Wall clock time and date at job start Mon Mar 30 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47609 * 2 1 4 4 N 1.46499 * 109.47103 * 119.99985 * 2 1 3 5 5 C 1.38828 * 120.00154 * 274.99730 * 4 2 1 6 6 C 1.39803 * 119.57953 * 0.02562 * 5 4 2 7 7 C 1.38600 * 119.48703 * 179.97438 * 6 5 4 8 8 C 1.38384 * 118.68269 * 0.02562 * 7 6 5 9 9 C 1.40558 * 119.14870 * 359.97438 * 8 7 6 10 10 C 1.41311 * 119.78161 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00148 * 0.02562 * 10 9 8 12 12 C 1.40030 * 120.00000 * 180.02562 * 10 9 8 13 13 N 1.30747 * 119.99971 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00194 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47413 * 59.99569 * 14 12 10 16 16 H 1.48504 * 109.47101 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47322 * 299.99512 * 14 12 10 18 18 N 1.31950 * 119.58929 * 179.72948 * 5 4 2 19 19 C 1.53001 * 109.47378 * 239.99905 * 2 1 3 20 20 H 1.08995 * 109.50781 * 64.91218 * 19 2 1 21 21 C 1.53095 * 109.50946 * 185.00121 * 19 2 1 22 22 N 1.47018 * 109.29409 * 176.80221 * 21 19 2 23 23 C 1.47014 * 110.75310 * 301.45410 * 22 21 19 24 24 C 1.53094 * 109.29450 * 58.54598 * 23 22 21 25 25 O 1.43015 * 109.25878 * 303.17597 * 24 23 22 26 26 H 1.09000 * 109.47357 * 59.99708 * 1 2 3 27 27 H 1.08999 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47391 * 300.00236 * 1 2 3 29 29 H 0.97000 * 120.00333 * 94.99972 * 4 2 1 30 30 H 1.07997 * 120.25612 * 0.02562 * 6 5 4 31 31 H 1.07997 * 120.65355 * 180.02562 * 7 6 5 32 32 H 1.08001 * 120.42819 * 180.02562 * 8 7 6 33 33 H 0.97000 * 120.00240 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.50646 * 296.76120 * 21 19 2 35 35 H 1.09003 * 109.50955 * 56.84673 * 21 19 2 36 36 H 1.00904 * 110.99343 * 65.18166 * 22 21 19 37 37 H 1.09006 * 109.46615 * 298.61027 * 23 22 21 38 38 H 1.08996 * 109.54154 * 178.53120 * 23 22 21 39 39 H 1.09007 * 109.50740 * 183.24618 * 24 23 22 40 40 H 1.08998 * 109.51019 * 63.10795 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1509 0.0019 2.3920 6 6 1.8154 1.3581 2.4450 7 6 1.9481 2.0475 3.6400 8 6 2.4125 1.3666 4.7516 9 6 2.7333 0.0031 4.6347 10 6 3.2092 -0.7051 5.7611 11 1 3.3251 -0.1987 6.7080 12 6 3.5306 -2.0635 5.6496 13 7 3.3899 -2.6766 4.5035 14 14 4.1591 -2.9998 7.1388 15 1 3.1376 -2.9601 8.2159 16 1 4.4242 -4.4112 6.7604 17 1 5.4147 -2.3729 7.6241 18 7 2.5864 -0.6294 3.4657 19 6 2.0400 -0.7213 -1.2492 20 1 1.7506 -0.1597 -2.1374 21 6 3.5658 -0.8316 -1.1887 22 7 4.0443 -1.5920 -2.3524 23 6 3.4419 -2.9327 -2.3822 24 6 1.9174 -2.8013 -2.4307 25 8 1.4742 -2.0334 -1.3086 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.2489 -1.6318 1.1527 30 1 1.4549 1.8644 1.5618 31 1 1.6940 3.0953 3.7024 32 1 2.5263 1.8761 5.6971 33 1 3.6122 -3.6176 4.4263 34 1 4.0036 0.1665 -1.2010 35 1 3.8575 -1.3458 -0.2729 36 1 3.8597 -1.0941 -3.2104 37 1 3.7316 -3.4812 -1.4858 38 1 3.7893 -3.4690 -3.2652 39 1 1.4652 -3.7926 -2.3947 40 1 1.6244 -2.3001 -3.3532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170565304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:43 Heat of formation + Delta-G solvation = -22.087484 kcal Electronic energy + Delta-G solvation = -21966.867479 eV Core-core repulsion = 18780.584104 eV Total energy + Delta-G solvation = -3186.283376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99036 -39.94074 -37.24733 -35.52566 -35.24077 -33.11606 -32.11931 -30.86540 -29.65052 -27.43508 -27.08910 -24.88898 -23.49884 -23.01861 -22.42359 -21.19338 -19.21576 -18.28137 -17.47986 -17.29114 -16.71291 -16.48854 -16.38246 -15.85781 -15.63543 -15.49523 -15.10938 -14.61135 -14.45416 -14.02208 -13.68891 -13.54927 -13.40300 -12.89091 -12.81453 -12.71938 -12.66131 -12.57264 -12.33378 -12.13762 -12.02829 -11.88384 -11.72147 -11.29177 -11.10857 -10.64223 -9.81307 -9.40283 -9.23744 -8.23736 -8.20093 -6.45722 1.09614 1.38718 1.40688 1.52766 1.59946 2.25383 2.58817 2.78520 2.95186 3.17807 3.66109 3.79089 4.00733 4.08444 4.11452 4.19911 4.31407 4.40241 4.46612 4.50054 4.60966 4.72368 4.75922 4.89277 4.95217 4.96762 5.02462 5.03718 5.07224 5.18735 5.38309 5.42251 5.75094 5.79373 5.99844 6.10047 6.18514 6.24791 6.40048 6.61077 6.86229 6.97601 7.25987 8.38420 8.53840 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.005307 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.503523 B = 5274.958055 C = 6315.107518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.169 3.831 3 H 0.094 0.906 4 N -0.720 5.720 5 C 0.399 3.601 6 C -0.365 4.365 7 C -0.030 4.030 8 C -0.347 4.347 9 C 0.260 3.740 10 C -0.474 4.474 11 H 0.085 0.915 12 C 0.026 3.974 13 N -0.752 5.752 14 Si 0.984 3.016 15 H -0.260 1.260 16 H -0.270 1.270 17 H -0.259 1.259 18 N -0.568 5.568 19 C 0.060 3.940 20 H 0.095 0.905 21 C 0.033 3.967 22 N -0.686 5.686 23 C 0.021 3.979 24 C 0.022 3.978 25 O -0.393 6.393 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.390 0.610 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.100 0.900 33 H 0.274 0.726 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.352 0.648 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 0.458 -15.345 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.063 3.937 3 H 0.111 0.889 4 N -0.354 5.354 5 C 0.158 3.842 6 C -0.390 4.390 7 C -0.054 4.054 8 C -0.370 4.370 9 C 0.133 3.867 10 C -0.506 4.506 11 H 0.103 0.897 12 C -0.196 4.196 13 N -0.374 5.374 14 Si 0.805 3.195 15 H -0.184 1.184 16 H -0.194 1.194 17 H -0.183 1.183 18 N -0.290 5.290 19 C 0.000 4.000 20 H 0.112 0.888 21 C -0.097 4.097 22 N -0.316 5.316 23 C -0.109 4.109 24 C -0.056 4.056 25 O -0.313 6.313 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.224 0.776 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.171 0.829 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.384 -0.737 -15.197 15.278 hybrid contribution -0.645 0.348 0.515 0.896 sum -2.029 -0.389 -14.683 14.827 Atomic orbital electron populations 1.22098 0.95342 1.01845 1.01919 1.20939 0.94366 0.95988 0.82434 0.88859 1.44315 1.73109 1.11920 1.06080 1.18967 0.89257 0.88611 0.87368 1.20963 1.23779 0.94685 0.99619 1.21004 0.93667 0.98582 0.92146 1.21669 1.19245 0.96663 0.99423 1.18657 0.88016 0.89478 0.90565 1.19899 1.39030 0.95428 0.96235 0.89678 1.26951 0.94149 0.98625 0.99845 1.70261 1.30654 1.10356 1.26098 0.85244 0.79468 0.77041 0.77764 1.18421 1.19419 1.18346 1.68180 1.25085 1.37275 0.98485 1.23042 0.94082 0.84763 0.98073 0.88773 1.22513 0.93064 0.99681 0.94465 1.60803 1.60865 1.04096 1.05824 1.22689 0.92941 0.91436 1.03832 1.23426 0.95782 0.97370 0.89056 1.88105 1.68302 1.26460 1.48404 0.89725 0.93295 0.93909 0.77643 0.86053 0.85346 0.88202 0.91540 0.89207 0.92645 0.82875 0.92270 0.87194 0.87559 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.20 71.98 0.66 -3.70 16 2 C 0.17 5.07 2.17 44.99 0.10 5.17 16 3 H 0.09 2.68 6.44 -2.39 -0.02 2.66 16 4 N -0.72 -29.40 4.42 -324.46 -1.44 -30.83 16 5 C 0.40 19.78 7.63 133.42 1.02 20.80 16 6 C -0.36 -16.41 8.84 22.74 0.20 -16.21 16 7 C -0.03 -1.36 10.15 22.39 0.23 -1.14 16 8 C -0.35 -18.15 9.83 22.87 0.22 -17.92 16 9 C 0.26 15.24 6.55 40.18 0.26 15.51 16 10 C -0.47 -27.11 9.14 23.46 0.21 -26.90 16 11 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 12 C 0.03 1.38 5.50 85.29 0.47 1.85 16 13 N -0.75 -42.21 11.46 21.84 0.25 -41.96 16 14 Si 0.98 39.98 29.56 68.60 2.03 42.01 16 15 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 16 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 18 N -0.57 -32.88 7.89 -186.58 -1.47 -34.35 16 19 C 0.06 1.46 2.59 30.63 0.08 1.54 16 20 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 21 C 0.03 0.86 5.88 86.31 0.51 1.37 16 22 N -0.69 -14.66 6.93 -512.98 -3.56 -18.21 16 23 C 0.02 0.41 6.76 86.31 0.58 0.99 16 24 C 0.02 0.40 7.01 72.01 0.50 0.91 16 25 O -0.39 -10.48 9.33 -148.98 -1.39 -11.87 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.53 7.57 -2.39 -0.02 1.51 16 28 H 0.04 1.38 7.64 -2.39 -0.02 1.36 16 29 H 0.39 17.26 7.98 -92.71 -0.74 16.52 16 30 H 0.12 4.60 6.04 -2.91 -0.02 4.58 16 31 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 32 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 33 H 0.27 14.05 8.29 -92.71 -0.77 13.28 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.92 7.04 -2.39 -0.02 1.90 16 36 H 0.35 5.56 8.89 -89.69 -0.80 4.76 16 37 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -68.37 323.00 -1.00 -69.37 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.48 Total: 43.59 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 5.05 Total: -17.74 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -6.21 Total: -125.36 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -1.39 Total: -11.87 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -68.37 -1.00 -69.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170565304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.285 kcal (2) G-P(sol) polarization free energy of solvation -68.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds