Wall clock time and date at job start Mon Mar 30 2020 02:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47027 * 2 1 4 4 N 1.46495 * 109.47208 * 120.00041 * 2 1 3 5 5 C 1.38373 * 120.00336 * 275.00637 * 4 2 1 6 6 C 1.39705 * 119.42653 * 359.72193 * 5 4 2 7 7 C 1.36563 * 119.49170 * 179.76991 * 6 5 4 8 8 C 1.41329 * 118.40701 * 0.50061 * 7 6 5 9 9 C 1.41202 * 120.56893 * 179.77066 * 8 7 6 10 10 H 1.08000 * 119.99793 * 203.60855 * 9 8 7 11 11 C 1.39870 * 120.00052 * 23.61104 * 9 8 7 12 12 N 1.30894 * 120.00368 * 17.65200 * 11 9 8 13 13 Si 1.86799 * 119.99634 * 197.65529 * 11 9 8 14 14 H 1.48494 * 109.47263 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47453 * 120.00087 * 13 11 9 16 16 H 1.48512 * 109.46763 * 239.99795 * 13 11 9 17 17 C 1.40751 * 118.85691 * 359.74293 * 8 7 6 18 18 N 1.31486 * 120.37092 * 0.02562 * 17 8 7 19 19 C 1.52995 * 109.47099 * 240.00470 * 2 1 3 20 20 H 1.09000 * 109.50458 * 184.91551 * 19 2 1 21 21 C 1.53093 * 109.51237 * 64.78256 * 19 2 1 22 22 N 1.47013 * 109.26471 * 183.21537 * 21 19 2 23 23 C 1.47018 * 110.74943 * 58.61304 * 22 21 19 24 24 C 1.53093 * 109.25971 * 301.38878 * 23 22 21 25 25 O 1.43013 * 109.50612 * 304.99850 * 19 2 1 26 26 H 1.08998 * 109.46905 * 299.99925 * 1 2 3 27 27 H 1.09003 * 109.47082 * 59.99872 * 1 2 3 28 28 H 1.09000 * 109.47093 * 179.97438 * 1 2 3 29 29 H 0.97004 * 119.99956 * 94.99747 * 4 2 1 30 30 H 1.08003 * 120.25502 * 0.02562 * 6 5 4 31 31 H 1.07999 * 120.80000 * 180.22005 * 7 6 5 32 32 H 0.96992 * 120.00298 * 180.02562 * 12 11 9 33 33 H 1.08001 * 119.81536 * 180.02562 * 17 8 7 34 34 H 1.09005 * 109.50389 * 303.15470 * 21 19 2 35 35 H 1.09005 * 109.50789 * 63.27698 * 21 19 2 36 36 H 1.00894 * 111.00576 * 182.39084 * 22 21 19 37 37 H 1.09002 * 109.50538 * 181.45267 * 23 22 21 38 38 H 1.09005 * 109.50737 * 61.32000 * 23 22 21 39 39 H 1.09005 * 109.50690 * 296.90876 * 24 23 22 40 40 H 1.09003 * 109.51042 * 176.78651 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1504 -0.0004 2.3881 6 6 1.8202 1.3562 2.4360 7 6 1.9455 2.0375 3.6129 8 6 2.4196 1.3395 4.7467 9 6 2.5713 2.0004 5.9852 10 1 3.2606 1.6151 6.7220 11 6 1.8289 3.1540 6.2580 12 7 0.7654 3.4313 5.5470 13 14 2.3551 4.2989 7.6370 14 1 3.5799 3.7641 8.2842 15 1 2.6366 5.6468 7.0810 16 1 1.2664 4.3957 8.6425 17 6 2.7373 -0.0258 4.6200 18 7 2.5944 -0.6372 3.4648 19 6 2.0400 -0.7211 -1.2493 20 1 3.1264 -0.7983 -1.2069 21 6 1.6308 0.0660 -2.4969 22 7 2.0560 -0.6704 -3.6962 23 6 1.4528 -2.0108 -3.7255 24 6 1.8638 -2.7772 -2.4655 25 8 1.4702 -2.0314 -1.3103 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.2490 -1.6318 1.1525 30 1 1.4645 1.8613 1.5501 31 1 1.6928 3.0857 3.6747 32 1 0.2508 4.2314 5.7359 33 1 3.1004 -0.5743 5.4766 34 1 0.5479 0.1895 -2.5105 35 1 2.1092 1.0454 -2.4826 36 1 1.8335 -0.1553 -4.5347 37 1 1.8012 -2.5475 -4.6079 38 1 0.3670 -1.9206 -3.7586 39 1 2.9452 -2.9142 -2.4593 40 1 1.3730 -3.7504 -2.4551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170559739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:27 Heat of formation + Delta-G solvation = -28.361649 kcal Electronic energy + Delta-G solvation = -21418.923467 eV Core-core repulsion = 18232.368023 eV Total energy + Delta-G solvation = -3186.555444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.90763 -40.15449 -37.31312 -35.67563 -35.49260 -33.12947 -32.44572 -30.79928 -29.88824 -27.41729 -26.74823 -25.12585 -23.96121 -23.13217 -21.98639 -20.89782 -19.18016 -18.41355 -17.74981 -17.37434 -16.96345 -16.74770 -16.06445 -15.81238 -15.49843 -15.35492 -15.05180 -15.02942 -14.61418 -14.37344 -13.85660 -13.63274 -13.54270 -13.42745 -13.09115 -12.85553 -12.76794 -12.50372 -12.29083 -12.18604 -11.88433 -11.59597 -11.54076 -11.19724 -10.68649 -10.46280 -10.14983 -9.89898 -9.48535 -8.66842 -8.39552 -6.11262 0.90306 1.13589 1.42519 1.55791 1.58248 2.25931 2.52151 2.76700 2.83979 3.17940 3.79745 3.81272 3.91838 4.04302 4.08347 4.17885 4.27429 4.34801 4.46231 4.47295 4.62878 4.67433 4.77587 4.79726 4.86212 4.93719 4.95563 4.98161 5.07704 5.29855 5.40188 5.43160 5.61536 5.82019 5.89709 5.99614 6.20732 6.36403 6.51248 6.65232 6.84880 6.94025 7.15733 7.87082 8.40744 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043187 B = 0.003454 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.192187 B = 8105.515326 C = 8447.970499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.172 3.828 3 H 0.088 0.912 4 N -0.727 5.727 5 C 0.288 3.712 6 C -0.206 4.206 7 C -0.107 4.107 8 C -0.001 4.001 9 C -0.491 4.491 10 H 0.076 0.924 11 C 0.034 3.966 12 N -0.836 5.836 13 Si 0.982 3.018 14 H -0.259 1.259 15 H -0.265 1.265 16 H -0.269 1.269 17 C -0.004 4.004 18 N -0.540 5.540 19 C 0.096 3.904 20 H 0.059 0.941 21 C 0.031 3.969 22 N -0.694 5.694 23 C 0.022 3.978 24 C 0.054 3.946 25 O -0.393 6.393 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.394 0.606 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.286 0.714 33 H 0.133 0.867 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.360 0.640 37 H 0.105 0.895 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 -3.867 -17.861 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.065 3.935 3 H 0.105 0.895 4 N -0.365 5.365 5 C 0.054 3.946 6 C -0.229 4.229 7 C -0.134 4.134 8 C -0.007 4.007 9 C -0.522 4.522 10 H 0.094 0.906 11 C -0.179 4.179 12 N -0.463 5.463 13 Si 0.803 3.197 14 H -0.183 1.183 15 H -0.189 1.189 16 H -0.194 1.194 17 C -0.161 4.161 18 N -0.256 5.256 19 C 0.038 3.962 20 H 0.077 0.923 21 C -0.099 4.099 22 N -0.328 5.328 23 C -0.107 4.107 24 C -0.023 4.023 25 O -0.312 6.312 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.228 0.772 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.179 0.821 37 H 0.123 0.877 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.282 -4.724 -17.614 18.238 hybrid contribution -0.843 1.230 0.501 1.573 sum -1.125 -3.494 -17.112 17.502 Atomic orbital electron populations 1.22173 0.95631 1.02070 1.01586 1.20812 0.94241 0.95888 0.82539 0.89470 1.43742 1.75264 1.11895 1.05560 1.18098 1.00127 0.89215 0.87175 1.21032 1.08855 0.94099 0.98949 1.21337 1.00674 0.99857 0.91528 1.18646 0.94704 0.92593 0.94707 1.19576 1.22278 1.09475 1.00911 0.90576 1.26674 0.92766 0.98709 0.99795 1.69869 1.12507 1.24936 1.39031 0.85155 0.79279 0.77716 0.77503 1.18311 1.18949 1.19393 1.22342 1.08131 0.91905 0.93674 1.66599 1.18957 1.40310 0.99758 1.22264 0.96935 0.83421 0.93614 0.92287 1.22556 0.99673 0.97881 0.89836 1.60475 1.62679 1.04303 1.05297 1.22629 0.97542 0.90831 0.99692 1.22855 1.00128 0.95201 0.84080 1.88016 1.71598 1.26959 1.44670 0.94346 0.90034 0.92697 0.77215 0.85729 0.86472 0.90320 0.84986 0.93037 0.88410 0.82071 0.87699 0.94140 0.92850 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 8.95 71.98 0.64 -3.74 16 2 C 0.17 5.00 2.13 44.99 0.10 5.09 16 3 H 0.09 2.51 6.40 -2.39 -0.02 2.50 16 4 N -0.73 -27.17 5.20 -324.35 -1.69 -28.86 16 5 C 0.29 13.38 7.62 133.32 1.02 14.40 16 6 C -0.21 -9.61 8.74 22.23 0.19 -9.42 16 7 C -0.11 -5.67 8.74 22.64 0.20 -5.47 16 8 C 0.00 -0.07 5.59 -21.18 -0.12 -0.19 16 9 C -0.49 -26.83 9.07 23.39 0.21 -26.61 16 10 H 0.08 4.01 7.90 -2.91 -0.02 3.99 16 11 C 0.03 1.71 5.17 85.23 0.44 2.15 16 12 N -0.84 -43.82 10.92 21.82 0.24 -43.58 16 13 Si 0.98 38.58 29.59 68.60 2.03 40.61 16 14 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 15 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 16 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 17 C 0.00 -0.20 10.97 85.36 0.94 0.74 16 18 N -0.54 -27.50 10.37 -191.21 -1.98 -29.49 16 19 C 0.10 2.34 2.63 30.62 0.08 2.42 16 20 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 21 C 0.03 0.56 5.87 86.31 0.51 1.06 16 22 N -0.69 -10.89 6.92 -512.98 -3.55 -14.44 16 23 C 0.02 0.32 6.76 86.31 0.58 0.91 16 24 C 0.05 0.98 7.01 72.01 0.50 1.49 16 25 O -0.39 -9.84 9.32 -148.98 -1.39 -11.23 16 26 H 0.04 1.26 7.64 -2.39 -0.02 1.24 16 27 H 0.08 1.79 6.50 -2.39 -0.02 1.78 16 28 H 0.05 1.63 7.56 -2.39 -0.02 1.61 16 29 H 0.39 14.68 8.50 -92.71 -0.79 13.89 16 30 H 0.12 5.01 6.01 -2.91 -0.02 4.99 16 31 H 0.12 6.35 6.19 -2.91 -0.02 6.33 16 32 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 33 H 0.13 6.59 8.06 -2.91 -0.02 6.56 16 34 H 0.05 0.91 6.42 -2.38 -0.02 0.89 16 35 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.36 4.04 8.90 -89.70 -0.80 3.24 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.05 1.00 8.14 -2.38 -0.02 0.99 16 40 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -63.50 320.15 -1.56 -65.06 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.52 Total: 39.11 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 5.29 Total: -17.18 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -6.98 Total: -116.37 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.39 Total: -11.23 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -63.50 -1.56 -65.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170559739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.701 kcal (2) G-P(sol) polarization free energy of solvation -63.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds