Wall clock time and date at job start Mon Mar 30 2020 02:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.38820 * 120.00168 * 84.72200 * 4 2 1 6 6 C 1.39803 * 119.58330 * 0.02562 * 5 4 2 7 7 C 1.38594 * 119.48825 * 179.97438 * 6 5 4 8 8 C 1.38390 * 118.68496 * 0.02562 * 7 6 5 9 9 C 1.40556 * 119.14300 * 359.97438 * 8 7 6 10 10 C 1.41317 * 119.77869 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00239 * 0.02562 * 10 9 8 12 12 C 1.40029 * 119.99843 * 179.97438 * 10 9 8 13 13 N 1.30743 * 120.00141 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99924 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47168 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47022 * 120.00455 * 14 12 10 17 17 H 1.48500 * 109.47417 * 240.00228 * 14 12 10 18 18 N 1.31949 * 119.58464 * 179.73288 * 5 4 2 19 19 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 20 20 H 1.09001 * 109.50340 * 299.91093 * 19 2 1 21 21 C 1.53095 * 109.50626 * 179.78351 * 19 2 1 22 22 N 1.47020 * 109.25888 * 183.21697 * 21 19 2 23 23 C 1.47011 * 110.75092 * 58.61382 * 22 21 19 24 24 C 1.53106 * 109.25851 * 301.38429 * 23 22 21 25 25 O 1.43011 * 109.25372 * 56.85381 * 24 23 22 26 26 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 27 27 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 28 28 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 29 29 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 30 30 H 1.07996 * 120.25413 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.65855 * 179.97438 * 7 6 5 32 32 H 1.07997 * 120.42877 * 179.97438 * 8 7 6 33 33 H 0.96994 * 119.99729 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.50579 * 303.14869 * 21 19 2 35 35 H 1.09005 * 109.50986 * 63.28022 * 21 19 2 36 36 H 1.00897 * 111.00112 * 182.38819 * 22 21 19 37 37 H 1.09000 * 109.50878 * 181.45231 * 23 22 21 38 38 H 1.08994 * 109.51068 * 61.32212 * 23 22 21 39 39 H 1.08993 * 109.50628 * 296.91528 * 24 23 22 40 40 H 1.09003 * 109.50304 * 176.78574 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1454 0.0006 -2.3934 6 6 1.8055 1.3556 -2.4476 7 6 1.9336 2.0438 -3.6437 8 6 2.3973 1.3627 -4.7556 9 6 2.7227 0.0005 -4.6374 10 6 3.1978 -0.7080 -5.7641 11 1 3.3102 -0.2025 -6.7119 12 6 3.5238 -2.0651 -5.6514 13 7 3.3882 -2.6769 -4.5039 14 14 4.1512 -3.0017 -7.1409 15 1 4.2131 -2.0882 -8.3101 16 1 5.5084 -3.5330 -6.8559 17 1 3.2315 -4.1285 -7.4406 18 7 2.5911 -0.6281 -3.4645 19 6 2.0400 -0.7213 1.2492 20 1 1.6782 -0.2070 2.1396 21 6 3.5709 -0.7265 1.2472 22 7 4.0547 -1.4871 2.4087 23 6 3.5459 -2.8660 2.3770 24 6 2.0151 -2.8393 2.3676 25 8 1.5637 -2.0699 1.2499 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 2.2490 -1.6318 -1.1527 30 1 1.4457 1.8621 -1.5642 31 1 1.6760 3.0908 -3.7070 32 1 2.5076 1.8713 -5.7019 33 1 3.6138 -3.6170 -4.4260 34 1 3.9321 -1.1929 0.3307 35 1 3.9385 0.2981 1.3044 36 1 5.0626 -1.4745 2.4548 37 1 3.8951 -3.4032 3.2588 38 1 3.9067 -3.3666 1.4786 39 1 1.6534 -2.3869 3.2909 40 1 1.6339 -3.8572 2.2866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170565300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:37 Heat of formation + Delta-G solvation = -1.531561 kcal Electronic energy + Delta-G solvation = -21953.660135 eV Core-core repulsion = 18768.268131 eV Total energy + Delta-G solvation = -3185.392004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.67976 -38.14743 -35.73380 -34.54145 -33.39324 -31.56875 -30.32895 -29.51236 -27.93306 -26.50772 -25.32203 -23.89163 -21.83821 -21.31832 -20.67933 -19.63757 -17.38636 -17.03775 -16.35627 -16.03370 -14.96044 -14.78673 -14.72879 -14.51919 -14.31396 -14.13730 -13.77162 -13.46145 -13.01758 -12.77897 -12.54950 -11.90114 -11.84098 -11.75369 -11.45759 -11.34230 -11.18675 -10.94075 -10.78407 -10.59088 -10.38825 -10.34051 -9.84756 -9.65841 -9.47392 -8.85812 -8.56971 -7.86912 -7.45412 -6.43607 -6.28531 -4.43433 2.89413 3.13140 3.17602 3.28485 3.32913 3.74955 4.00900 4.02957 4.26401 4.83778 4.88029 4.91129 5.02835 5.14635 5.30538 5.34237 5.58206 5.59175 5.74374 5.77134 5.85247 6.03982 6.06449 6.12841 6.20162 6.29228 6.58110 6.72687 6.75434 6.90953 6.94290 6.99372 7.13861 7.22135 7.30022 7.65291 7.86511 7.97658 8.22543 8.43093 8.77344 8.85207 9.18337 10.29526 10.45131 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.005324 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.699169 B = 5258.179395 C = 6292.264309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.172 3.828 3 H 0.087 0.913 4 N -0.726 5.726 5 C 0.414 3.586 6 C -0.369 4.369 7 C -0.032 4.032 8 C -0.319 4.319 9 C 0.293 3.707 10 C -0.435 4.435 11 H 0.082 0.918 12 C 0.071 3.929 13 N -0.715 5.715 14 Si 0.903 3.097 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.274 1.274 18 N -0.532 5.532 19 C 0.091 3.909 20 H 0.071 0.929 21 C 0.024 3.976 22 N -0.690 5.690 23 C 0.017 3.983 24 C 0.064 3.936 25 O -0.372 6.372 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.399 0.601 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.268 0.732 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.344 0.656 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 -0.399 12.739 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.064 3.936 3 H 0.104 0.896 4 N -0.363 5.363 5 C 0.174 3.826 6 C -0.395 4.395 7 C -0.056 4.056 8 C -0.342 4.342 9 C 0.166 3.834 10 C -0.467 4.467 11 H 0.101 0.899 12 C -0.154 4.154 13 N -0.336 5.336 14 Si 0.728 3.272 15 H -0.185 1.185 16 H -0.200 1.200 17 H -0.200 1.200 18 N -0.253 5.253 19 C 0.032 3.968 20 H 0.089 0.911 21 C -0.106 4.106 22 N -0.322 5.322 23 C -0.113 4.113 24 C -0.013 4.013 25 O -0.290 6.290 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.234 0.766 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.162 0.838 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.892 -1.167 13.255 13.336 hybrid contribution 0.896 -0.178 -1.118 1.444 sum 0.004 -1.344 12.137 12.211 Atomic orbital electron populations 1.22209 0.95952 1.02606 1.01388 1.20707 0.93965 0.95774 0.83145 0.89563 1.44148 1.73812 1.12454 1.05875 1.18544 0.89640 0.87557 0.86886 1.20627 1.25111 0.95255 0.98531 1.20588 0.95210 0.96888 0.92932 1.21519 1.17545 0.97094 0.98015 1.18203 0.87232 0.88080 0.89892 1.19609 1.37174 0.94086 0.95877 0.89937 1.26046 0.94487 0.98260 0.96564 1.70171 1.29909 1.09799 1.23770 0.86350 0.78850 0.79801 0.82231 1.18452 1.20034 1.19971 1.68223 1.23525 1.36023 0.97567 1.22476 0.92350 0.83720 0.98218 0.91115 1.22620 0.96210 0.99388 0.92359 1.60610 1.15337 1.13130 1.43094 1.22621 0.97051 0.90186 1.01427 1.22600 0.92561 0.96379 0.89742 1.88055 1.72295 1.22879 1.45792 0.92986 0.91873 0.91886 0.76572 0.89109 0.89064 0.88846 0.92101 0.92718 0.89794 0.83814 0.90042 0.93915 0.92725 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.24 37.16 0.34 -2.14 16 2 C 0.17 2.76 2.10 -67.93 -0.14 2.61 16 3 H 0.09 1.37 6.45 -51.93 -0.33 1.03 16 4 N -0.73 -14.79 4.47 -53.90 -0.24 -15.03 16 5 C 0.41 10.13 7.63 -155.33 -1.18 8.94 16 6 C -0.37 -8.49 8.82 -38.87 -0.34 -8.83 16 7 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 8 C -0.32 -8.17 9.83 -38.65 -0.38 -8.55 16 9 C 0.29 8.27 6.55 -85.00 -0.56 7.71 16 10 C -0.44 -11.98 9.14 -37.74 -0.34 -12.32 16 11 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 12 C 0.07 1.86 5.50 -17.34 -0.10 1.76 16 13 N -0.71 -19.32 11.46 55.55 0.64 -18.68 16 14 Si 0.90 19.03 29.56 -169.99 -5.02 14.00 16 15 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 N -0.53 -14.86 7.89 -10.33 -0.08 -14.94 16 19 C 0.09 1.27 2.56 -26.68 -0.07 1.20 16 20 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 21 C 0.02 0.32 5.93 -3.71 -0.02 0.30 16 22 N -0.69 -8.08 6.92 -113.49 -0.79 -8.87 16 23 C 0.02 0.19 6.76 -3.71 -0.03 0.16 16 24 C 0.06 0.74 7.01 37.21 0.26 1.00 16 25 O -0.37 -5.47 9.31 -35.23 -0.33 -5.80 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.07 7.61 -51.93 -0.39 0.67 16 28 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 29 H 0.40 8.60 8.10 -40.82 -0.33 8.27 16 30 H 0.09 1.84 6.02 -52.49 -0.32 1.53 16 31 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 32 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 33 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 34 H 0.05 0.90 7.35 -51.93 -0.38 0.52 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.34 3.52 8.90 -39.29 -0.35 3.17 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -30.10 323.49 -9.76 -39.87 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -5.86 Total: 13.86 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -2.96 Total: -9.29 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.47 Total: -57.52 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.33 Total: -5.80 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.10 -9.76 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170565300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.334 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds