Wall clock time and date at job start Mon Mar 30 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.46748 * 180.02562 * 9 8 7 11 11 C 1.36939 * 119.99838 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99927 * 0.02562 * 11 10 9 13 13 C 1.38815 * 119.99976 * 179.97438 * 11 10 9 14 14 N 1.31612 * 120.00037 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99973 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46997 * 60.00396 * 15 13 11 17 17 H 1.48501 * 109.46950 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47074 * 300.00402 * 15 13 11 19 19 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 20 20 C 1.38676 * 120.41919 * 119.72211 * 19 2 1 21 21 C 1.38628 * 118.42230 * 179.78174 * 20 19 2 22 22 C 1.38233 * 119.15762 * 0.51363 * 21 20 19 23 23 N 1.31848 * 120.76411 * 359.72318 * 22 21 20 24 24 C 1.31883 * 121.73019 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 27 27 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 29 29 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 30 30 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 31 31 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 32 32 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 33 33 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 34 34 H 1.09007 * 109.47288 * 60.00489 * 9 8 7 35 35 H 0.96992 * 119.99973 * 359.97438 * 10 9 8 36 36 H 0.97003 * 120.00466 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.78983 * 0.02562 * 20 19 2 38 38 H 1.08004 * 120.42167 * 180.22079 * 21 20 19 39 39 H 1.08002 * 119.61381 * 179.74752 * 22 21 20 40 40 H 1.07999 * 119.61922 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6757 -0.2266 4.8999 9 6 2.1801 -0.9520 6.1490 10 7 1.6869 -0.2649 7.3452 11 6 2.0126 -0.7366 8.5889 12 1 2.6333 -1.6148 8.6878 13 6 1.5457 -0.0852 9.7224 14 7 0.7897 0.9853 9.6018 15 14 1.9894 -0.7290 11.4189 16 1 3.4655 -0.7189 11.5817 17 1 1.3708 0.1371 12.4544 18 1 1.4843 -2.1174 11.5692 19 6 2.0322 -0.7103 -1.2305 20 6 2.8252 -0.0430 -2.1519 21 6 3.2682 -0.7377 -3.2669 22 6 2.8983 -2.0599 -3.4274 23 7 2.1388 -2.6611 -2.5330 24 6 1.7033 -2.0330 -1.4581 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8898 28 1 1.1490 0.5383 2.5436 29 1 1.8264 -1.9720 3.6462 30 1 3.2802 -0.9450 3.6548 31 1 2.0395 0.8009 4.9042 32 1 0.5857 -0.2261 4.8957 33 1 1.8159 -1.9793 6.1445 34 1 3.2701 -0.9529 6.1534 35 1 1.1303 0.5244 7.2563 36 1 0.4637 1.4407 10.3938 37 1 3.0947 0.9921 -2.0025 38 1 3.8904 -0.2506 -4.0032 39 1 3.2359 -2.6069 -4.2953 40 1 1.0825 -2.5585 -0.7476 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171493489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:00 Heat of formation + Delta-G solvation = -3.852317 kcal Electronic energy + Delta-G solvation = -20227.975834 eV Core-core repulsion = 17042.483195 eV Total energy + Delta-G solvation = -3185.492640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85908 -39.47167 -36.13523 -34.88568 -34.38105 -32.42706 -31.96904 -30.22197 -29.26561 -25.77392 -24.88337 -23.80348 -23.06417 -22.05071 -21.22952 -20.01472 -17.56339 -17.39203 -16.95467 -16.43674 -16.17931 -15.65002 -15.11601 -14.60974 -14.56788 -14.18825 -13.99750 -13.73395 -13.33018 -13.28577 -13.07055 -12.96357 -12.72140 -12.40111 -11.86693 -11.75706 -11.59386 -10.98009 -10.92689 -10.80568 -10.63412 -10.17810 -10.10599 -9.82166 -9.69145 -9.66158 -9.20283 -9.10424 -8.89116 -6.95479 -5.78740 -3.07764 0.85643 1.04545 2.50151 3.04946 3.43812 3.47825 3.49099 3.63075 4.05753 4.35371 4.40403 4.57758 4.62741 4.64565 4.77624 4.80706 4.95153 5.09262 5.22866 5.27848 5.30181 5.43885 5.54299 5.55842 5.59759 5.69135 5.82663 5.95710 5.98644 6.03427 6.16307 6.29529 6.40178 6.44932 6.76470 6.80693 7.39554 7.68313 7.76823 8.10379 8.40259 9.51319 10.08144 10.42879 11.44189 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051642 B = 0.002378 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.066130 B =11772.080013 C =11997.317055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 H 0.107 0.893 4 C 0.514 3.486 5 O -0.533 6.533 6 N -0.724 5.724 7 C 0.122 3.878 8 C -0.137 4.137 9 C 0.156 3.844 10 N -0.734 5.734 11 C -0.241 4.241 12 H 0.071 0.929 13 C -0.015 4.015 14 N -0.935 5.935 15 Si 0.909 3.091 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.285 1.285 19 C -0.118 4.118 20 C -0.069 4.069 21 C -0.177 4.177 22 C 0.095 3.905 23 N -0.486 5.486 24 C 0.134 3.866 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.401 0.599 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.383 0.617 36 H 0.256 0.744 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 1.163 -26.750 26.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 H 0.125 0.875 4 C 0.299 3.701 5 O -0.410 6.410 6 N -0.376 5.376 7 C -0.002 4.002 8 C -0.175 4.175 9 C 0.028 3.972 10 N -0.378 5.378 11 C -0.372 4.372 12 H 0.089 0.911 13 C -0.211 4.211 14 N -0.584 5.584 15 Si 0.740 3.260 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.212 1.212 19 C -0.120 4.120 20 C -0.095 4.095 21 C -0.196 4.196 22 C -0.062 4.062 23 N -0.194 5.194 24 C -0.023 4.023 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.235 0.765 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.751 -0.544 -26.802 26.818 hybrid contribution 0.113 1.321 1.195 1.785 sum 0.864 0.777 -25.606 25.632 Atomic orbital electron populations 1.21826 0.91555 1.03420 1.03261 1.20236 0.97989 1.00277 0.90491 0.87490 1.20392 0.80487 0.84783 0.84455 1.90747 1.37453 1.26107 1.86661 1.46056 1.53716 1.32091 1.05733 1.21379 0.99500 0.96413 0.82865 1.21944 1.01497 1.00275 0.93833 1.20521 0.96463 0.94767 0.85451 1.42329 1.61574 1.33425 1.00480 1.19203 1.25782 1.08716 0.83502 0.91145 1.24756 1.00444 0.97924 0.97933 1.69644 1.39259 1.20910 1.28544 0.86236 0.77872 0.77902 0.83993 1.21217 1.21660 1.21207 1.20328 0.99673 0.96006 0.96022 1.21464 0.94647 1.00153 0.93252 1.22090 1.02102 0.96340 0.99101 1.22788 0.93680 0.92312 0.97396 1.67722 1.10508 1.38456 1.02749 1.22527 0.95635 0.90860 0.93270 0.91585 0.91131 0.91123 0.76479 0.91280 0.91363 0.91305 0.91262 0.96040 0.96080 0.78306 0.93443 0.84878 0.84797 0.82891 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.91 37.16 0.33 -0.56 16 2 C -0.07 -0.55 2.92 -92.92 -0.27 -0.82 16 3 H 0.11 0.63 7.93 -51.93 -0.41 0.22 16 4 C 0.51 5.96 7.03 -10.99 -0.08 5.88 16 5 O -0.53 -8.47 15.13 5.55 0.08 -8.38 16 6 N -0.72 -7.68 5.45 -60.29 -0.33 -8.01 16 7 C 0.12 1.60 5.67 -4.04 -0.02 1.58 16 8 C -0.14 -2.03 5.44 -26.73 -0.15 -2.18 16 9 C 0.16 3.09 6.26 -4.04 -0.03 3.06 16 10 N -0.73 -18.59 5.60 -59.90 -0.34 -18.92 16 11 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 12 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 13 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 14 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 15 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 C -0.12 -1.15 4.40 -104.48 -0.46 -1.61 16 20 C -0.07 -0.57 9.81 -39.28 -0.39 -0.95 16 21 C -0.18 -1.38 10.11 -39.44 -0.40 -1.77 16 22 C 0.09 0.88 11.18 -17.55 -0.20 0.69 16 23 N -0.49 -5.86 10.36 -13.25 -0.14 -6.00 16 24 C 0.13 1.55 9.13 -17.55 -0.16 1.39 16 25 H 0.07 0.46 7.41 -51.93 -0.38 0.08 16 26 H 0.07 0.36 7.56 -51.93 -0.39 -0.03 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.40 3.19 7.89 -40.82 -0.32 2.86 16 29 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.38 10.06 7.67 -40.82 -0.31 9.75 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.13 0.75 8.00 -52.49 -0.42 0.33 16 38 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.15 1.71 7.53 -52.49 -0.40 1.31 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -34.79 340.07 -7.94 -42.73 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.99 Total: 6.28 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.06 Total: -2.77 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.08 Total: -60.42 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.79 -7.94 -42.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171493489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.879 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds