Wall clock time and date at job start Mon Mar 30 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.38820 * 120.00168 * 84.72200 * 4 2 1 6 6 C 1.39803 * 119.58330 * 0.02562 * 5 4 2 7 7 C 1.38594 * 119.48825 * 179.97438 * 6 5 4 8 8 C 1.38390 * 118.68496 * 0.02562 * 7 6 5 9 9 C 1.40556 * 119.14300 * 359.97438 * 8 7 6 10 10 C 1.41317 * 119.77869 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00239 * 0.02562 * 10 9 8 12 12 C 1.40029 * 119.99843 * 179.97438 * 10 9 8 13 13 N 1.30743 * 120.00141 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99924 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47168 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47022 * 120.00455 * 14 12 10 17 17 H 1.48500 * 109.47417 * 240.00228 * 14 12 10 18 18 N 1.31949 * 119.58464 * 179.73288 * 5 4 2 19 19 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 20 20 H 1.09001 * 109.50340 * 299.91093 * 19 2 1 21 21 C 1.53095 * 109.50626 * 179.78351 * 19 2 1 22 22 N 1.47020 * 109.25888 * 183.21697 * 21 19 2 23 23 C 1.47011 * 110.75092 * 58.61382 * 22 21 19 24 24 C 1.53106 * 109.25851 * 301.38429 * 23 22 21 25 25 O 1.43011 * 109.25372 * 56.85381 * 24 23 22 26 26 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 27 27 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 28 28 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 29 29 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 30 30 H 1.07996 * 120.25413 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.65855 * 179.97438 * 7 6 5 32 32 H 1.07997 * 120.42877 * 179.97438 * 8 7 6 33 33 H 0.96994 * 119.99729 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.50579 * 303.14869 * 21 19 2 35 35 H 1.09005 * 109.50986 * 63.28022 * 21 19 2 36 36 H 1.00897 * 111.00112 * 182.38819 * 22 21 19 37 37 H 1.09000 * 109.50878 * 181.45231 * 23 22 21 38 38 H 1.08994 * 109.51068 * 61.32212 * 23 22 21 39 39 H 1.08993 * 109.50628 * 296.91528 * 24 23 22 40 40 H 1.09003 * 109.50304 * 176.78574 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1454 0.0006 -2.3934 6 6 1.8055 1.3556 -2.4476 7 6 1.9336 2.0438 -3.6437 8 6 2.3973 1.3627 -4.7556 9 6 2.7227 0.0005 -4.6374 10 6 3.1978 -0.7080 -5.7641 11 1 3.3102 -0.2025 -6.7119 12 6 3.5238 -2.0651 -5.6514 13 7 3.3882 -2.6769 -4.5039 14 14 4.1512 -3.0017 -7.1409 15 1 4.2131 -2.0882 -8.3101 16 1 5.5084 -3.5330 -6.8559 17 1 3.2315 -4.1285 -7.4406 18 7 2.5911 -0.6281 -3.4645 19 6 2.0400 -0.7213 1.2492 20 1 1.6782 -0.2070 2.1396 21 6 3.5709 -0.7265 1.2472 22 7 4.0547 -1.4871 2.4087 23 6 3.5459 -2.8660 2.3770 24 6 2.0151 -2.8393 2.3676 25 8 1.5637 -2.0699 1.2499 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 2.2490 -1.6318 -1.1527 30 1 1.4457 1.8621 -1.5642 31 1 1.6760 3.0908 -3.7070 32 1 2.5076 1.8713 -5.7019 33 1 3.6138 -3.6170 -4.4260 34 1 3.9321 -1.1929 0.3307 35 1 3.9385 0.2981 1.3044 36 1 5.0626 -1.4745 2.4548 37 1 3.8951 -3.4032 3.2588 38 1 3.9067 -3.3666 1.4786 39 1 1.6534 -2.3869 3.2909 40 1 1.6339 -3.8572 2.2866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170565300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:36 Heat of formation + Delta-G solvation = -22.463536 kcal Electronic energy + Delta-G solvation = -21954.567813 eV Core-core repulsion = 18768.268131 eV Total energy + Delta-G solvation = -3186.299683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85552 -39.90211 -37.21805 -35.59590 -35.25102 -33.11735 -32.11946 -30.84590 -29.64379 -27.60480 -27.20345 -24.95564 -23.50049 -23.04373 -21.99196 -21.00536 -19.23370 -18.38952 -17.73259 -17.30900 -16.58566 -16.42214 -15.91753 -15.73196 -15.62173 -15.35394 -15.19346 -15.04234 -14.52596 -14.45521 -13.97050 -13.59198 -13.39201 -12.89446 -12.83801 -12.70659 -12.66260 -12.55520 -12.37372 -12.13360 -11.86877 -11.70227 -11.51573 -11.28595 -10.69626 -10.62706 -9.82108 -9.58695 -9.41096 -8.23931 -8.21422 -6.46645 1.07200 1.38089 1.39853 1.55156 1.56839 2.24274 2.57720 2.83463 2.94024 3.06002 3.75202 3.87195 4.03751 4.08257 4.16791 4.27057 4.30094 4.40913 4.47268 4.56826 4.61298 4.72392 4.81048 4.85943 4.95497 4.96181 4.98403 5.03186 5.04697 5.18833 5.38201 5.43503 5.74656 5.75883 5.99420 6.09980 6.21812 6.24758 6.25119 6.60637 6.85918 6.97229 7.25749 8.37501 8.52902 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.005324 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.699169 B = 5258.179395 C = 6292.264309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.093 0.907 4 N -0.720 5.720 5 C 0.398 3.602 6 C -0.364 4.364 7 C -0.030 4.030 8 C -0.347 4.347 9 C 0.260 3.740 10 C -0.473 4.473 11 H 0.085 0.915 12 C 0.026 3.974 13 N -0.752 5.752 14 Si 0.985 3.015 15 H -0.255 1.255 16 H -0.267 1.267 17 H -0.268 1.268 18 N -0.568 5.568 19 C 0.099 3.901 20 H 0.094 0.906 21 C 0.028 3.972 22 N -0.683 5.683 23 C 0.017 3.983 24 C 0.059 3.941 25 O -0.396 6.396 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.390 0.610 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.100 0.900 33 H 0.274 0.726 34 H 0.019 0.981 35 H 0.091 0.909 36 H 0.353 0.647 37 H 0.109 0.891 38 H 0.022 0.978 39 H 0.070 0.930 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 -0.073 14.280 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.060 3.940 3 H 0.111 0.889 4 N -0.354 5.354 5 C 0.158 3.842 6 C -0.390 4.390 7 C -0.054 4.054 8 C -0.370 4.370 9 C 0.133 3.867 10 C -0.505 4.505 11 H 0.103 0.897 12 C -0.196 4.196 13 N -0.375 5.375 14 Si 0.805 3.195 15 H -0.178 1.178 16 H -0.192 1.192 17 H -0.193 1.193 18 N -0.291 5.291 19 C 0.041 3.959 20 H 0.112 0.888 21 C -0.102 4.102 22 N -0.315 5.315 23 C -0.113 4.113 24 C -0.017 4.017 25 O -0.316 6.316 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.223 0.777 30 H 0.140 0.860 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.109 0.891 36 H 0.171 0.829 37 H 0.128 0.872 38 H 0.041 0.959 39 H 0.088 0.912 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.104 -0.820 14.850 14.913 hybrid contribution 0.909 -0.233 -1.422 1.704 sum -0.195 -1.053 13.427 13.470 Atomic orbital electron populations 1.22115 0.95029 1.02002 1.02127 1.21003 0.94577 0.96036 0.82343 0.88880 1.44309 1.73118 1.11996 1.05966 1.18976 0.89247 0.88658 0.87362 1.20974 1.23710 0.94692 0.99613 1.21009 0.93641 0.98602 0.92123 1.21671 1.19210 0.96681 0.99398 1.18672 0.88039 0.89505 0.90528 1.19950 1.38952 0.95482 0.96149 0.89698 1.26954 0.94136 0.98640 0.99836 1.70278 1.30821 1.10340 1.26037 0.85133 0.78296 0.78081 0.77977 1.17797 1.19212 1.19255 1.68183 1.25035 1.37372 0.98473 1.22384 0.92184 0.83774 0.97608 0.88790 1.22510 0.96324 0.99737 0.91590 1.60648 1.16082 1.13352 1.41444 1.22689 0.96976 0.89824 1.01781 1.22830 0.92731 0.96873 0.89306 1.88025 1.72736 1.23324 1.47474 0.89533 0.93715 0.93165 0.77655 0.86013 0.85305 0.88191 0.91598 0.96301 0.89089 0.82855 0.87240 0.95922 0.91208 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 9.24 71.98 0.67 -3.76 16 2 C 0.17 5.12 2.10 44.99 0.09 5.21 16 3 H 0.09 2.74 6.45 -2.38 -0.02 2.73 16 4 N -0.72 -29.64 4.47 -324.45 -1.45 -31.09 16 5 C 0.40 19.79 7.63 133.42 1.02 20.80 16 6 C -0.36 -16.40 8.82 22.73 0.20 -16.20 16 7 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 8 C -0.35 -18.09 9.83 22.87 0.22 -17.86 16 9 C 0.26 15.20 6.55 40.18 0.26 15.46 16 10 C -0.47 -27.01 9.14 23.46 0.21 -26.80 16 11 H 0.08 4.57 7.85 -2.91 -0.02 4.55 16 12 C 0.03 1.37 5.50 85.29 0.47 1.84 16 13 N -0.75 -42.10 11.46 21.84 0.25 -41.85 16 14 Si 0.98 39.82 29.56 68.60 2.03 41.85 16 15 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 16 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 18 N -0.57 -32.87 7.89 -186.59 -1.47 -34.34 16 19 C 0.10 2.59 2.56 30.63 0.08 2.67 16 20 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 21 C 0.03 0.75 5.93 86.31 0.51 1.26 16 22 N -0.68 -14.81 6.92 -512.97 -3.55 -18.36 16 23 C 0.02 0.34 6.76 86.32 0.58 0.93 16 24 C 0.06 1.24 7.01 72.02 0.50 1.74 16 25 O -0.40 -11.19 9.31 -148.98 -1.39 -12.58 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.44 7.61 -2.38 -0.02 1.42 16 28 H 0.05 1.57 7.68 -2.39 -0.02 1.55 16 29 H 0.39 17.41 8.10 -92.70 -0.75 16.66 16 30 H 0.12 4.63 6.02 -2.91 -0.02 4.61 16 31 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 32 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 33 H 0.27 13.88 8.29 -92.71 -0.77 13.11 16 34 H 0.02 0.63 7.35 -2.39 -0.02 0.62 16 35 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.35 6.66 8.90 -89.70 -0.80 5.87 16 37 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -67.54 323.49 -1.02 -68.55 By element: Atomic # 1 Polarization: 44.13 SS G_CDS: -0.49 Total: 43.64 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 5.05 Total: -15.83 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.22 Total: -125.64 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -1.39 Total: -12.58 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -67.54 -1.02 -68.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170565300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.088 kcal (2) G-P(sol) polarization free energy of solvation -67.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds