Wall clock time and date at job start Mon Mar 30 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47609 * 2 1 4 4 N 1.46499 * 109.47103 * 119.99985 * 2 1 3 5 5 C 1.38828 * 120.00154 * 274.99730 * 4 2 1 6 6 C 1.39803 * 119.57953 * 0.02562 * 5 4 2 7 7 C 1.38600 * 119.48703 * 179.97438 * 6 5 4 8 8 C 1.38384 * 118.68269 * 0.02562 * 7 6 5 9 9 C 1.40558 * 119.14870 * 359.97438 * 8 7 6 10 10 C 1.41311 * 119.78161 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00148 * 0.02562 * 10 9 8 12 12 C 1.40030 * 120.00000 * 180.02562 * 10 9 8 13 13 N 1.30747 * 119.99971 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00194 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47413 * 59.99569 * 14 12 10 16 16 H 1.48504 * 109.47101 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47322 * 299.99512 * 14 12 10 18 18 N 1.31950 * 119.58929 * 179.72948 * 5 4 2 19 19 C 1.53001 * 109.47378 * 239.99905 * 2 1 3 20 20 H 1.08995 * 109.50781 * 64.91218 * 19 2 1 21 21 C 1.53095 * 109.50946 * 185.00121 * 19 2 1 22 22 N 1.47018 * 109.29409 * 176.80221 * 21 19 2 23 23 C 1.47014 * 110.75310 * 301.45410 * 22 21 19 24 24 C 1.53094 * 109.29450 * 58.54598 * 23 22 21 25 25 O 1.43015 * 109.25878 * 303.17597 * 24 23 22 26 26 H 1.09000 * 109.47357 * 59.99708 * 1 2 3 27 27 H 1.08999 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47391 * 300.00236 * 1 2 3 29 29 H 0.97000 * 120.00333 * 94.99972 * 4 2 1 30 30 H 1.07997 * 120.25612 * 0.02562 * 6 5 4 31 31 H 1.07997 * 120.65355 * 180.02562 * 7 6 5 32 32 H 1.08001 * 120.42819 * 180.02562 * 8 7 6 33 33 H 0.97000 * 120.00240 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.50646 * 296.76120 * 21 19 2 35 35 H 1.09003 * 109.50955 * 56.84673 * 21 19 2 36 36 H 1.00904 * 110.99343 * 65.18166 * 22 21 19 37 37 H 1.09006 * 109.46615 * 298.61027 * 23 22 21 38 38 H 1.08996 * 109.54154 * 178.53120 * 23 22 21 39 39 H 1.09007 * 109.50740 * 183.24618 * 24 23 22 40 40 H 1.08998 * 109.51019 * 63.10795 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1509 0.0019 2.3920 6 6 1.8154 1.3581 2.4450 7 6 1.9481 2.0475 3.6400 8 6 2.4125 1.3666 4.7516 9 6 2.7333 0.0031 4.6347 10 6 3.2092 -0.7051 5.7611 11 1 3.3251 -0.1987 6.7080 12 6 3.5306 -2.0635 5.6496 13 7 3.3899 -2.6766 4.5035 14 14 4.1591 -2.9998 7.1388 15 1 3.1376 -2.9601 8.2159 16 1 4.4242 -4.4112 6.7604 17 1 5.4147 -2.3729 7.6241 18 7 2.5864 -0.6294 3.4657 19 6 2.0400 -0.7213 -1.2492 20 1 1.7506 -0.1597 -2.1374 21 6 3.5658 -0.8316 -1.1887 22 7 4.0443 -1.5920 -2.3524 23 6 3.4419 -2.9327 -2.3822 24 6 1.9174 -2.8013 -2.4307 25 8 1.4742 -2.0334 -1.3086 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.2489 -1.6318 1.1527 30 1 1.4549 1.8644 1.5618 31 1 1.6940 3.0953 3.7024 32 1 2.5263 1.8761 5.6971 33 1 3.6122 -3.6176 4.4263 34 1 4.0036 0.1665 -1.2010 35 1 3.8575 -1.3458 -0.2729 36 1 3.8597 -1.0941 -3.2104 37 1 3.7316 -3.4812 -1.4858 38 1 3.7893 -3.4690 -3.2652 39 1 1.4652 -3.7926 -2.3947 40 1 1.6244 -2.3001 -3.3532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170565304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:43 Heat of formation + Delta-G solvation = -1.044184 kcal Electronic energy + Delta-G solvation = -21965.954973 eV Core-core repulsion = 18780.584104 eV Total energy + Delta-G solvation = -3185.370870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88942 -38.17264 -35.77699 -34.50208 -33.38944 -31.59425 -30.34475 -29.54018 -27.94860 -26.27535 -25.30134 -23.87174 -21.90527 -21.35221 -21.15659 -19.72356 -17.36430 -16.76744 -16.34621 -16.09690 -15.52628 -14.97241 -14.82115 -14.71227 -14.26100 -13.98315 -13.46771 -13.08980 -12.82150 -12.65161 -12.53304 -11.91539 -11.83732 -11.77910 -11.51096 -11.33172 -11.13024 -11.04041 -10.96434 -10.78763 -10.54971 -10.35286 -10.15255 -9.86688 -9.45578 -8.85686 -8.29369 -7.86251 -7.44628 -6.44352 -6.27193 -4.42472 2.93381 3.13544 3.16181 3.28876 3.34625 3.67508 4.02313 4.08874 4.20864 4.67883 4.81936 4.88878 4.94240 5.09959 5.13549 5.25691 5.50736 5.52740 5.65101 5.77020 5.84002 5.98961 6.12615 6.16131 6.19783 6.26746 6.56776 6.70764 6.74638 6.90928 6.94502 6.98727 7.12298 7.18683 7.30718 7.65305 7.86567 7.97669 8.22148 8.42890 8.76429 8.85757 9.18399 10.30528 10.46046 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.005307 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.503523 B = 5274.958055 C = 6315.107518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.176 3.824 3 H 0.087 0.913 4 N -0.726 5.726 5 C 0.414 3.586 6 C -0.370 4.370 7 C -0.032 4.032 8 C -0.318 4.318 9 C 0.293 3.707 10 C -0.435 4.435 11 H 0.082 0.918 12 C 0.072 3.928 13 N -0.714 5.714 14 Si 0.904 3.096 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.266 1.266 18 N -0.531 5.531 19 C 0.049 3.951 20 H 0.062 0.938 21 C 0.027 3.973 22 N -0.683 5.683 23 C 0.019 3.981 24 C 0.023 3.977 25 O -0.366 6.366 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.399 0.601 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.270 0.730 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.335 0.665 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 -0.012 -13.499 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.068 3.932 3 H 0.104 0.896 4 N -0.363 5.363 5 C 0.174 3.826 6 C -0.396 4.396 7 C -0.056 4.056 8 C -0.342 4.342 9 C 0.166 3.834 10 C -0.467 4.467 11 H 0.100 0.900 12 C -0.154 4.154 13 N -0.336 5.336 14 Si 0.729 3.271 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.190 1.190 18 N -0.253 5.253 19 C -0.011 4.011 20 H 0.079 0.921 21 C -0.103 4.103 22 N -0.310 5.310 23 C -0.111 4.111 24 C -0.056 4.056 25 O -0.285 6.285 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.234 0.766 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.152 0.848 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.011 -1.230 -13.290 13.385 hybrid contribution -0.708 0.445 0.119 0.844 sum -1.719 -0.786 -13.171 13.306 Atomic orbital electron populations 1.22199 0.96118 1.02569 1.01244 1.20620 0.93880 0.95631 0.83064 0.89562 1.44143 1.73847 1.12361 1.05972 1.18525 0.89700 0.87494 0.86863 1.20612 1.25208 0.95239 0.98539 1.20580 0.95229 0.96866 0.92938 1.21517 1.17532 0.97072 0.98033 1.18183 0.87224 0.88047 0.89909 1.19538 1.37250 0.94029 0.95901 0.90026 1.26040 0.94501 0.98236 0.96585 1.70144 1.29681 1.09904 1.23833 0.86455 0.80074 0.78505 0.82099 1.19059 1.20391 1.19041 1.68216 1.23572 1.35913 0.97553 1.23148 0.94799 0.84634 0.98509 0.92060 1.22716 0.92514 0.99850 0.95225 1.60875 1.60669 1.03754 1.05738 1.22683 0.92602 0.91963 1.03844 1.23246 0.96107 0.96984 0.89229 1.88140 1.67894 1.25906 1.46555 0.93212 0.91878 0.91904 0.76570 0.89197 0.89093 0.88850 0.91927 0.89662 0.88549 0.84788 0.89571 0.89954 0.88494 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.20 37.15 0.34 -2.12 16 2 C 0.18 2.77 2.17 -67.93 -0.15 2.62 16 3 H 0.09 1.34 6.44 -51.93 -0.33 1.01 16 4 N -0.73 -14.61 4.42 -53.91 -0.24 -14.85 16 5 C 0.41 10.09 7.63 -155.32 -1.18 8.91 16 6 C -0.37 -8.48 8.84 -38.86 -0.34 -8.83 16 7 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 8 C -0.32 -8.17 9.83 -38.65 -0.38 -8.55 16 9 C 0.29 8.27 6.55 -85.00 -0.56 7.71 16 10 C -0.44 -11.97 9.14 -37.74 -0.34 -12.31 16 11 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 12 C 0.07 1.86 5.50 -17.34 -0.10 1.77 16 13 N -0.71 -19.29 11.46 55.55 0.64 -18.65 16 14 Si 0.90 19.06 29.56 -169.99 -5.02 14.04 16 15 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 N -0.53 -14.80 7.89 -10.33 -0.08 -14.88 16 19 C 0.05 0.65 2.59 -26.68 -0.07 0.58 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 C 0.03 0.36 5.88 -3.71 -0.02 0.34 16 22 N -0.68 -7.90 6.93 -113.49 -0.79 -8.68 16 23 C 0.02 0.20 6.76 -3.71 -0.03 0.18 16 24 C 0.02 0.24 7.01 37.21 0.26 0.50 16 25 O -0.37 -5.15 9.33 -35.23 -0.33 -5.48 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.02 7.57 -51.93 -0.39 0.63 16 28 H 0.06 1.06 7.64 -51.93 -0.40 0.66 16 29 H 0.40 8.47 7.98 -40.82 -0.33 8.14 16 30 H 0.09 1.82 6.04 -52.49 -0.32 1.50 16 31 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.27 6.67 8.29 -40.82 -0.34 6.33 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.10 1.61 7.04 -51.93 -0.37 1.25 16 36 H 0.34 3.16 8.89 -39.29 -0.35 2.82 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -30.03 323.00 -9.75 -39.79 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -5.83 Total: 14.20 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.97 Total: -10.34 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.47 Total: -57.07 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.33 Total: -5.48 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.03 -9.75 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170565304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.744 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds