Wall clock time and date at job start Mon Mar 30 2020 02:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47432 * 2 1 4 4 N 1.46504 * 109.46936 * 119.99348 * 2 1 3 5 5 C 1.38824 * 120.00180 * 275.00112 * 4 2 1 6 6 C 1.39794 * 119.58278 * 359.97438 * 5 4 2 7 7 C 1.38594 * 119.49223 * 180.02562 * 6 5 4 8 8 C 1.38386 * 118.67809 * 359.97438 * 7 6 5 9 9 C 1.40556 * 119.15147 * 0.02562 * 8 7 6 10 10 C 1.41314 * 119.78344 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00454 * 0.02562 * 10 9 8 12 12 C 1.40027 * 119.99967 * 180.02562 * 10 9 8 13 13 N 1.30744 * 119.99836 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00204 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47092 * 89.99805 * 14 12 10 16 16 H 1.48504 * 109.47151 * 209.99599 * 14 12 10 17 17 H 1.48499 * 109.47021 * 329.99549 * 14 12 10 18 18 N 1.31951 * 119.58500 * 179.72849 * 5 4 2 19 19 C 1.53003 * 109.47176 * 239.99029 * 2 1 3 20 20 H 1.08999 * 109.50692 * 185.08519 * 19 2 1 21 21 C 1.53097 * 109.50130 * 65.00324 * 19 2 1 22 22 N 1.47016 * 109.25580 * 183.16910 * 21 19 2 23 23 C 1.47015 * 110.75095 * 58.61926 * 22 21 19 24 24 C 1.53098 * 109.25723 * 301.38182 * 23 22 21 25 25 O 1.43014 * 109.54072 * 305.20006 * 19 2 1 26 26 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47192 * 300.00656 * 1 2 3 28 28 H 1.09005 * 109.46631 * 60.00662 * 1 2 3 29 29 H 0.97008 * 119.99846 * 94.99970 * 4 2 1 30 30 H 1.08002 * 120.25583 * 359.97438 * 6 5 4 31 31 H 1.08001 * 120.66266 * 179.97438 * 7 6 5 32 32 H 1.08007 * 120.42158 * 180.02562 * 8 7 6 33 33 H 0.96998 * 120.00053 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.50984 * 63.24033 * 21 19 2 35 35 H 1.08996 * 109.54131 * 303.12739 * 21 19 2 36 36 H 1.00899 * 110.99921 * 182.39231 * 22 21 19 37 37 H 1.08999 * 109.50673 * 61.31448 * 23 22 21 38 38 H 1.09004 * 109.50788 * 181.44864 * 23 22 21 39 39 H 1.08997 * 109.51060 * 296.91507 * 24 23 22 40 40 H 1.09000 * 109.51173 * 176.78603 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1509 0.0021 2.3921 6 6 1.8164 1.3585 2.4447 7 6 1.9500 2.0483 3.6394 8 6 2.4133 1.3671 4.7513 9 6 2.7331 0.0034 4.6348 10 6 3.2079 -0.7050 5.7616 11 1 3.3237 -0.1987 6.7085 12 6 3.5284 -2.0636 5.6504 13 7 3.3878 -2.6768 4.5043 14 14 4.1553 -3.0003 7.1400 15 1 3.0063 -3.5866 7.8758 16 1 5.0644 -4.0869 6.6949 17 1 4.8937 -2.0721 8.0336 18 7 2.5863 -0.6292 3.4658 19 6 2.0400 -0.7215 -1.2491 20 1 3.1262 -0.8013 -1.2053 21 6 1.6354 0.0685 -2.4966 22 7 2.0615 -0.6675 -3.6959 23 6 1.4549 -2.0063 -3.7283 24 6 1.8613 -2.7754 -2.4685 25 8 1.4670 -2.0302 -1.3131 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 2.2490 -1.6317 1.1528 30 1 1.4575 1.8651 1.5611 31 1 1.6974 3.0965 3.7013 32 1 2.5278 1.8769 5.6966 33 1 3.6094 -3.6180 4.4274 34 1 2.1163 1.0466 -2.4799 35 1 0.5530 0.1952 -2.5127 36 1 1.8421 -0.1507 -4.5342 37 1 0.3695 -1.9133 -3.7637 38 1 1.8040 -2.5427 -4.6107 39 1 2.9422 -2.9151 -2.4600 40 1 1.3681 -3.7474 -2.4604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170565302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:39 Heat of formation + Delta-G solvation = -22.377191 kcal Electronic energy + Delta-G solvation = -21698.661932 eV Core-core repulsion = 18512.365994 eV Total energy + Delta-G solvation = -3186.295938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85146 -39.94183 -37.24187 -35.56677 -35.26290 -33.32275 -32.14622 -30.71886 -29.50717 -27.49752 -27.21363 -25.29208 -23.53532 -23.11768 -21.82722 -20.93973 -19.23498 -18.36007 -17.55902 -17.31940 -16.73183 -16.48666 -16.26179 -15.81875 -15.51966 -15.33865 -15.02780 -14.99224 -14.53692 -14.47535 -13.79218 -13.69997 -13.49136 -12.96377 -12.88806 -12.70553 -12.59693 -12.54059 -12.30293 -12.12591 -11.84925 -11.70491 -11.56177 -11.25893 -10.70152 -10.64115 -9.82132 -9.49227 -9.41118 -8.26612 -8.20396 -6.46271 1.08388 1.37856 1.41268 1.54855 1.59528 2.25770 2.53275 2.77420 2.94851 3.17073 3.79683 3.89397 4.02458 4.03892 4.10460 4.24680 4.29109 4.40672 4.44015 4.48794 4.65189 4.73187 4.79329 4.85124 4.92385 4.95096 4.99531 5.03129 5.04682 5.18811 5.39054 5.42401 5.74469 5.80661 5.99210 6.10066 6.20261 6.24841 6.37306 6.60004 6.85751 6.96719 7.24893 8.37742 8.53764 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022562 B = 0.004493 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.751355 B = 6229.876397 C = 7228.831305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.170 3.830 3 H 0.093 0.907 4 N -0.726 5.726 5 C 0.397 3.603 6 C -0.365 4.365 7 C -0.029 4.029 8 C -0.346 4.346 9 C 0.259 3.741 10 C -0.474 4.474 11 H 0.086 0.914 12 C 0.026 3.974 13 N -0.753 5.753 14 Si 0.986 3.014 15 H -0.264 1.264 16 H -0.269 1.269 17 H -0.256 1.256 18 N -0.568 5.568 19 C 0.094 3.906 20 H 0.052 0.948 21 C 0.034 3.966 22 N -0.695 5.695 23 C 0.025 3.975 24 C 0.053 3.947 25 O -0.395 6.395 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.391 0.609 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.101 0.899 33 H 0.275 0.725 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.361 0.639 37 H 0.043 0.957 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 1.337 -16.139 16.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.064 3.936 3 H 0.111 0.889 4 N -0.360 5.360 5 C 0.156 3.844 6 C -0.391 4.391 7 C -0.054 4.054 8 C -0.369 4.369 9 C 0.132 3.868 10 C -0.506 4.506 11 H 0.104 0.896 12 C -0.196 4.196 13 N -0.376 5.376 14 Si 0.806 3.194 15 H -0.189 1.189 16 H -0.194 1.194 17 H -0.179 1.179 18 N -0.290 5.290 19 C 0.035 3.965 20 H 0.070 0.930 21 C -0.096 4.096 22 N -0.329 5.329 23 C -0.105 4.105 24 C -0.024 4.024 25 O -0.314 6.314 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.224 0.776 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.181 0.819 37 H 0.061 0.939 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.159 0.145 -16.011 16.320 hybrid contribution -0.566 0.322 0.396 0.763 sum -3.725 0.467 -15.615 16.060 Atomic orbital electron populations 1.22136 0.95156 1.01879 1.01903 1.20894 0.94579 0.95953 0.82201 0.88930 1.44339 1.73299 1.12079 1.06235 1.18983 0.89397 0.88699 0.87332 1.20966 1.23815 0.94576 0.99712 1.21013 0.93631 0.98637 0.92069 1.21683 1.19102 0.96615 0.99463 1.18678 0.88038 0.89537 0.90531 1.19944 1.38996 0.95432 0.96221 0.89573 1.26968 0.94100 0.98632 0.99869 1.70269 1.30786 1.10367 1.26152 0.85169 0.78754 0.77837 0.77636 1.18855 1.19361 1.17911 1.68181 1.25048 1.37307 0.98496 1.22296 0.96628 0.83508 0.94040 0.92999 1.22534 0.99795 0.97765 0.89539 1.60458 1.62713 1.04324 1.05380 1.22604 0.97608 0.90847 0.99400 1.22854 0.99951 0.95288 0.84290 1.88029 1.71277 1.27293 1.44837 0.93274 0.93787 0.89656 0.77579 0.86013 0.85177 0.88048 0.91476 0.88194 0.92742 0.81925 0.93904 0.87633 0.93235 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 8.96 71.98 0.65 -3.78 16 2 C 0.17 5.34 2.13 44.99 0.10 5.44 16 3 H 0.09 2.79 6.43 -2.39 -0.02 2.77 16 4 N -0.73 -30.81 5.22 -324.45 -1.69 -32.51 16 5 C 0.40 20.07 7.63 133.42 1.02 21.09 16 6 C -0.37 -16.64 8.84 22.73 0.20 -16.44 16 7 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 8 C -0.35 -18.12 9.83 22.87 0.22 -17.89 16 9 C 0.26 15.28 6.55 40.18 0.26 15.54 16 10 C -0.47 -27.18 9.14 23.46 0.21 -26.97 16 11 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 12 C 0.03 1.38 5.50 85.29 0.47 1.85 16 13 N -0.75 -42.53 11.46 21.84 0.25 -42.28 16 14 Si 0.99 39.96 29.56 68.60 2.03 41.99 16 15 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 16 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 18 N -0.57 -33.25 7.89 -186.59 -1.47 -34.73 16 19 C 0.09 2.56 2.63 30.63 0.08 2.64 16 20 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 21 C 0.03 0.66 5.87 86.31 0.51 1.17 16 22 N -0.70 -11.97 6.92 -512.98 -3.55 -15.52 16 23 C 0.02 0.40 6.76 86.31 0.58 0.99 16 24 C 0.05 1.14 7.01 72.01 0.50 1.64 16 25 O -0.40 -11.38 9.33 -148.98 -1.39 -12.77 16 26 H 0.05 1.57 7.56 -2.38 -0.02 1.55 16 27 H 0.04 1.43 7.65 -2.39 -0.02 1.41 16 28 H 0.08 1.88 6.50 -2.38 -0.02 1.86 16 29 H 0.39 17.77 8.51 -92.70 -0.79 16.98 16 30 H 0.12 4.68 6.05 -2.91 -0.02 4.66 16 31 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 32 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 33 H 0.27 14.08 8.29 -92.71 -0.77 13.31 16 34 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 0.99 6.43 -2.39 -0.02 0.98 16 36 H 0.36 4.37 8.90 -89.69 -0.80 3.57 16 37 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -69.17 321.84 -1.32 -70.49 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: -0.52 Total: 41.17 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 5.03 Total: -15.84 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -6.47 Total: -125.04 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.39 Total: -12.77 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -69.17 -1.32 -70.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170565302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.115 kcal (2) G-P(sol) polarization free energy of solvation -69.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds