.68386 -15.07538 -14.97707 -14.66794 -14.43453 -14.04634 -13.77248 -13.52511 -13.13107 -12.92227 -12.34377 -12.27600 -12.01558 -11.78742 -11.55413 -11.46068 -11.32297 -11.15001 -11.04020 -10.75974 -10.52239 -10.49269 -9.79791 -9.72075 -9.38684 -8.76164 -8.69196 -8.19130 -7.94731 -6.79564 -6.55679 -4.13858 2.78855 3.02220 3.11619 3.17202 3.32689 3.63228 3.78450 3.99095 4.17461 4.72938 4.73727 4.85543 4.88040 4.97348 5.09336 5.20905 5.39199 5.45688 5.53537 5.60687 5.72032 5.80572 5.94353 5.97835 6.12906 6.28796 6.53109 6.54653 6.65778 6.69104 6.91794 6.95047 7.11265 7.22038 7.37582 7.49294 7.81709 7.96429 8.33772 8.50051 8.73485 8.89189 8.98566 9.78674 10.27231 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043187 B = 0.003454 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.192187 B = 8105.515326 C = 8447.970499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.085 0.915 4 N -0.735 5.735 5 C 0.283 3.717 6 C -0.206 4.206 7 C -0.093 4.093 8 C 0.028 3.972 9 C -0.457 4.457 10 H 0.078 0.922 11 C 0.073 3.927 12 N -0.806 5.806 13 Si 0.906 3.094 14 H -0.261 1.261 15 H -0.274 1.274 16 H -0.276 1.276 17 C 0.012 3.988 18 N -0.523 5.523 19 C 0.089 3.911 20 H 0.071 0.929 21 C 0.025 3.975 22 N -0.689 5.689 23 C 0.019 3.981 24 C 0.062 3.938 25 O -0.372 6.372 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.393 0.607 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.278 0.722 33 H 0.126 0.874 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.345 0.655 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 -4.315 -16.203 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.102 0.898 4 N -0.373 5.373 5 C 0.050 3.950 6 C -0.230 4.230 7 C -0.120 4.120 8 C 0.023 3.977 9 C -0.488 4.488 10 H 0.096 0.904 11 C -0.142 4.142 12 N -0.433 5.433 13 Si 0.731 3.269 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.202 1.202 17 C -0.146 4.146 18 N -0.238 5.238 19 C 0.030 3.970 20 H 0.089 0.911 21 C -0.105 4.105 22 N -0.320 5.320 23 C -0.110 4.110 24 C -0.016 4.016 25 O -0.290 6.290 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.227 0.773 30 H 0.115 0.885 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.163 0.837 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.064 -5.153 -15.903 16.717 hybrid contribution -0.878 1.492 0.149 1.737 sum -0.941 -3.660 -15.754 16.201 Atomic orbital electron populations 1.22283 0.96294 1.02539 1.01334 1.20564 0.93881 0.95663 0.82990 0.89755 1.43574 1.76057 1.11840 1.05829 1.17762 1.01887 0.88899 0.86430 1.20824 1.09536 0.93932 0.98732 1.21303 0.99939 1.00048 0.90695 1.18357 0.93546 0.91908 0.93911 1.19347 1.21117 1.07778 1.00596 0.90436 1.25840 0.93309 0.97855 0.97223 1.69827 1.11809 1.24192 1.37497 0.86294 0.79730 0.80033 0.80819 1.18484 1.19910 1.20181 1.22190 1.07526 0.91923 0.92939 1.66532 1.17895 1.40035 0.99359 1.22464 0.97836 0.83000 0.93716 0.91122 1.22654 0.99425 0.97852 0.90527 1.60507 1.62471 1.03919 1.05144 1.22623 0.97485 0.91162 0.99765 1.22623 1.00071 0.94543 0.84321 1.88053 1.71369 1.26727 1.42897 0.91924 0.93042 0.91899 0.77320 0.88482 0.85533 0.91165 0.85640 0.93419 0.89410 0.83685 0.89877 0.94259 0.92459 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 8.95 37.16 0.33 -2.12 16 2 C 0.18 2.70 2.13 -67.93 -0.14 2.55 16 3 H 0.08 1.29 6.40 -51.93 -0.33 0.96 16 4 N -0.73 -13.93 5.20 -53.87 -0.28 -14.21 16 5 C 0.28 6.55 7.62 -155.13 -1.18 5.37 16 6 C -0.21 -4.82 8.74 -39.64 -0.35 -5.17 16 7 C -0.09 -2.41 8.74 -39.01 -0.34 -2.76 16 8 C 0.03 0.75 5.59 -106.65 -0.60 0.15 16 9 C -0.46 -12.16 9.07 -37.85 -0.34 -12.50 16 10 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 11 C 0.07 1.85 5.17 -17.34 -0.09 1.76 16 12 N -0.81 -20.91 10.92 55.54 0.61 -20.30 16 13 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 14 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 16 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 17 C 0.01 0.31 10.97 -16.75 -0.18 0.13 16 18 N -0.52 -13.13 10.37 -11.79 -0.12 -13.25 16 19 C 0.09 1.15 2.63 -26.69 -0.07 1.08 16 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 21 C 0.03 0.26 5.87 -3.71 -0.02 0.24 16 22 N -0.69 -6.39 6.92 -113.49 -0.79 -7.18 16 23 C 0.02 0.17 6.76 -3.71 -0.03 0.14 16 24 C 0.06 0.62 7.01 37.21 0.26 0.88 16 25 O -0.37 -4.95 9.32 -35.23 -0.33 -5.28 16 26 H 0.06 1.06 7.64 -51.93 -0.40 0.67 16 27 H 0.05 0.63 6.50 -51.93 -0.34 0.30 16 28 H 0.06 0.98 7.56 -51.93 -0.39 0.59 16 29 H 0.39 7.41 8.50 -40.82 -0.35 7.06 16 30 H 0.10 2.00 6.01 -52.48 -0.32 1.68 16 31 H 0.13 3.35 6.19 -52.49 -0.32 3.02 16 32 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 33 H 0.13 3.02 8.06 -52.49 -0.42 2.59 16 34 H 0.05 0.50 6.42 -51.93 -0.33 0.16 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.35 2.49 8.90 -39.29 -0.35 2.14 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 320.15 15.07 4.82 4.82 Total: -1.00 -29.23 320.15 -9.51 -38.74 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.64 Total: 13.11 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.75 Total: -10.23 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.58 Total: -54.94 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.33 Total: -5.28 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.23 -9.51 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170559739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.875 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds