Wall clock time and date at job start Mon Mar 30 2020 02:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47432 * 2 1 4 4 N 1.46504 * 109.46936 * 119.99348 * 2 1 3 5 5 C 1.38824 * 120.00180 * 275.00112 * 4 2 1 6 6 C 1.39794 * 119.58278 * 359.97438 * 5 4 2 7 7 C 1.38594 * 119.49223 * 180.02562 * 6 5 4 8 8 C 1.38386 * 118.67809 * 359.97438 * 7 6 5 9 9 C 1.40556 * 119.15147 * 0.02562 * 8 7 6 10 10 C 1.41314 * 119.78344 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00454 * 0.02562 * 10 9 8 12 12 C 1.40027 * 119.99967 * 180.02562 * 10 9 8 13 13 N 1.30744 * 119.99836 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00204 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47092 * 89.99805 * 14 12 10 16 16 H 1.48504 * 109.47151 * 209.99599 * 14 12 10 17 17 H 1.48499 * 109.47021 * 329.99549 * 14 12 10 18 18 N 1.31951 * 119.58500 * 179.72849 * 5 4 2 19 19 C 1.53003 * 109.47176 * 239.99029 * 2 1 3 20 20 H 1.08999 * 109.50692 * 185.08519 * 19 2 1 21 21 C 1.53097 * 109.50130 * 65.00324 * 19 2 1 22 22 N 1.47016 * 109.25580 * 183.16910 * 21 19 2 23 23 C 1.47015 * 110.75095 * 58.61926 * 22 21 19 24 24 C 1.53098 * 109.25723 * 301.38182 * 23 22 21 25 25 O 1.43014 * 109.54072 * 305.20006 * 19 2 1 26 26 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47192 * 300.00656 * 1 2 3 28 28 H 1.09005 * 109.46631 * 60.00662 * 1 2 3 29 29 H 0.97008 * 119.99846 * 94.99970 * 4 2 1 30 30 H 1.08002 * 120.25583 * 359.97438 * 6 5 4 31 31 H 1.08001 * 120.66266 * 179.97438 * 7 6 5 32 32 H 1.08007 * 120.42158 * 180.02562 * 8 7 6 33 33 H 0.96998 * 120.00053 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.50984 * 63.24033 * 21 19 2 35 35 H 1.08996 * 109.54131 * 303.12739 * 21 19 2 36 36 H 1.00899 * 110.99921 * 182.39231 * 22 21 19 37 37 H 1.08999 * 109.50673 * 61.31448 * 23 22 21 38 38 H 1.09004 * 109.50788 * 181.44864 * 23 22 21 39 39 H 1.08997 * 109.51060 * 296.91507 * 24 23 22 40 40 H 1.09000 * 109.51173 * 176.78603 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1509 0.0021 2.3921 6 6 1.8164 1.3585 2.4447 7 6 1.9500 2.0483 3.6394 8 6 2.4133 1.3671 4.7513 9 6 2.7331 0.0034 4.6348 10 6 3.2079 -0.7050 5.7616 11 1 3.3237 -0.1987 6.7085 12 6 3.5284 -2.0636 5.6504 13 7 3.3878 -2.6768 4.5043 14 14 4.1553 -3.0003 7.1400 15 1 3.0063 -3.5866 7.8758 16 1 5.0644 -4.0869 6.6949 17 1 4.8937 -2.0721 8.0336 18 7 2.5863 -0.6292 3.4658 19 6 2.0400 -0.7215 -1.2491 20 1 3.1262 -0.8013 -1.2053 21 6 1.6354 0.0685 -2.4966 22 7 2.0615 -0.6675 -3.6959 23 6 1.4549 -2.0063 -3.7283 24 6 1.8613 -2.7754 -2.4685 25 8 1.4670 -2.0302 -1.3131 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 2.2490 -1.6317 1.1528 30 1 1.4575 1.8651 1.5611 31 1 1.6974 3.0965 3.7013 32 1 2.5278 1.8769 5.6966 33 1 3.6094 -3.6180 4.4274 34 1 2.1163 1.0466 -2.4799 35 1 0.5530 0.1952 -2.5127 36 1 1.8421 -0.1507 -4.5342 37 1 0.3695 -1.9133 -3.7637 38 1 1.8040 -2.5427 -4.6107 39 1 2.9422 -2.9151 -2.4600 40 1 1.3681 -3.7474 -2.4604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170565302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:40 Heat of formation + Delta-G solvation = -0.379113 kcal Electronic energy + Delta-G solvation = -21697.708024 eV Core-core repulsion = 18512.365994 eV Total energy + Delta-G solvation = -3185.342030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.73920 -38.16251 -35.75808 -34.62056 -33.39794 -31.83014 -30.30203 -29.32502 -27.90055 -26.41367 -25.35223 -24.23882 -22.04710 -21.39823 -20.31484 -19.71682 -17.34641 -17.10181 -16.24444 -16.05044 -15.37384 -15.01034 -14.68942 -14.59724 -14.45108 -13.93764 -13.78998 -13.45442 -13.02343 -12.85794 -12.39032 -12.18136 -11.92688 -11.79919 -11.42223 -11.34531 -11.13514 -10.93488 -10.78183 -10.57467 -10.40284 -10.32692 -9.85551 -9.70951 -9.44256 -8.82988 -8.70702 -7.85321 -7.43323 -6.43017 -6.25954 -4.41433 2.92935 3.15027 3.18310 3.30122 3.35328 3.71567 3.84410 4.03284 4.24594 4.79448 4.88972 4.91763 4.95177 5.03780 5.15935 5.27651 5.45338 5.51852 5.59588 5.68621 5.78653 5.97593 6.02792 6.14680 6.21339 6.29676 6.58550 6.60622 6.73216 6.92481 6.95528 6.99116 7.02232 7.20457 7.32141 7.66698 7.87948 7.98892 8.24052 8.44561 8.78920 8.87180 9.19954 10.31906 10.47453 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022562 B = 0.004493 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.751355 B = 6229.876397 C = 7228.831305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.086 0.914 4 N -0.728 5.728 5 C 0.414 3.586 6 C -0.370 4.370 7 C -0.032 4.032 8 C -0.319 4.319 9 C 0.293 3.707 10 C -0.436 4.436 11 H 0.082 0.918 12 C 0.071 3.929 13 N -0.714 5.714 14 Si 0.904 3.096 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.262 1.262 18 N -0.531 5.531 19 C 0.088 3.912 20 H 0.071 0.929 21 C 0.026 3.974 22 N -0.689 5.689 23 C 0.020 3.980 24 C 0.062 3.938 25 O -0.371 6.371 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.399 0.601 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.269 0.731 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.345 0.655 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 0.756 -14.661 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.066 3.934 3 H 0.104 0.896 4 N -0.364 5.364 5 C 0.174 3.826 6 C -0.396 4.396 7 C -0.056 4.056 8 C -0.342 4.342 9 C 0.166 3.834 10 C -0.468 4.468 11 H 0.100 0.900 12 C -0.154 4.154 13 N -0.336 5.336 14 Si 0.728 3.272 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.186 1.186 18 N -0.253 5.253 19 C 0.029 3.971 20 H 0.089 0.911 21 C -0.104 4.104 22 N -0.320 5.320 23 C -0.110 4.110 24 C -0.016 4.016 25 O -0.289 6.289 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.235 0.765 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.162 0.838 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.681 -0.465 -14.470 14.723 hybrid contribution -0.664 0.467 0.090 0.817 sum -3.346 0.002 -14.379 14.763 Atomic orbital electron populations 1.22256 0.96232 1.02576 1.01155 1.20613 0.93903 0.95760 0.83088 0.89598 1.44117 1.73883 1.12448 1.05967 1.18531 0.89675 0.87519 0.86863 1.20612 1.25227 0.95191 0.98556 1.20581 0.95246 0.96867 0.92928 1.21519 1.17547 0.97061 0.98034 1.18196 0.87214 0.88066 0.89913 1.19577 1.37274 0.94017 0.95903 0.89964 1.26044 0.94495 0.98250 0.96570 1.70157 1.29813 1.09828 1.23805 0.86397 0.79291 0.79471 0.82006 1.19543 1.20281 1.18635 1.68220 1.23546 1.35937 0.97561 1.22462 0.97920 0.83082 0.93620 0.91082 1.22646 0.99311 0.97807 0.90595 1.60505 1.62441 1.03976 1.05106 1.22626 0.97399 0.91147 0.99819 1.22624 1.00176 0.94538 0.84233 1.88067 1.71065 1.26820 1.42954 0.91856 0.91975 0.93125 0.76519 0.89165 0.89060 0.88827 0.91959 0.89492 0.93507 0.83771 0.94302 0.89890 0.92406 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.96 37.16 0.33 -2.17 16 2 C 0.17 2.83 2.13 -67.93 -0.14 2.68 16 3 H 0.09 1.38 6.43 -51.93 -0.33 1.04 16 4 N -0.73 -15.22 5.22 -53.90 -0.28 -15.50 16 5 C 0.41 10.32 7.63 -155.33 -1.18 9.14 16 6 C -0.37 -8.61 8.84 -38.87 -0.34 -8.95 16 7 C -0.03 -0.75 10.15 -39.40 -0.40 -1.15 16 8 C -0.32 -8.23 9.83 -38.65 -0.38 -8.61 16 9 C 0.29 8.34 6.55 -85.00 -0.56 7.79 16 10 C -0.44 -12.07 9.14 -37.74 -0.34 -12.41 16 11 H 0.08 2.14 7.85 -52.48 -0.41 1.72 16 12 C 0.07 1.87 5.50 -17.34 -0.10 1.78 16 13 N -0.71 -19.49 11.46 55.55 0.64 -18.85 16 14 Si 0.90 19.13 29.56 -169.99 -5.02 14.11 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 18 N -0.53 -15.03 7.89 -10.33 -0.08 -15.11 16 19 C 0.09 1.24 2.63 -26.68 -0.07 1.17 16 20 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 21 C 0.03 0.29 5.87 -3.71 -0.02 0.27 16 22 N -0.69 -6.87 6.92 -113.49 -0.79 -7.65 16 23 C 0.02 0.19 6.76 -3.71 -0.03 0.16 16 24 C 0.06 0.70 7.01 37.21 0.26 0.96 16 25 O -0.37 -5.44 9.33 -35.23 -0.33 -5.76 16 26 H 0.06 1.04 7.56 -51.93 -0.39 0.64 16 27 H 0.06 1.05 7.65 -51.93 -0.40 0.66 16 28 H 0.05 0.63 6.50 -51.93 -0.34 0.29 16 29 H 0.40 8.74 8.51 -40.82 -0.35 8.39 16 30 H 0.09 1.85 6.05 -52.49 -0.32 1.53 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 32 H 0.09 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.51 6.43 -51.93 -0.33 0.17 16 36 H 0.34 2.66 8.90 -39.29 -0.35 2.31 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -30.81 321.84 -9.73 -40.54 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.74 Total: 12.74 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.97 Total: -9.35 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.51 Total: -57.12 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.33 Total: -5.76 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.81 -9.73 -40.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170565302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.158 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds