Wall clock time and date at job start Mon Mar 30 2020 02:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47624 * 2 1 4 4 C 1.50703 * 109.47084 * 239.99590 * 2 1 3 5 5 O 1.21279 * 119.99926 * 239.99962 * 4 2 1 6 6 N 1.34775 * 119.99773 * 60.00361 * 4 2 1 7 7 C 1.46504 * 119.99531 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46883 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.46953 * 179.97438 * 9 8 7 11 11 C 1.36942 * 120.00106 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99638 * 0.02562 * 11 10 9 13 13 C 1.38805 * 120.00269 * 179.97438 * 11 10 9 14 14 N 1.31618 * 120.00220 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00127 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47382 * 89.99276 * 15 13 11 17 17 H 1.48499 * 109.47097 * 209.99526 * 15 13 11 18 18 H 1.48502 * 109.46778 * 329.99345 * 15 13 11 19 19 C 1.50706 * 109.47237 * 120.00037 * 2 1 3 20 20 C 1.38670 * 120.41482 * 240.00059 * 19 2 1 21 21 C 1.38633 * 118.41984 * 179.97438 * 20 19 2 22 22 C 1.38227 * 119.15886 * 359.97438 * 21 20 19 23 23 N 1.31853 * 120.76226 * 0.02562 * 22 21 20 24 24 C 1.31884 * 121.72999 * 359.70766 * 23 22 21 25 25 H 1.09002 * 109.47045 * 60.00376 * 1 2 3 26 26 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47140 * 300.00469 * 1 2 3 28 28 H 0.96992 * 120.00503 * 359.97438 * 6 4 2 29 29 H 1.09001 * 109.46891 * 60.00097 * 7 6 4 30 30 H 1.08993 * 109.47378 * 299.99469 * 7 6 4 31 31 H 1.09001 * 109.46801 * 300.00349 * 8 7 6 32 32 H 1.09001 * 109.46998 * 59.99945 * 8 7 6 33 33 H 1.08996 * 109.46952 * 300.00302 * 9 8 7 34 34 H 1.09001 * 109.46832 * 60.00321 * 9 8 7 35 35 H 0.96999 * 120.00356 * 0.02562 * 10 9 8 36 36 H 0.97001 * 120.00655 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.79114 * 359.97438 * 20 19 2 38 38 H 1.07998 * 120.42177 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.61647 * 179.97438 * 22 21 20 40 40 H 1.07992 * 119.61971 * 180.31158 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1956 -0.9405 -3.6506 8 6 1.6850 -0.2197 -4.9000 9 6 2.1949 -0.9410 -6.1492 10 7 1.7055 -0.2512 -7.3453 11 6 2.0365 -0.7190 -8.5891 12 1 2.6581 -1.5967 -8.6881 13 6 1.5724 -0.0657 -9.7225 14 7 1.8902 -0.5156 -10.9179 15 14 0.4969 1.4519 -9.5512 16 1 1.3540 2.6637 -9.5067 17 1 -0.4242 1.5395 -10.7127 18 1 -0.2943 1.3590 -8.2979 19 6 2.0324 -0.7104 1.2305 20 6 2.8301 -0.0448 2.1489 21 6 3.2688 -0.7380 3.2665 22 6 2.8985 -2.0600 3.4272 23 7 2.1385 -2.6611 2.5330 24 6 1.6987 -2.0314 1.4609 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.1489 0.5383 -2.5436 29 1 1.8326 -1.9683 -3.6507 30 1 3.2855 -0.9400 -3.6505 31 1 0.5950 -0.2204 -4.8999 32 1 2.0476 0.8082 -4.9001 33 1 3.2849 -0.9407 -6.1494 34 1 1.8319 -1.9688 -6.1488 35 1 1.1477 0.5373 -7.2564 36 1 1.5662 -0.0589 -11.7100 37 1 3.1032 0.9890 1.9972 38 1 3.8912 -0.2511 4.0026 39 1 3.2364 -2.6072 4.2949 40 1 1.0739 -2.5554 0.7529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171493490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:03 Heat of formation + Delta-G solvation = -25.897547 kcal Electronic energy + Delta-G solvation = -20291.676190 eV Core-core repulsion = 17105.227598 eV Total energy + Delta-G solvation = -3186.448592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.62513 -40.34109 -37.66523 -35.97534 -35.63434 -33.86940 -33.05521 -31.82531 -30.45910 -27.25240 -25.81672 -24.50876 -24.26659 -23.05932 -22.68192 -21.00804 -19.64703 -18.22510 -18.07746 -17.34505 -17.04674 -16.74705 -16.55475 -15.93105 -15.67075 -15.41834 -14.99145 -14.81246 -14.69367 -14.47197 -14.02908 -13.93922 -13.78770 -13.50858 -13.24763 -12.87951 -12.56274 -12.53978 -12.45103 -12.26057 -12.08494 -12.00248 -11.80971 -10.98432 -10.94425 -10.63616 -10.37674 -10.10892 -9.89852 -9.32700 -8.03632 -5.39076 0.16950 0.38208 1.38295 1.44165 1.51590 1.61102 2.15124 2.49112 2.91291 3.27328 3.41302 3.55423 3.65739 3.75763 3.99828 4.06051 4.07868 4.14466 4.22417 4.24476 4.29389 4.41596 4.65324 4.70817 4.71461 4.80055 4.87653 4.89824 4.93508 5.20082 5.21675 5.25269 5.28399 5.35010 5.42343 5.73885 5.80218 6.19763 6.55212 7.05792 7.06721 7.24569 7.80906 8.02331 9.17860 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045539 B = 0.002551 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.713620 B =10972.492456 C =11268.803867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 H 0.140 0.860 4 C 0.512 3.488 5 O -0.582 6.582 6 N -0.712 5.712 7 C 0.131 3.869 8 C -0.121 4.121 9 C 0.153 3.847 10 N -0.758 5.758 11 C -0.243 4.243 12 H 0.051 0.949 13 C -0.069 4.069 14 N -0.986 5.986 15 Si 0.965 3.035 16 H -0.275 1.275 17 H -0.297 1.297 18 H -0.244 1.244 19 C -0.127 4.127 20 C -0.073 4.073 21 C -0.171 4.171 22 C 0.078 3.922 23 N -0.523 5.523 24 C 0.108 3.892 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.418 0.582 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.370 0.630 36 H 0.259 0.741 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.174 0.826 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 7.898 32.470 33.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 H 0.158 0.842 4 C 0.299 3.701 5 O -0.461 6.461 6 N -0.365 5.365 7 C 0.006 3.994 8 C -0.159 4.159 9 C 0.026 3.974 10 N -0.404 5.404 11 C -0.374 4.374 12 H 0.069 0.931 13 C -0.261 4.261 14 N -0.636 5.636 15 Si 0.791 3.209 16 H -0.201 1.201 17 H -0.223 1.223 18 H -0.168 1.168 19 C -0.130 4.130 20 C -0.098 4.098 21 C -0.190 4.190 22 C -0.079 4.079 23 N -0.232 5.232 24 C -0.049 4.049 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.255 0.745 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.203 0.797 36 H 0.068 0.932 37 H 0.183 0.817 38 H 0.185 0.815 39 H 0.191 0.809 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.762 6.157 32.530 33.223 hybrid contribution -0.272 1.301 -0.999 1.662 sum -3.034 7.458 31.531 32.543 Atomic orbital electron populations 1.21847 0.90086 1.03020 1.04835 1.20279 0.99025 1.00918 0.87659 0.84233 1.21058 0.79473 0.84156 0.85446 1.90741 1.39702 1.28330 1.87328 1.45853 1.53472 1.32462 1.04703 1.21065 0.98896 0.96088 0.83331 1.21757 1.02157 1.00324 0.91683 1.20660 0.96656 0.94959 0.85095 1.42641 1.62203 1.33777 1.01783 1.19040 1.25337 1.09016 0.83990 0.93081 1.25666 1.02716 1.03224 0.94457 1.69909 1.51720 1.44101 0.97853 0.85271 0.78658 0.79075 0.77919 1.20134 1.22339 1.16814 1.20522 0.99932 0.95462 0.97066 1.21910 0.93597 1.01595 0.92722 1.22482 1.01406 0.95658 0.99480 1.23265 0.93458 0.93562 0.97574 1.67646 1.11941 1.39832 1.03780 1.22477 0.96789 0.92070 0.93531 0.89393 0.93069 0.89634 0.74470 0.92376 0.92322 0.89826 0.89686 0.95853 0.95979 0.79676 0.93243 0.81674 0.81522 0.80853 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.90 71.98 0.64 -0.60 16 2 C -0.06 -0.72 2.92 -12.28 -0.04 -0.75 16 3 H 0.14 0.86 7.93 -2.39 -0.02 0.84 16 4 C 0.51 10.54 7.03 87.66 0.62 11.16 16 5 O -0.58 -18.06 15.15 -3.03 -0.05 -18.10 16 6 N -0.71 -12.28 5.45 -463.05 -2.52 -14.80 16 7 C 0.13 3.03 5.67 86.38 0.49 3.52 16 8 C -0.12 -2.95 5.44 30.60 0.17 -2.79 16 9 C 0.15 5.59 6.26 86.38 0.54 6.13 16 10 N -0.76 -34.70 5.41 -343.47 -1.86 -36.56 16 11 C -0.24 -14.02 10.47 84.03 0.88 -13.14 16 12 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 13 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 14 N -0.99 -63.60 13.97 21.65 0.30 -63.30 16 15 Si 0.96 44.27 27.74 68.60 1.90 46.17 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 18 H -0.24 -9.74 6.52 99.48 0.65 -9.09 16 19 C -0.13 -2.20 4.40 -19.77 -0.09 -2.29 16 20 C -0.07 -0.94 9.81 22.47 0.22 -0.72 16 21 C -0.17 -2.15 10.11 22.36 0.23 -1.93 16 22 C 0.08 1.34 11.18 84.69 0.95 2.29 16 23 N -0.52 -12.66 10.36 -195.85 -2.03 -14.69 16 24 C 0.11 2.48 9.13 84.67 0.77 3.26 16 25 H 0.09 0.45 7.56 -2.39 -0.02 0.43 16 26 H 0.05 0.62 7.40 -2.39 -0.02 0.60 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.42 4.26 7.89 -92.71 -0.73 3.52 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.37 15.50 5.53 -92.71 -0.51 14.98 16 36 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 37 H 0.17 0.99 8.00 -2.91 -0.02 0.97 16 38 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.14 3.27 7.53 -2.91 -0.02 3.24 16 Total: -1.00 -81.23 336.96 1.34 -79.89 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -0.26 Total: 20.87 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 5.85 Total: 0.51 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -6.11 Total: -129.34 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.05 Total: -18.10 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.90 Total: 46.17 kcal Total: -81.23 1.34 -79.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171493490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.994 kcal (2) G-P(sol) polarization free energy of solvation -81.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds