Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46840 * 2 1 4 4 N 1.46503 * 109.46925 * 239.99988 * 2 1 3 5 5 C 1.32211 * 119.99850 * 113.91871 * 4 2 1 6 6 C 1.46914 * 120.83588 * 4.95758 * 5 4 2 7 7 C 1.34382 * 119.37251 * 179.70308 * 6 5 4 8 8 N 1.36417 * 121.21475 * 0.59886 * 7 6 5 9 9 H 0.97002 * 119.09142 * 179.67253 * 8 7 6 10 10 C 1.37769 * 121.82561 * 359.65154 * 8 7 6 11 11 C 1.40179 * 119.74839 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00388 * 200.87492 * 11 10 8 13 13 C 1.40351 * 119.99472 * 20.87833 * 11 10 8 14 14 N 1.30587 * 120.00367 * 18.74380 * 13 11 10 15 15 Si 1.86809 * 119.99867 * 198.74054 * 13 11 10 16 16 H 1.48496 * 109.46841 * 89.99872 * 15 13 11 17 17 H 1.48493 * 109.47080 * 209.99982 * 15 13 11 18 18 H 1.48505 * 109.46959 * 330.00310 * 15 13 11 19 19 C 1.39071 * 120.50866 * 0.04525 * 10 8 7 20 20 C 1.52997 * 109.47248 * 120.00033 * 2 1 3 21 21 H 1.08995 * 109.51031 * 60.09068 * 20 2 1 22 22 C 1.53104 * 109.50555 * 180.21691 * 20 2 1 23 23 N 1.47014 * 109.25538 * 176.78311 * 22 20 2 24 24 C 1.47009 * 110.75296 * 301.38008 * 23 22 20 25 25 C 1.53097 * 109.25525 * 58.62319 * 24 23 22 26 26 O 1.43012 * 109.50620 * 299.99844 * 20 2 1 27 27 H 1.09005 * 109.47337 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47155 * 299.99675 * 1 2 3 29 29 H 1.08998 * 109.47755 * 59.99971 * 1 2 3 30 30 H 1.08013 * 120.31446 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.39042 * 180.24838 * 7 6 5 32 32 H 0.97000 * 119.99928 * 179.97438 * 14 13 11 33 33 H 1.08003 * 120.62509 * 179.97438 * 19 10 8 34 34 H 1.08999 * 109.50505 * 296.71597 * 22 20 2 35 35 H 1.08998 * 109.50570 * 56.84907 * 22 20 2 36 36 H 1.00907 * 110.99699 * 177.60785 * 23 22 20 37 37 H 1.08999 * 109.51131 * 298.68366 * 24 23 22 38 38 H 1.09001 * 109.50693 * 178.55166 * 24 23 22 39 39 H 1.09001 * 109.50597 * 183.21673 * 25 24 23 40 40 H 1.08998 * 109.51346 * 63.08251 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.6763 -0.0184 -2.1253 6 6 3.0225 1.3957 -1.9286 7 6 3.6971 2.0490 -2.8898 8 7 4.0557 1.4266 -4.0495 9 1 4.5380 1.9290 -4.7248 10 6 3.7521 0.1042 -4.2882 11 6 4.1423 -0.4921 -5.4954 12 1 3.6428 -1.3842 -5.8433 13 6 5.1821 0.0703 -6.2519 14 7 6.0207 0.9009 -5.6932 15 14 5.3665 -0.3694 -8.0581 16 1 4.5840 0.5862 -8.8825 17 1 6.7992 -0.2961 -8.4416 18 1 4.8629 -1.7477 -8.2859 19 6 3.0612 -0.6437 -3.3409 20 6 2.0400 -0.7212 1.2492 21 1 1.6784 -1.7494 1.2490 22 6 3.5710 -0.7169 1.2527 23 7 4.0548 -1.3426 2.4920 24 6 3.5461 -0.6257 3.6704 25 6 2.0154 -0.6310 3.6426 26 8 1.5638 -0.0476 2.4174 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 2.7412 1.9043 -1.0181 31 1 3.9552 3.0875 -2.7438 32 1 6.7396 1.2892 -6.2160 33 1 2.8219 -1.6805 -3.5263 34 1 3.9385 -1.2787 0.3939 35 1 3.9322 0.3100 1.1984 36 1 5.0627 -1.3888 2.5042 37 1 3.9069 0.4027 3.6547 38 1 3.8953 -1.1209 4.5765 39 1 1.6341 -0.0519 4.4837 40 1 1.6535 -1.6568 3.7124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170570789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = -6.828630 kcal Electronic energy + Delta-G solvation = -21547.325423 eV Core-core repulsion = 18361.703721 eV Total energy + Delta-G solvation = -3185.621702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.21913 -38.54059 -35.45464 -34.34727 -33.86183 -31.76553 -30.61180 -29.56001 -27.58001 -26.25975 -25.80318 -23.61061 -21.89620 -21.37675 -20.23458 -19.34336 -18.07559 -16.67186 -16.59009 -16.08174 -15.41141 -14.89699 -14.60903 -14.44911 -14.11187 -14.03186 -13.77330 -13.58447 -12.99170 -12.80089 -12.61259 -12.03920 -11.79874 -11.63320 -11.50039 -11.38616 -11.09946 -10.96022 -10.82064 -10.60725 -10.54021 -10.25764 -10.01928 -9.73634 -9.44270 -9.22379 -8.34069 -8.28177 -7.50459 -7.33638 -6.00957 -4.80749 2.55588 2.71709 2.86043 2.90847 3.12889 3.61583 4.04403 4.27157 4.29908 4.59213 5.06292 5.22330 5.28666 5.33809 5.38024 5.55608 5.60600 5.75578 5.82804 5.88658 5.98506 6.11984 6.27193 6.32211 6.40457 6.51921 6.65644 6.66168 6.76705 6.80186 6.86104 6.99834 7.05726 7.37328 7.40114 7.54152 7.68665 7.75063 7.96277 8.23703 8.26685 8.77875 8.90230 9.65105 9.71596 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031273 B = 0.003845 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.115667 B = 7279.598187 C = 7531.500417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.094 3.906 3 H 0.038 0.962 4 N -0.661 5.661 5 C 0.289 3.711 6 C -0.304 4.304 7 C 0.126 3.874 8 N -0.603 5.603 9 H 0.413 0.587 10 C 0.330 3.670 11 C -0.465 4.465 12 H 0.104 0.896 13 C 0.077 3.923 14 N -0.811 5.811 15 Si 0.924 3.076 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.256 1.256 19 C -0.359 4.359 20 C 0.109 3.891 21 H 0.063 0.937 22 C 0.036 3.964 23 N -0.690 5.690 24 C 0.019 3.981 25 C 0.065 3.935 26 O -0.388 6.388 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.293 0.707 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.029 0.971 36 H 0.341 0.659 37 H 0.034 0.966 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 2.899 6.760 7.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.018 4.018 3 H 0.056 0.944 4 N -0.389 5.389 5 C 0.127 3.873 6 C -0.334 4.334 7 C -0.004 4.004 8 N -0.214 5.214 9 H 0.254 0.746 10 C 0.221 3.779 11 C -0.497 4.497 12 H 0.122 0.878 13 C -0.142 4.142 14 N -0.439 5.439 15 Si 0.747 3.253 16 H -0.189 1.189 17 H -0.200 1.200 18 H -0.179 1.179 19 C -0.388 4.388 20 C 0.051 3.949 21 H 0.081 0.919 22 C -0.093 4.093 23 N -0.321 5.321 24 C -0.110 4.110 25 C -0.013 4.013 26 O -0.306 6.306 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.134 0.866 31 H 0.147 0.853 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.048 0.952 36 H 0.158 0.842 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.052 1.868 7.070 7.388 hybrid contribution 1.500 1.687 -0.684 2.359 sum 0.449 3.556 6.386 7.323 Atomic orbital electron populations 1.21712 0.96012 1.01067 0.99866 1.21118 0.94426 0.95445 0.90842 0.94444 1.73399 1.29427 1.31623 1.04500 1.20215 0.87328 0.87353 0.92413 1.22319 1.11931 0.98403 1.00736 1.21240 0.95354 0.96473 0.87288 1.42093 1.52029 1.10735 1.16538 0.74627 1.17632 0.87359 0.80692 0.92168 1.19554 1.15505 1.11763 1.02914 0.87779 1.26222 0.93218 0.92928 1.01788 1.69336 1.11644 1.24710 1.38178 0.86015 0.78355 0.80806 0.80091 1.18895 1.19999 1.17919 1.20182 1.23871 0.99924 0.94853 1.22205 0.91392 0.96444 0.84835 0.91860 1.22543 0.97032 0.97452 0.92265 1.60592 1.14988 1.54388 1.02158 1.22592 0.97245 0.96850 0.94354 1.22537 0.92464 0.98651 0.87631 1.87936 1.72867 1.56033 1.13755 0.93136 0.93402 0.93707 0.86570 0.85273 0.89605 0.86832 0.88663 0.95231 0.84170 0.94756 0.90309 0.89207 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.37 37.16 0.35 -2.11 16 2 C 0.09 1.95 2.63 -67.93 -0.18 1.77 16 3 H 0.04 0.80 5.21 -51.93 -0.27 0.53 16 4 N -0.66 -15.61 9.53 -50.79 -0.48 -16.10 16 5 C 0.29 6.94 6.80 -82.74 -0.56 6.38 16 6 C -0.30 -6.46 9.40 -37.43 -0.35 -6.82 16 7 C 0.13 2.46 11.15 -16.87 -0.19 2.28 16 8 N -0.60 -12.96 4.90 -10.83 -0.05 -13.01 16 9 H 0.41 8.49 6.27 -40.82 -0.26 8.24 16 10 C 0.33 7.93 6.38 -84.16 -0.54 7.39 16 11 C -0.46 -10.82 9.02 -38.06 -0.34 -11.17 16 12 H 0.10 2.37 7.92 -52.49 -0.42 1.96 16 13 C 0.08 1.64 5.17 -17.29 -0.09 1.55 16 14 N -0.81 -17.36 11.10 55.57 0.62 -16.74 16 15 Si 0.92 16.10 29.60 -169.99 -5.03 11.07 16 16 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 17 H -0.28 -4.74 7.11 56.52 0.40 -4.33 16 18 H -0.26 -4.52 7.11 56.52 0.40 -4.11 16 19 C -0.36 -8.99 9.83 -37.82 -0.37 -9.37 16 20 C 0.11 2.10 2.57 -26.68 -0.07 2.03 16 21 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 22 C 0.04 0.67 5.84 -3.71 -0.02 0.64 16 23 N -0.69 -10.57 6.92 -113.50 -0.79 -11.36 16 24 C 0.02 0.25 6.76 -3.71 -0.03 0.23 16 25 C 0.06 0.89 7.01 37.21 0.26 1.15 16 26 O -0.39 -6.84 9.80 -35.23 -0.35 -7.18 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.84 7.68 -51.93 -0.40 0.44 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.12 2.32 5.87 -52.48 -0.31 2.02 16 31 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.29 5.64 8.29 -40.82 -0.34 5.30 16 33 H 0.11 2.91 8.06 -52.48 -0.42 2.49 16 34 H 0.10 1.97 7.72 -51.93 -0.40 1.57 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.34 4.55 8.90 -39.29 -0.35 4.20 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -26.37 324.23 -9.09 -35.45 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -5.76 Total: 19.01 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.13 Total: -6.04 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.71 Total: -57.20 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.35 Total: -7.18 kcal Atomic # 14 Polarization: 16.10 SS G_CDS: -5.03 Total: 11.07 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.37 -9.09 -35.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170570789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.626 kcal (2) G-P(sol) polarization free energy of solvation -26.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds