Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46840 * 2 1 4 4 N 1.46503 * 109.46925 * 239.99988 * 2 1 3 5 5 C 1.32211 * 119.99850 * 113.91871 * 4 2 1 6 6 C 1.46914 * 120.83588 * 4.95758 * 5 4 2 7 7 C 1.34382 * 119.37251 * 179.70308 * 6 5 4 8 8 N 1.36417 * 121.21475 * 0.59886 * 7 6 5 9 9 H 0.97002 * 119.09142 * 179.67253 * 8 7 6 10 10 C 1.37769 * 121.82561 * 359.65154 * 8 7 6 11 11 C 1.40179 * 119.74839 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00388 * 200.87492 * 11 10 8 13 13 C 1.40351 * 119.99472 * 20.87833 * 11 10 8 14 14 N 1.30587 * 120.00367 * 18.74380 * 13 11 10 15 15 Si 1.86809 * 119.99867 * 198.74054 * 13 11 10 16 16 H 1.48496 * 109.46841 * 89.99872 * 15 13 11 17 17 H 1.48493 * 109.47080 * 209.99982 * 15 13 11 18 18 H 1.48505 * 109.46959 * 330.00310 * 15 13 11 19 19 C 1.39071 * 120.50866 * 0.04525 * 10 8 7 20 20 C 1.52997 * 109.47248 * 120.00033 * 2 1 3 21 21 H 1.08995 * 109.51031 * 60.09068 * 20 2 1 22 22 C 1.53104 * 109.50555 * 180.21691 * 20 2 1 23 23 N 1.47014 * 109.25538 * 176.78311 * 22 20 2 24 24 C 1.47009 * 110.75296 * 301.38008 * 23 22 20 25 25 C 1.53097 * 109.25525 * 58.62319 * 24 23 22 26 26 O 1.43012 * 109.50620 * 299.99844 * 20 2 1 27 27 H 1.09005 * 109.47337 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47155 * 299.99675 * 1 2 3 29 29 H 1.08998 * 109.47755 * 59.99971 * 1 2 3 30 30 H 1.08013 * 120.31446 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.39042 * 180.24838 * 7 6 5 32 32 H 0.97000 * 119.99928 * 179.97438 * 14 13 11 33 33 H 1.08003 * 120.62509 * 179.97438 * 19 10 8 34 34 H 1.08999 * 109.50505 * 296.71597 * 22 20 2 35 35 H 1.08998 * 109.50570 * 56.84907 * 22 20 2 36 36 H 1.00907 * 110.99699 * 177.60785 * 23 22 20 37 37 H 1.08999 * 109.51131 * 298.68366 * 24 23 22 38 38 H 1.09001 * 109.50693 * 178.55166 * 24 23 22 39 39 H 1.09001 * 109.50597 * 183.21673 * 25 24 23 40 40 H 1.08998 * 109.51346 * 63.08251 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.6763 -0.0184 -2.1253 6 6 3.0225 1.3957 -1.9286 7 6 3.6971 2.0490 -2.8898 8 7 4.0557 1.4266 -4.0495 9 1 4.5380 1.9290 -4.7248 10 6 3.7521 0.1042 -4.2882 11 6 4.1423 -0.4921 -5.4954 12 1 3.6428 -1.3842 -5.8433 13 6 5.1821 0.0703 -6.2519 14 7 6.0207 0.9009 -5.6932 15 14 5.3665 -0.3694 -8.0581 16 1 4.5840 0.5862 -8.8825 17 1 6.7992 -0.2961 -8.4416 18 1 4.8629 -1.7477 -8.2859 19 6 3.0612 -0.6437 -3.3409 20 6 2.0400 -0.7212 1.2492 21 1 1.6784 -1.7494 1.2490 22 6 3.5710 -0.7169 1.2527 23 7 4.0548 -1.3426 2.4920 24 6 3.5461 -0.6257 3.6704 25 6 2.0154 -0.6310 3.6426 26 8 1.5638 -0.0476 2.4174 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 2.7412 1.9043 -1.0181 31 1 3.9552 3.0875 -2.7438 32 1 6.7396 1.2892 -6.2160 33 1 2.8219 -1.6805 -3.5263 34 1 3.9385 -1.2787 0.3939 35 1 3.9322 0.3100 1.1984 36 1 5.0627 -1.3888 2.5042 37 1 3.9069 0.4027 3.6547 38 1 3.8953 -1.1209 4.5765 39 1 1.6341 -0.0519 4.4837 40 1 1.6535 -1.6568 3.7124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170570789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = -25.700507 kcal Electronic energy + Delta-G solvation = -21548.143769 eV Core-core repulsion = 18361.703721 eV Total energy + Delta-G solvation = -3186.440048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63445 -40.18601 -37.08789 -35.68987 -35.49155 -33.37771 -32.32411 -30.94581 -29.27456 -27.83324 -27.32471 -24.94159 -23.56212 -23.01521 -21.59500 -20.96240 -19.79169 -18.38517 -17.90888 -17.55693 -16.96617 -16.46991 -16.06221 -15.75206 -15.55292 -15.42533 -15.29235 -15.02706 -14.55912 -14.46555 -14.01557 -13.61721 -13.36210 -13.22103 -12.90457 -12.82273 -12.74723 -12.41381 -12.38404 -12.20496 -11.94056 -11.78014 -11.58447 -11.33020 -11.04866 -10.65431 -10.01159 -9.59273 -9.24765 -8.99524 -7.75587 -6.63876 0.94431 1.07422 1.42366 1.55620 1.61850 2.16004 2.52847 2.75888 2.91947 3.08068 3.51878 3.81537 4.00133 4.03047 4.10542 4.13334 4.25513 4.30105 4.47840 4.49890 4.67269 4.71618 4.76353 4.78414 4.91324 4.95799 4.99141 5.03506 5.09566 5.15747 5.26530 5.39916 5.64858 5.77923 5.83213 5.99463 6.11116 6.23909 6.26787 6.49345 6.50778 7.01252 7.19560 7.96247 8.01876 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031273 B = 0.003845 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.115667 B = 7279.598187 C = 7531.500417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.091 3.909 3 H 0.033 0.967 4 N -0.686 5.686 5 C 0.273 3.727 6 C -0.321 4.321 7 C 0.139 3.861 8 N -0.602 5.602 9 H 0.418 0.582 10 C 0.320 3.680 11 C -0.493 4.493 12 H 0.096 0.904 13 C 0.051 3.949 14 N -0.820 5.820 15 Si 0.995 3.005 16 H -0.254 1.254 17 H -0.264 1.264 18 H -0.263 1.263 19 C -0.402 4.402 20 C 0.120 3.880 21 H 0.044 0.956 22 C 0.049 3.951 23 N -0.695 5.695 24 C 0.020 3.980 25 C 0.054 3.946 26 O -0.398 6.398 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.129 0.871 31 H 0.181 0.819 32 H 0.307 0.693 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.021 0.979 36 H 0.352 0.648 37 H 0.037 0.963 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.747 4.481 7.126 8.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.022 4.022 3 H 0.051 0.949 4 N -0.415 5.415 5 C 0.111 3.889 6 C -0.351 4.351 7 C 0.010 3.990 8 N -0.214 5.214 9 H 0.259 0.741 10 C 0.211 3.789 11 C -0.524 4.524 12 H 0.114 0.886 13 C -0.167 4.167 14 N -0.446 5.446 15 Si 0.814 3.186 16 H -0.179 1.179 17 H -0.188 1.188 18 H -0.187 1.187 19 C -0.431 4.431 20 C 0.062 3.938 21 H 0.062 0.938 22 C -0.081 4.081 23 N -0.327 5.327 24 C -0.109 4.109 25 C -0.022 4.022 26 O -0.317 6.317 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.147 0.853 31 H 0.198 0.802 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.171 0.829 37 H 0.055 0.945 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.043 3.465 7.477 8.241 hybrid contribution 1.253 1.185 -0.742 1.877 sum 1.210 4.650 6.735 8.273 Atomic orbital electron populations 1.21631 0.94934 1.00844 1.00390 1.21190 0.95272 0.95069 0.90628 0.94881 1.73294 1.29566 1.33076 1.05562 1.20341 0.87545 0.88965 0.92032 1.22339 1.13401 0.97249 1.02082 1.21886 0.93217 0.98274 0.85661 1.42100 1.52106 1.09839 1.17400 0.74057 1.17731 0.87155 0.81886 0.92113 1.19752 1.16759 1.12337 1.03586 0.88610 1.26928 0.92022 0.92407 1.05349 1.69310 1.11512 1.23988 1.39834 0.84975 0.78747 0.80152 0.74677 1.17857 1.18837 1.18708 1.20112 1.26964 0.99336 0.96671 1.21863 0.91677 0.95103 0.85196 0.93813 1.22227 0.96554 0.96497 0.92821 1.60562 1.15989 1.54442 1.01717 1.22715 0.96650 0.97192 0.94354 1.22906 0.93207 0.99303 0.86808 1.87900 1.73222 1.56197 1.14361 0.93709 0.91547 0.94354 0.85341 0.80154 0.88120 0.89484 0.91898 0.96040 0.82902 0.94516 0.86951 0.85775 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 9.37 71.98 0.67 -3.97 16 2 C 0.09 3.85 2.63 44.99 0.12 3.97 16 3 H 0.03 1.43 5.21 -2.38 -0.01 1.42 16 4 N -0.69 -34.08 9.53 -314.60 -3.00 -37.08 16 5 C 0.27 13.75 6.80 42.30 0.29 14.04 16 6 C -0.32 -13.74 9.40 23.66 0.22 -13.52 16 7 C 0.14 5.25 11.15 83.10 0.93 6.18 16 8 N -0.60 -25.73 4.90 -188.18 -0.92 -26.65 16 9 H 0.42 16.70 6.27 -92.71 -0.58 16.12 16 10 C 0.32 15.88 6.38 38.88 0.25 16.13 16 11 C -0.49 -23.51 9.02 23.26 0.21 -23.30 16 12 H 0.10 4.58 7.92 -2.91 -0.02 4.56 16 13 C 0.05 2.14 5.17 85.39 0.44 2.58 16 14 N -0.82 -33.88 11.10 21.89 0.24 -33.63 16 15 Si 0.99 31.81 29.60 68.60 2.03 33.84 16 16 H -0.25 -7.76 7.11 99.48 0.71 -7.05 16 17 H -0.26 -7.98 7.11 99.48 0.71 -7.27 16 18 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 19 C -0.40 -21.41 9.83 23.41 0.23 -21.18 16 20 C 0.12 4.68 2.57 30.63 0.08 4.76 16 21 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 22 C 0.05 1.83 5.84 86.32 0.50 2.34 16 23 N -0.69 -20.69 6.92 -512.99 -3.55 -24.24 16 24 C 0.02 0.47 6.76 86.31 0.58 1.06 16 25 C 0.05 1.37 7.01 72.01 0.50 1.88 16 26 O -0.40 -13.60 9.80 -148.98 -1.46 -15.06 16 27 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.07 2.28 7.68 -2.39 -0.02 2.26 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.13 5.10 5.87 -2.90 -0.02 5.08 16 31 H 0.18 4.88 8.06 -2.91 -0.02 4.86 16 32 H 0.31 11.10 8.29 -92.71 -0.77 10.33 16 33 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 34 H 0.06 2.75 7.72 -2.39 -0.02 2.73 16 35 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.35 9.06 8.90 -89.69 -0.80 8.26 16 37 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -59.48 324.23 -1.95 -61.42 By element: Atomic # 1 Polarization: 50.75 SS G_CDS: -0.32 Total: 50.43 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.03 Total: -9.03 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -7.23 Total: -121.60 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -1.46 Total: -15.06 kcal Atomic # 14 Polarization: 31.81 SS G_CDS: 2.03 Total: 33.84 kcal Total: -59.48 -1.95 -61.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170570789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.723 kcal (2) G-P(sol) polarization free energy of solvation -59.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds