Wall clock time and date at job start Mon Mar 30 2020 02:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47624 * 2 1 4 4 C 1.50703 * 109.47084 * 239.99590 * 2 1 3 5 5 O 1.21279 * 119.99926 * 239.99962 * 4 2 1 6 6 N 1.34775 * 119.99773 * 60.00361 * 4 2 1 7 7 C 1.46504 * 119.99531 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46883 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.46953 * 179.97438 * 9 8 7 11 11 C 1.36942 * 120.00106 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99638 * 0.02562 * 11 10 9 13 13 C 1.38805 * 120.00269 * 179.97438 * 11 10 9 14 14 N 1.31618 * 120.00220 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00127 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47382 * 89.99276 * 15 13 11 17 17 H 1.48499 * 109.47097 * 209.99526 * 15 13 11 18 18 H 1.48502 * 109.46778 * 329.99345 * 15 13 11 19 19 C 1.50706 * 109.47237 * 120.00037 * 2 1 3 20 20 C 1.38670 * 120.41482 * 240.00059 * 19 2 1 21 21 C 1.38633 * 118.41984 * 179.97438 * 20 19 2 22 22 C 1.38227 * 119.15886 * 359.97438 * 21 20 19 23 23 N 1.31853 * 120.76226 * 0.02562 * 22 21 20 24 24 C 1.31884 * 121.72999 * 359.70766 * 23 22 21 25 25 H 1.09002 * 109.47045 * 60.00376 * 1 2 3 26 26 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47140 * 300.00469 * 1 2 3 28 28 H 0.96992 * 120.00503 * 359.97438 * 6 4 2 29 29 H 1.09001 * 109.46891 * 60.00097 * 7 6 4 30 30 H 1.08993 * 109.47378 * 299.99469 * 7 6 4 31 31 H 1.09001 * 109.46801 * 300.00349 * 8 7 6 32 32 H 1.09001 * 109.46998 * 59.99945 * 8 7 6 33 33 H 1.08996 * 109.46952 * 300.00302 * 9 8 7 34 34 H 1.09001 * 109.46832 * 60.00321 * 9 8 7 35 35 H 0.96999 * 120.00356 * 0.02562 * 10 9 8 36 36 H 0.97001 * 120.00655 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.79114 * 359.97438 * 20 19 2 38 38 H 1.07998 * 120.42177 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.61647 * 179.97438 * 22 21 20 40 40 H 1.07992 * 119.61971 * 180.31158 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1956 -0.9405 -3.6506 8 6 1.6850 -0.2197 -4.9000 9 6 2.1949 -0.9410 -6.1492 10 7 1.7055 -0.2512 -7.3453 11 6 2.0365 -0.7190 -8.5891 12 1 2.6581 -1.5967 -8.6881 13 6 1.5724 -0.0657 -9.7225 14 7 1.8902 -0.5156 -10.9179 15 14 0.4969 1.4519 -9.5512 16 1 1.3540 2.6637 -9.5067 17 1 -0.4242 1.5395 -10.7127 18 1 -0.2943 1.3590 -8.2979 19 6 2.0324 -0.7104 1.2305 20 6 2.8301 -0.0448 2.1489 21 6 3.2688 -0.7380 3.2665 22 6 2.8985 -2.0600 3.4272 23 7 2.1385 -2.6611 2.5330 24 6 1.6987 -2.0314 1.4609 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.1489 0.5383 -2.5436 29 1 1.8326 -1.9683 -3.6507 30 1 3.2855 -0.9400 -3.6505 31 1 0.5950 -0.2204 -4.8999 32 1 2.0476 0.8082 -4.9001 33 1 3.2849 -0.9407 -6.1494 34 1 1.8319 -1.9688 -6.1488 35 1 1.1477 0.5373 -7.2564 36 1 1.5662 -0.0589 -11.7100 37 1 3.1032 0.9890 1.9972 38 1 3.8912 -0.2511 4.0026 39 1 3.2364 -2.6072 4.2949 40 1 1.0739 -2.5554 0.7529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171493490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:03 Heat of formation + Delta-G solvation = 0.593441 kcal Electronic energy + Delta-G solvation = -20290.527454 eV Core-core repulsion = 17105.227598 eV Total energy + Delta-G solvation = -3185.299857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90485 -39.52806 -36.28918 -34.93794 -34.52895 -32.46206 -32.01957 -30.44992 -29.58874 -25.95216 -24.97629 -23.83798 -22.91651 -21.93535 -21.33107 -20.12267 -17.75723 -17.44883 -17.27637 -16.51514 -16.22899 -15.73881 -15.15705 -14.69650 -14.56306 -14.23068 -14.06323 -13.88375 -13.49816 -13.36408 -13.06798 -12.83896 -12.78725 -12.49192 -12.07585 -11.89658 -11.72557 -11.22933 -11.07064 -10.86815 -10.74356 -10.21448 -10.17094 -9.84372 -9.69422 -9.61811 -9.24057 -9.18074 -8.93074 -7.27300 -5.79120 -3.15546 0.82079 1.01178 2.44175 2.97797 3.33811 3.36025 3.42291 3.59249 4.01287 4.30574 4.36196 4.56014 4.58584 4.59665 4.72731 4.75957 4.89746 4.91787 5.15647 5.17650 5.24980 5.38267 5.45910 5.50746 5.51219 5.63305 5.76203 5.79323 5.88580 5.91764 5.94876 6.09882 6.31070 6.41458 6.65181 6.68210 7.31775 7.73614 7.96817 8.03890 8.39546 9.18140 9.90122 10.09447 11.39202 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045539 B = 0.002551 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.713620 B =10972.492456 C =11268.803867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 H 0.107 0.893 4 C 0.514 3.486 5 O -0.531 6.531 6 N -0.726 5.726 7 C 0.122 3.878 8 C -0.141 4.141 9 C 0.160 3.840 10 N -0.757 5.757 11 C -0.246 4.246 12 H 0.091 0.909 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.887 3.113 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.278 1.278 19 C -0.119 4.119 20 C -0.069 4.069 21 C -0.176 4.176 22 C 0.095 3.905 23 N -0.486 5.486 24 C 0.134 3.866 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.400 0.600 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.360 0.640 36 H 0.260 0.740 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 4.568 30.087 30.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 H 0.125 0.875 4 C 0.299 3.701 5 O -0.407 6.407 6 N -0.377 5.377 7 C -0.002 4.002 8 C -0.180 4.180 9 C 0.032 3.968 10 N -0.403 5.403 11 C -0.376 4.376 12 H 0.109 0.891 13 C -0.193 4.193 14 N -0.581 5.581 15 Si 0.717 3.283 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.121 4.121 20 C -0.095 4.095 21 C -0.196 4.196 22 C -0.061 4.061 23 N -0.194 5.194 24 C -0.023 4.023 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.234 0.766 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.193 0.807 36 H 0.070 0.930 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.719 2.803 30.092 30.271 hybrid contribution -0.694 2.454 -0.303 2.568 sum -2.413 5.257 29.789 30.346 Atomic orbital electron populations 1.21826 0.91577 1.03438 1.03218 1.20236 0.97968 1.00261 0.90500 0.87506 1.20397 0.80482 0.84799 0.84426 1.90754 1.37334 1.26018 1.86629 1.46046 1.53702 1.32232 1.05763 1.21360 0.99603 0.96518 0.82677 1.21995 1.01464 1.00306 0.94203 1.20496 0.96984 0.94899 0.84377 1.42685 1.62050 1.33291 1.02238 1.19072 1.26550 1.10373 0.81585 0.89144 1.24698 1.00484 0.99022 0.95079 1.69703 1.49717 1.41941 0.96773 0.86509 0.80776 0.84113 0.76863 1.21082 1.21684 1.20396 1.20318 0.99706 0.96045 0.96044 1.21461 0.94650 1.00142 0.93250 1.22092 1.02104 0.96363 0.99054 1.22795 0.93651 0.92298 0.97374 1.67726 1.10470 1.38407 1.02787 1.22523 0.95655 0.90819 0.93303 0.91217 0.91552 0.91100 0.76564 0.91087 0.91163 0.91318 0.91353 0.95180 0.95200 0.80699 0.93013 0.84890 0.84776 0.82857 0.83174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.90 37.16 0.33 -0.49 16 2 C -0.07 -0.51 2.92 -92.92 -0.27 -0.78 16 3 H 0.11 0.58 7.93 -51.93 -0.41 0.16 16 4 C 0.51 5.67 7.03 -10.98 -0.08 5.59 16 5 O -0.53 -8.18 15.15 5.56 0.08 -8.10 16 6 N -0.73 -7.15 5.45 -60.29 -0.33 -7.47 16 7 C 0.12 1.50 5.67 -4.04 -0.02 1.47 16 8 C -0.14 -1.91 5.44 -26.73 -0.15 -2.06 16 9 C 0.16 2.99 6.26 -4.05 -0.03 2.96 16 10 N -0.76 -17.83 5.41 -59.91 -0.32 -18.15 16 11 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 12 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 13 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 14 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 15 Si 0.89 21.84 27.74 -169.99 -4.71 17.13 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 19 C -0.12 -1.11 4.40 -104.48 -0.46 -1.57 16 20 C -0.07 -0.55 9.81 -39.28 -0.39 -0.93 16 21 C -0.18 -1.33 10.11 -39.44 -0.40 -1.73 16 22 C 0.10 0.86 11.18 -17.55 -0.20 0.67 16 23 N -0.49 -5.72 10.36 -13.26 -0.14 -5.86 16 24 C 0.13 1.50 9.13 -17.55 -0.16 1.34 16 25 H 0.07 0.31 7.56 -51.93 -0.39 -0.08 16 26 H 0.07 0.43 7.40 -51.93 -0.38 0.05 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.40 2.83 7.89 -40.82 -0.32 2.51 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.36 8.14 5.53 -40.82 -0.23 7.91 16 36 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 37 H 0.13 0.70 8.00 -52.49 -0.42 0.28 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.15 1.65 7.53 -52.49 -0.40 1.25 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -35.72 336.96 -7.58 -43.30 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.95 Total: 5.39 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -2.06 Total: -2.69 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.01 Total: -60.11 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.72 -7.58 -43.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171493490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.895 kcal (2) G-P(sol) polarization free energy of solvation -35.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds