Wall clock time and date at job start Mon Mar 30 2020 02:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47065 * 2 1 4 4 N 1.46505 * 109.47263 * 119.99683 * 2 1 3 5 5 C 1.32209 * 120.00153 * 246.13327 * 4 2 1 6 6 C 1.46923 * 120.83325 * 354.81116 * 5 4 2 7 7 C 1.34375 * 119.37116 * 179.97438 * 6 5 4 8 8 N 1.36424 * 121.21790 * 359.97438 * 7 6 5 9 9 H 0.97003 * 119.08744 * 180.02562 * 8 7 6 10 10 C 1.37765 * 121.82441 * 0.02696 * 8 7 6 11 11 C 1.40182 * 119.74565 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99695 * 200.69363 * 11 10 8 13 13 C 1.40346 * 119.99787 * 20.68575 * 11 10 8 14 14 N 1.30581 * 120.00488 * 18.67663 * 13 11 10 15 15 Si 1.86806 * 119.99916 * 198.66858 * 13 11 10 16 16 H 1.48504 * 109.46806 * 94.96618 * 15 13 11 17 17 H 1.48493 * 109.47293 * 214.96794 * 15 13 11 18 18 H 1.48501 * 109.46986 * 334.96708 * 15 13 11 19 19 C 1.39074 * 120.51206 * 359.69163 * 10 8 7 20 20 C 1.53001 * 109.47491 * 239.99971 * 2 1 3 21 21 H 1.08992 * 109.50727 * 64.99714 * 20 2 1 22 22 C 1.53099 * 109.50798 * 185.08769 * 20 2 1 23 23 N 1.47015 * 109.25830 * 176.78194 * 22 20 2 24 24 C 1.47014 * 110.75250 * 301.38120 * 23 22 20 25 25 C 1.53105 * 109.25661 * 58.61620 * 24 23 22 26 26 O 1.43020 * 109.50187 * 304.91165 * 20 2 1 27 27 H 1.08997 * 109.47542 * 299.99829 * 1 2 3 28 28 H 1.08997 * 109.47201 * 60.00330 * 1 2 3 29 29 H 1.09009 * 109.46896 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.31440 * 0.02562 * 6 5 4 31 31 H 1.07994 * 119.38919 * 179.97438 * 7 6 5 32 32 H 0.96998 * 120.00604 * 179.97438 * 14 13 11 33 33 H 1.07992 * 120.62786 * 180.28793 * 19 10 8 34 34 H 1.08994 * 109.50400 * 296.71316 * 22 20 2 35 35 H 1.08999 * 109.50695 * 56.84697 * 22 20 2 36 36 H 1.00902 * 111.00043 * 65.15289 * 23 22 20 37 37 H 1.08996 * 109.51078 * 178.54634 * 24 23 22 38 38 H 1.08994 * 109.50674 * 298.68317 * 24 23 22 39 39 H 1.08993 * 109.50877 * 63.08533 * 25 24 23 40 40 H 1.09004 * 109.50575 * 183.17683 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.6755 -0.0182 2.1257 6 6 3.0251 1.3950 1.9274 7 6 3.6930 2.0504 2.8918 8 7 4.0518 1.4278 4.0515 9 1 4.5330 1.9306 4.7272 10 6 3.7496 0.1050 4.2895 11 6 4.1390 -0.4910 5.4971 12 1 4.2159 -1.5659 5.5686 13 6 4.4290 0.3091 6.6131 14 7 4.0014 1.5420 6.6614 15 14 5.4265 -0.3896 8.0295 16 1 6.8577 -0.0372 7.8481 17 1 4.9348 0.1799 9.3096 18 1 5.2801 -1.8672 8.0565 19 6 3.0551 -0.6418 3.3439 20 6 2.0401 -0.7212 -1.2492 21 1 1.7520 -0.1589 -2.1373 22 6 3.5657 -0.8335 -1.1876 23 7 4.0433 -1.5944 -2.3514 24 6 3.4401 -2.9348 -2.3806 25 6 1.9157 -2.8015 -2.4302 26 8 1.4718 -2.0323 -1.3090 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 2.7472 1.9025 1.0155 31 1 3.9505 3.0890 2.7462 32 1 4.2014 2.0949 7.4329 33 1 2.8132 -1.6776 3.5305 34 1 4.0047 0.1641 -1.1999 35 1 3.8561 -1.3484 -0.2719 36 1 3.8593 -1.0963 -3.2094 37 1 3.7874 -3.4711 -3.2636 38 1 3.7285 -3.4833 -1.4839 39 1 1.6240 -2.3002 -3.3530 40 1 1.4624 -3.7922 -2.3950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170570792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:55 Heat of formation + Delta-G solvation = -23.641898 kcal Electronic energy + Delta-G solvation = -21680.155361 eV Core-core repulsion = 18493.804581 eV Total energy + Delta-G solvation = -3186.350780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.68776 -40.16051 -37.02746 -35.59435 -35.35427 -33.36073 -32.29057 -30.90434 -29.25853 -27.76121 -27.09852 -24.81266 -23.50625 -22.90057 -22.30301 -20.81390 -19.74676 -18.35541 -17.52018 -17.40650 -16.95394 -16.60848 -16.25679 -15.81654 -15.67970 -15.61288 -15.22135 -14.54777 -14.43212 -13.97905 -13.62805 -13.56852 -13.36735 -13.19434 -12.89251 -12.76117 -12.69197 -12.38052 -12.32550 -12.21507 -11.96179 -11.93035 -11.74004 -11.33406 -11.20707 -10.85259 -9.97637 -9.23377 -9.09985 -8.97682 -7.67858 -6.60554 0.97063 1.14016 1.41681 1.55161 1.62674 2.16327 2.56861 2.92100 2.95969 3.21624 3.54222 3.80844 3.95765 4.02766 4.08782 4.16606 4.24849 4.32084 4.45560 4.51416 4.59578 4.74125 4.79891 4.82312 4.94873 4.98175 5.03484 5.08769 5.16543 5.17540 5.24667 5.47423 5.69465 5.80809 5.87083 6.02490 6.13633 6.38427 6.40680 6.52418 6.53562 7.05446 7.24049 8.03452 8.07233 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.004094 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.573882 B = 6837.038873 C = 7176.998470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.083 3.917 3 H 0.051 0.949 4 N -0.673 5.673 5 C 0.264 3.736 6 C -0.319 4.319 7 C 0.135 3.865 8 N -0.604 5.604 9 H 0.417 0.583 10 C 0.319 3.681 11 C -0.496 4.496 12 H 0.092 0.908 13 C 0.052 3.948 14 N -0.821 5.821 15 Si 0.994 3.006 16 H -0.253 1.253 17 H -0.264 1.264 18 H -0.265 1.265 19 C -0.403 4.403 20 C 0.078 3.922 21 H 0.064 0.936 22 C 0.044 3.956 23 N -0.686 5.686 24 C 0.025 3.975 25 C 0.015 3.985 26 O -0.386 6.386 27 H 0.031 0.969 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.136 0.864 31 H 0.182 0.818 32 H 0.306 0.694 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.349 0.651 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.137 2.767 -9.237 9.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.029 4.029 3 H 0.069 0.931 4 N -0.399 5.399 5 C 0.100 3.900 6 C -0.348 4.348 7 C 0.006 3.994 8 N -0.216 5.216 9 H 0.259 0.741 10 C 0.210 3.790 11 C -0.528 4.528 12 H 0.110 0.890 13 C -0.167 4.167 14 N -0.448 5.448 15 Si 0.814 3.186 16 H -0.178 1.178 17 H -0.188 1.188 18 H -0.189 1.189 19 C -0.432 4.432 20 C 0.019 3.981 21 H 0.082 0.918 22 C -0.086 4.086 23 N -0.315 5.315 24 C -0.105 4.105 25 C -0.063 4.063 26 O -0.305 6.305 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.154 0.846 31 H 0.199 0.801 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.167 0.833 37 H 0.131 0.869 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.199 1.842 -9.019 9.464 hybrid contribution -0.377 0.857 0.433 1.032 sum 1.822 2.698 -8.586 9.182 Atomic orbital electron populations 1.21609 0.95546 1.00785 1.00036 1.21414 0.95044 0.94733 0.91721 0.93114 1.73444 1.28240 1.32823 1.05440 1.20388 0.88698 0.89164 0.91716 1.22356 1.13366 0.97050 1.02057 1.21917 0.93859 0.98167 0.85415 1.42076 1.51433 1.10708 1.17423 0.74143 1.17699 0.86495 0.81682 0.93144 1.19718 1.42560 0.96228 0.94265 0.89038 1.26903 0.92987 0.94702 1.02063 1.69300 1.33407 1.09293 1.32789 0.84983 0.78587 0.79531 0.75542 1.17752 1.18780 1.18877 1.20094 1.24233 1.00335 0.98537 1.22769 0.93799 0.84151 0.97422 0.91848 1.22346 0.93544 0.98656 0.94101 1.60836 1.60806 1.04210 1.05662 1.22641 0.92913 0.91393 1.03511 1.23422 0.96069 0.97433 0.89344 1.88182 1.67825 1.26812 1.47682 0.95006 0.91428 0.93866 0.84611 0.80078 0.88172 0.90319 0.90313 0.92991 0.83262 0.86950 0.92616 0.91846 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.58 9.32 71.98 0.67 -3.91 16 2 C 0.08 3.33 2.75 44.99 0.12 3.46 16 3 H 0.05 1.94 5.21 -2.39 -0.01 1.93 16 4 N -0.67 -33.41 9.13 -314.59 -2.87 -36.28 16 5 C 0.26 13.34 6.80 42.30 0.29 13.63 16 6 C -0.32 -13.29 9.40 23.66 0.22 -13.07 16 7 C 0.14 5.08 11.15 83.10 0.93 6.01 16 8 N -0.60 -26.17 4.91 -188.19 -0.92 -27.09 16 9 H 0.42 16.97 6.25 -92.71 -0.58 16.39 16 10 C 0.32 16.20 6.39 38.88 0.25 16.45 16 11 C -0.50 -24.40 9.02 23.26 0.21 -24.19 16 12 H 0.09 4.56 7.92 -2.91 -0.02 4.54 16 13 C 0.05 2.21 5.17 85.39 0.44 2.65 16 14 N -0.82 -34.70 11.09 21.89 0.24 -34.45 16 15 Si 0.99 32.76 29.60 68.60 2.03 34.80 16 16 H -0.25 -7.90 7.11 99.48 0.71 -7.19 16 17 H -0.26 -8.21 7.11 99.48 0.71 -7.50 16 18 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 19 C -0.40 -22.04 9.83 23.41 0.23 -21.81 16 20 C 0.08 2.73 2.68 30.63 0.08 2.81 16 21 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 22 C 0.04 1.52 5.89 86.31 0.51 2.03 16 23 N -0.69 -19.28 6.93 -512.99 -3.55 -22.83 16 24 C 0.03 0.65 6.76 86.32 0.58 1.24 16 25 C 0.02 0.41 7.00 72.02 0.50 0.91 16 26 O -0.39 -14.29 9.54 -148.98 -1.42 -15.71 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 1.75 7.56 -2.38 -0.02 1.74 16 30 H 0.14 4.96 5.87 -2.91 -0.02 4.94 16 31 H 0.18 4.79 8.06 -2.91 -0.02 4.77 16 32 H 0.31 11.32 8.29 -92.71 -0.77 10.55 16 33 H 0.08 4.63 8.06 -2.91 -0.02 4.60 16 34 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.05 2.32 7.37 -2.39 -0.02 2.31 16 36 H 0.35 7.75 8.89 -89.69 -0.80 6.96 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -62.63 323.30 -1.77 -64.41 By element: Atomic # 1 Polarization: 51.27 SS G_CDS: -0.32 Total: 50.95 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 5.04 Total: -13.79 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -7.11 Total: -120.65 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -1.42 Total: -15.71 kcal Atomic # 14 Polarization: 32.76 SS G_CDS: 2.03 Total: 34.80 kcal Total: -62.63 -1.77 -64.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170570792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.767 kcal (2) G-P(sol) polarization free energy of solvation -62.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds