Wall clock time and date at job start Mon Mar 30 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.46748 * 180.02562 * 9 8 7 11 11 C 1.36939 * 119.99838 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99927 * 0.02562 * 11 10 9 13 13 C 1.38815 * 119.99976 * 179.97438 * 11 10 9 14 14 N 1.31612 * 120.00037 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99973 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46997 * 60.00396 * 15 13 11 17 17 H 1.48501 * 109.46950 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47074 * 300.00402 * 15 13 11 19 19 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 20 20 C 1.38676 * 120.41919 * 119.72211 * 19 2 1 21 21 C 1.38628 * 118.42230 * 179.78174 * 20 19 2 22 22 C 1.38233 * 119.15762 * 0.51363 * 21 20 19 23 23 N 1.31848 * 120.76411 * 359.72318 * 22 21 20 24 24 C 1.31883 * 121.73019 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 27 27 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 29 29 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 30 30 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 31 31 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 32 32 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 33 33 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 34 34 H 1.09007 * 109.47288 * 60.00489 * 9 8 7 35 35 H 0.96992 * 119.99973 * 359.97438 * 10 9 8 36 36 H 0.97003 * 120.00466 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.78983 * 0.02562 * 20 19 2 38 38 H 1.08004 * 120.42167 * 180.22079 * 21 20 19 39 39 H 1.08002 * 119.61381 * 179.74752 * 22 21 20 40 40 H 1.07999 * 119.61922 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6757 -0.2266 4.8999 9 6 2.1801 -0.9520 6.1490 10 7 1.6869 -0.2649 7.3452 11 6 2.0126 -0.7366 8.5889 12 1 2.6333 -1.6148 8.6878 13 6 1.5457 -0.0852 9.7224 14 7 0.7897 0.9853 9.6018 15 14 1.9894 -0.7290 11.4189 16 1 3.4655 -0.7189 11.5817 17 1 1.3708 0.1371 12.4544 18 1 1.4843 -2.1174 11.5692 19 6 2.0322 -0.7103 -1.2305 20 6 2.8252 -0.0430 -2.1519 21 6 3.2682 -0.7377 -3.2669 22 6 2.8983 -2.0599 -3.4274 23 7 2.1388 -2.6611 -2.5330 24 6 1.7033 -2.0330 -1.4581 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8898 28 1 1.1490 0.5383 2.5436 29 1 1.8264 -1.9720 3.6462 30 1 3.2802 -0.9450 3.6548 31 1 2.0395 0.8009 4.9042 32 1 0.5857 -0.2261 4.8957 33 1 1.8159 -1.9793 6.1445 34 1 3.2701 -0.9529 6.1534 35 1 1.1303 0.5244 7.2563 36 1 0.4637 1.4407 10.3938 37 1 3.0947 0.9921 -2.0025 38 1 3.8904 -0.2506 -4.0032 39 1 3.2359 -2.6069 -4.2953 40 1 1.0825 -2.5585 -0.7476 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171493489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:00 Heat of formation + Delta-G solvation = -28.699474 kcal Electronic energy + Delta-G solvation = -20229.053288 eV Core-core repulsion = 17042.483195 eV Total energy + Delta-G solvation = -3186.570093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.62203 -40.33572 -37.54474 -35.91682 -35.62977 -33.73987 -33.03694 -31.46964 -30.36513 -27.13370 -25.84803 -24.60545 -24.44242 -23.09049 -22.58009 -20.94928 -19.19551 -18.19389 -18.07412 -17.33914 -17.04189 -16.73348 -16.59667 -15.77440 -15.64549 -15.29715 -15.16821 -14.81747 -14.69073 -14.41035 -13.98445 -13.92941 -13.50622 -13.30427 -13.24312 -12.79520 -12.62963 -12.47021 -12.42559 -12.27632 -12.10087 -12.03701 -11.79860 -10.94422 -10.93862 -10.63211 -10.37413 -10.10676 -9.89375 -9.02685 -7.97161 -5.26347 0.17410 0.38532 1.47439 1.50394 1.56569 1.60904 2.15764 2.55966 2.91888 3.36432 3.41586 3.65798 3.75190 3.77846 4.00911 4.06504 4.08504 4.15284 4.23000 4.29014 4.41335 4.46245 4.65776 4.72582 4.73202 4.80241 4.87354 4.89892 4.93393 5.20493 5.21969 5.28298 5.31303 5.35410 5.42728 5.47929 5.80579 6.25590 6.54995 7.06059 7.23730 7.32114 8.06699 8.30880 9.26013 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051642 B = 0.002378 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.066130 B =11772.080013 C =11997.317055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 H 0.139 0.861 4 C 0.512 3.488 5 O -0.581 6.581 6 N -0.713 5.713 7 C 0.133 3.867 8 C -0.117 4.117 9 C 0.151 3.849 10 N -0.746 5.746 11 C -0.252 4.252 12 H 0.074 0.926 13 C -0.074 4.074 14 N -0.967 5.967 15 Si 0.975 3.025 16 H -0.278 1.278 17 H -0.293 1.293 18 H -0.278 1.278 19 C -0.127 4.127 20 C -0.073 4.073 21 C -0.171 4.171 22 C 0.078 3.922 23 N -0.522 5.522 24 C 0.108 3.892 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.417 0.583 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.376 0.624 36 H 0.253 0.747 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 2.478 -27.838 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 H 0.157 0.843 4 C 0.299 3.701 5 O -0.461 6.461 6 N -0.365 5.365 7 C 0.009 3.991 8 C -0.155 4.155 9 C 0.024 3.976 10 N -0.390 5.390 11 C -0.383 4.383 12 H 0.091 0.909 13 C -0.267 4.267 14 N -0.618 5.618 15 Si 0.803 3.197 16 H -0.204 1.204 17 H -0.219 1.219 18 H -0.204 1.204 19 C -0.129 4.129 20 C -0.098 4.098 21 C -0.190 4.190 22 C -0.078 4.078 23 N -0.232 5.232 24 C -0.048 4.048 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.254 0.746 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.208 0.792 36 H 0.062 0.938 37 H 0.183 0.817 38 H 0.185 0.815 39 H 0.192 0.808 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.181 0.774 -27.913 27.949 hybrid contribution 0.020 0.874 1.439 1.684 sum 1.201 1.649 -26.475 26.553 Atomic orbital electron populations 1.21845 0.90138 1.03029 1.04784 1.20272 0.98994 1.00917 0.87723 0.84322 1.21054 0.79480 0.84162 0.85388 1.90733 1.39706 1.28304 1.87323 1.45889 1.53552 1.32312 1.04794 1.21063 0.98869 0.95965 0.83228 1.21693 1.01710 1.00016 0.92114 1.20683 0.96303 0.94839 0.85749 1.42528 1.61593 1.33508 1.01331 1.19601 1.25187 1.08595 0.84946 0.90854 1.25586 1.00966 0.98488 1.01654 1.69789 1.40609 1.22188 1.29200 0.85198 0.77782 0.77370 0.79325 1.20394 1.21876 1.20435 1.20510 0.99991 0.95455 0.96993 1.21907 0.93584 1.01596 0.92738 1.22483 1.01388 0.95647 0.99478 1.23272 0.93406 0.93551 0.97590 1.67647 1.11963 1.39844 1.03701 1.22471 0.96775 0.92063 0.93519 0.93010 0.89590 0.89568 0.74586 0.92275 0.92259 0.90563 0.90581 0.96204 0.96182 0.79156 0.93845 0.81720 0.81485 0.80783 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.91 71.98 0.64 -0.83 16 2 C -0.06 -0.81 2.92 -12.29 -0.04 -0.84 16 3 H 0.14 1.09 7.93 -2.39 -0.02 1.07 16 4 C 0.51 11.38 7.03 87.66 0.62 11.99 16 5 O -0.58 -18.68 15.13 -3.04 -0.05 -18.72 16 6 N -0.71 -13.99 5.45 -463.05 -2.52 -16.51 16 7 C 0.13 3.40 5.67 86.38 0.49 3.89 16 8 C -0.12 -3.33 5.44 30.59 0.17 -3.16 16 9 C 0.15 5.92 6.26 86.38 0.54 6.46 16 10 N -0.75 -37.77 5.60 -343.44 -1.92 -39.70 16 11 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 12 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 13 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 14 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 15 Si 0.97 46.06 29.55 68.60 2.03 48.08 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 C -0.13 -2.32 4.40 -19.77 -0.09 -2.41 16 20 C -0.07 -1.00 9.81 22.47 0.22 -0.78 16 21 C -0.17 -2.25 10.11 22.36 0.23 -2.02 16 22 C 0.08 1.39 11.18 84.69 0.95 2.33 16 23 N -0.52 -12.92 10.36 -195.84 -2.03 -14.95 16 24 C 0.11 2.58 9.13 84.67 0.77 3.35 16 25 H 0.05 0.70 7.41 -2.39 -0.02 0.68 16 26 H 0.09 0.63 7.56 -2.39 -0.02 0.61 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.42 5.53 7.89 -92.71 -0.73 4.80 16 29 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 32 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.38 19.80 7.67 -92.71 -0.71 19.09 16 36 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.17 1.15 8.00 -2.91 -0.02 1.12 16 38 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 39 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 40 H 0.14 3.38 7.53 -2.91 -0.02 3.36 16 Total: -1.00 -76.24 340.07 1.19 -75.05 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.40 Total: 24.29 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 5.80 Total: 0.83 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -6.19 Total: -129.52 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.05 Total: -18.72 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -76.24 1.19 -75.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171493489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.346 kcal (2) G-P(sol) polarization free energy of solvation -76.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds